View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9239_low_29 (Length: 249)
Name: NF9239_low_29
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9239_low_29 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 40484404 - 40484165
Alignment:
| Q |
11 |
cacagaagatcctttaagagtggtatggataatcagataatgtgatagt-taagacttcttgtaggacaaatttacataccagcctcctctgctaacagt |
109 |
Q |
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| T |
40484404 |
cacagaagatcctttaagagtggtatggataatcatataatgtgatagtgtaagacttcttgtaggacaaatttacataccagcctcctctgctaacagt |
40484305 |
T |
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| Q |
110 |
atccttttcaaatgaaagcttccaatcttgtcgataaccttccatatacaattctattattttaagacctgcctgtagtgcaacagctaaaattaacacg |
209 |
Q |
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| T |
40484304 |
atccttttcaaatgaaagcttccaatcttgtcgataaccttccatatacaattctattattttaagacctgcctgtagtgcaacagctaaaattaacacg |
40484205 |
T |
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| Q |
210 |
ggatcctttgtatatttaacaacaacttcaacttataaac |
249 |
Q |
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| T |
40484204 |
ggatcctttgtatatttaacaaaaacttcaacttataaac |
40484165 |
T |
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