View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9239_low_33 (Length: 236)

Name: NF9239_low_33
Description: NF9239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9239_low_33
NF9239_low_33
[»] chr4 (2 HSPs)
chr4 (82-217)||(55336259-55336394)
chr4 (82-217)||(55330821-55330956)
[»] chr2 (9 HSPs)
chr2 (85-217)||(8431153-8431285)
chr2 (86-216)||(8375861-8375991)
chr2 (86-216)||(8439112-8439242)
chr2 (82-216)||(8395540-8395674)
chr2 (82-216)||(8405898-8406032)
chr2 (82-217)||(8412014-8412149)
chr2 (82-217)||(8434112-8434247)
chr2 (83-217)||(8417232-8417366)
chr2 (107-196)||(8403959-8404048)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 55336394 - 55336259
Alignment:
Q  82 tggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336394 tggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattg 55336295  T
Q  182 aagattaacaagagtatggcaatagcaggtccatta 217  Q
    ||||||||||||||||||||||||||||||||||||    
T  55336294 aagattaacaagagtatggcaatagcaggtccatta 55336259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 55330956 - 55330821
Alignment:
Q  82 tggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattg 181  Q
    |||||||||||| |||||||||| |||| |||| ||||||||||||||||| || |  ||||| |||||||| ||||| ||||||||||||||||||||     
T  55330956 tggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaaagacttggaaatatagcatta 55330857  T
Q  182 aagattaacaagagtatggcaatagcaggtccatta 217  Q
    ||| |||| |||||| | ||||  || |||||||||    
T  55330856 aaggttaataagagtttagcaactgctggtccatta 55330821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 8431285 - 8431153
Alignment:
Q  85 atggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaag 184  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||  ||||||| |||||| ||||||| ||||| ||||||||||| ||||||||||||    
T  8431285 atggagtgaagaattagaaatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaag 8431186  T
Q  185 attaacaagagtatggcaatagcaggtccatta 217  Q
     | ||||||||| ||||||| ||||| ||||||    
T  8431185 gtaaacaagagtttggcaattgcagggccatta 8431153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 8375861 - 8375991
Alignment:
Q  86 tggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaaga 185  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||  ||||||| ||||||  |||||| ||||| ||||||||||| ||||||||||||     
T  8375861 tggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatagcattgaagg 8375960  T
Q  186 ttaacaagagtatggcaatagcaggtccatt 216  Q
    | ||||||||| ||||||| ||||| |||||    
T  8375961 taaacaagagtttggcaattgcagggccatt 8375991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 8439242 - 8439112
Alignment:
Q  86 tggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaaga 185  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||  ||||||| ||||||  |||||| ||||| ||||||||||| ||||||||||||     
T  8439242 tggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatagcattgaagg 8439143  T
Q  186 ttaacaagagtatggcaatagcaggtccatt 216  Q
    | ||||||||| ||||||| ||||| |||||    
T  8439142 taaacaagagtttggcaattgcagggccatt 8439112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 216
Target Start/End: Original strand, 8395540 - 8395674
Alignment:
Q  82 tggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattg 181  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| || |||||  | ||||||  |||||| ||||| ||||||||||| ||||| |||    
T  8395540 tggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatagctttg 8395639  T
Q  182 aagattaacaagagtatggcaatagcaggtccatt 216  Q
    ||| | ||||||||| ||||||| ||||| |||||    
T  8395640 aaggtaaacaagagtttggcaattgcagggccatt 8395674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 216
Target Start/End: Complemental strand, 8406032 - 8405898
Alignment:
Q  82 tggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattg 181  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| || |||||  | ||||||  |||||| ||||| ||||||||||| ||||| |||    
T  8406032 tggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatagctttg 8405933  T
Q  182 aagattaacaagagtatggcaatagcaggtccatt 216  Q
    ||| | ||||||||| ||||||| ||||| |||||    
T  8405932 aaggtaaacaagagtttggcaattgcagggccatt 8405898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 8412149 - 8412014
Alignment:
Q  82 tggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattg 181  Q
    |||||||||||||||||||||||||||||||  ||||||   ||||||  | ||||| |||||   |||||| ||||| ||||||||||| ||||| |||    
T  8412149 tggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttg 8412050  T
Q  182 aagattaacaagagtatggcaatagcaggtccatta 217  Q
    ||| | ||||||||| ||||||| ||||| ||||||    
T  8412049 aaggtaaacaagagtttggcaattgcagggccatta 8412014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 8434247 - 8434112
Alignment:
Q  82 tggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattg 181  Q
    |||||||||||||||||||||||||||||||  ||||||   ||||||  | ||||| |||||   |||||| ||||| ||||||||||| ||||| |||    
T  8434247 tggatggagtgaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttg 8434148  T
Q  182 aagattaacaagagtatggcaatagcaggtccatta 217  Q
    ||| | ||||||||| ||||||| ||||| ||||||    
T  8434147 aaggtaaacaagagtttggcaattgcagggccatta 8434112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 217
Target Start/End: Complemental strand, 8417366 - 8417232
Alignment:
Q  83 ggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattga 182  Q
    ||||||||| ||||||||||||||||||||  ||||||   ||||||  | ||||| |||||   |||||| ||||| ||||||||||| ||||| ||||    
T  8417366 ggatggagtaaagaattagaaatggaaatgcaggaagtcgctgaagtgatcaagagaaaagattctgaagattatgacagacttggaaacatagcgttga 8417267  T
Q  183 agattaacaagagtatggcaatagcaggtccatta 217  Q
    || | ||||||||| ||||||| ||||| ||||||    
T  8417266 aggtaaacaagagtttggcaattgcagggccatta 8417232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 8404048 - 8403959
Alignment:
Q  107 gaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagt 196  Q
    ||||||| ||| || |||||||| || ||||| ||||| ||||| || ||||||||| | || ||||| ||||| |||||||||||||||    
T  8404048 gaaatgaaggaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagt 8403959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University