View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_low_27 (Length: 320)
Name: NF9239_low_27
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_low_27 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 48405177 - 48404994
Alignment:
| Q |
9 |
attattctgaaccgttggaagtccgacaggattattacatgttcatgtaggtatcactgcttctgcttagctttttagttagaggccagggtgggaaact |
108 |
Q |
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| T |
48405177 |
attattatgaaccgttggaagtccgacaggattattacatgttcatgtaggtatcactgcttctgcttagctttttagttagaggccagggtgggaaact |
48405078 |
T |
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| Q |
109 |
accctcatgcaaattgaggaactgagtttatttttggtcctttatataagagacattttgtgtattattgatcaatttccttca |
192 |
Q |
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| T |
48405077 |
accctcatgcaaattgaggaactgagtttatttttggtcctttatataagagacattttgtgtattattgatcaatttccttca |
48404994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 188 - 320
Target Start/End: Complemental strand, 48404849 - 48404717
Alignment:
| Q |
188 |
cttcaatccccctatattagaaataaaatttatattcacacataagttgaggaactgagtttatttttgtgcttagcttttgagttagaggccagggaaa |
287 |
Q |
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| T |
48404849 |
cttcaatccccctatattagaaataaaatttatattcacacataagttgaggaactgagtttatttttgtgcttagcttttgagttagaggccagggaaa |
48404750 |
T |
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| Q |
288 |
ctacactcatgcaaattgaatccaatctgatat |
320 |
Q |
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| T |
48404749 |
ctacactcatgcaaattgaatccaatctgatat |
48404717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 48406111 - 48406015
Alignment:
| Q |
129 |
actgagtttatttttggtcctttatataagagacattttgtgtattattgatcaatttccttcaatccccctatattagaaataaaatttatattcaca |
227 |
Q |
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| T |
48406111 |
actgagtttattcttggtcctttatttaagagacattttgtgtattatcgatcaatttccttcaatccccctatattagtaataaa--ttatattcaca |
48406015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 48404780 - 48404731
Alignment:
| Q |
72 |
tgcttagctttttagttagaggccagggtgggaaactaccctcatgcaaattga |
125 |
Q |
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| T |
48404780 |
tgcttagcttttgagttagaggcca----gggaaactacactcatgcaaattga |
48404731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 48405114 - 48405061
Alignment:
| Q |
257 |
tgcttagcttttgagttagaggcca----gggaaactacactcatgcaaattga |
306 |
Q |
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| T |
48405114 |
tgcttagctttttagttagaggccagggtgggaaactaccctcatgcaaattga |
48405061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 42830470 - 42830538
Alignment:
| Q |
252 |
ttttgtgcttagcttttgagttagaggccagggaaactacactcatgcaaattgaatccaatctgatat |
320 |
Q |
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| T |
42830470 |
ttttgtgcttagctttttagttagaggccagggaaactacactcatgcaaattgaatccaaactgatat |
42830538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 42830370 - 42830418
Alignment:
| Q |
23 |
ttggaagtccgacaggattattacatgttcatgtaggtatcactgcttc |
71 |
Q |
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| T |
42830370 |
ttggaagtccgacaggattattacatgttcatgtaggtatcactgcttc |
42830418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 42829246 - 42829291
Alignment:
| Q |
175 |
attgatcaatttccttcaatccccctatattagaaataaaatttat |
220 |
Q |
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| T |
42829246 |
attgataaatttccttcaatccccctatattagtaataaattttat |
42829291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 42830475 - 42830524
Alignment:
| Q |
72 |
tgcttagctttttagttagaggccagggtgggaaactaccctcatgcaaattga |
125 |
Q |
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| T |
42830475 |
tgcttagctttttagttagaggcca----gggaaactacactcatgcaaattga |
42830524 |
T |
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