View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9240_high_10 (Length: 284)

Name: NF9240_high_10
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9240_high_10
NF9240_high_10
[»] chr7 (39 HSPs)
chr7 (1-148)||(45399876-45400022)
chr7 (1-166)||(9392657-9392827)
chr7 (1-167)||(29186770-29186935)
chr7 (1-147)||(43113780-43113925)
chr7 (1-153)||(12630670-12630821)
chr7 (1-148)||(18787254-18787400)
chr7 (2-97)||(44748479-44748574)
chr7 (1-145)||(18788429-18788572)
chr7 (5-145)||(43961043-43961179)
chr7 (17-148)||(32518534-32518665)
chr7 (1-97)||(19217733-19217829)
chr7 (1-97)||(44417563-44417659)
chr7 (5-167)||(43114934-43115095)
chr7 (4-97)||(29187946-29188039)
chr7 (1-97)||(44746832-44746928)
chr7 (1-148)||(37237094-37237239)
chr7 (5-127)||(43962456-43962577)
chr7 (1-97)||(7011739-7011836)
chr7 (1-97)||(7027097-7027194)
chr7 (1-82)||(13750567-13750648)
chr7 (50-167)||(37235939-37236055)
chr7 (1-97)||(9391625-9391721)
chr7 (1-96)||(32519666-32519761)
chr7 (7-97)||(13597255-13597345)
chr7 (4-97)||(44420439-44420531)
chr7 (1-97)||(26005457-26005553)
chr7 (1-97)||(27072570-27072666)
chr7 (1-97)||(27205647-27205743)
chr7 (1-93)||(44230533-44230625)
chr7 (5-97)||(48793432-48793524)
chr7 (7-97)||(3538489-3538579)
chr7 (54-160)||(9357650-9357755)
chr7 (44-97)||(13599173-13599226)
chr7 (8-167)||(48792556-48792709)
chr7 (8-97)||(13749116-13749204)
chr7 (8-96)||(3537539-3537627)
chr7 (125-166)||(13599121-13599162)
chr7 (56-97)||(44231777-44231818)
chr7 (1-50)||(4974015-4974064)
[»] chr3 (45 HSPs)
chr3 (1-168)||(47431036-47431199)
chr3 (4-167)||(50879796-50879958)
chr3 (1-158)||(37610619-37610775)
chr3 (1-154)||(31937141-31937296)
chr3 (1-153)||(28776554-28776705)
chr3 (1-97)||(43393969-43394065)
chr3 (1-154)||(52522033-52522184)
chr3 (1-97)||(28777603-28777699)
chr3 (1-153)||(55209888-55210041)
chr3 (1-154)||(46903487-46903636)
chr3 (5-153)||(11348333-11348479)
chr3 (4-94)||(5691014-5691104)
chr3 (4-97)||(53180720-53180813)
chr3 (1-97)||(5689825-5689921)
chr3 (4-96)||(31938224-31938316)
chr3 (1-93)||(54353129-54353221)
chr3 (1-148)||(35759097-35759243)
chr3 (1-97)||(17116308-17116403)
chr3 (5-97)||(17740940-17741032)
chr3 (5-97)||(19042260-19042352)
chr3 (1-97)||(46902437-46902533)
chr3 (1-148)||(35758110-35758255)
chr3 (1-96)||(54354308-54354403)
chr3 (1-131)||(2233188-2233317)
chr3 (5-94)||(17742211-17742301)
chr3 (5-94)||(19043531-19043621)
chr3 (7-97)||(21729104-21729194)
chr3 (2-97)||(23073290-23073385)
chr3 (1-97)||(47429726-47429824)
chr3 (5-97)||(2232712-2232804)
chr3 (4-96)||(10978114-10978206)
chr3 (5-97)||(11346922-11347014)
chr3 (5-97)||(37609431-37609523)
chr3 (7-97)||(55210824-55210914)
chr3 (7-97)||(21728022-21728112)
chr3 (5-83)||(53765896-53765974)
chr3 (8-97)||(47917529-47917618)
chr3 (4-96)||(52525276-52525368)
chr3 (41-96)||(53764896-53764951)
chr3 (7-97)||(10979091-10979181)
chr3 (55-148)||(43392766-43392858)
chr3 (45-97)||(50881032-50881084)
chr3 (1-62)||(46986044-46986103)
chr3 (103-160)||(23072246-23072303)
chr3 (131-167)||(33110792-33110828)
[»] chr8 (21 HSPs)
chr8 (1-167)||(9244171-9244336)
chr8 (5-148)||(30640907-30641049)
chr8 (1-147)||(20309029-20309174)
chr8 (1-147)||(21095662-21095807)
chr8 (8-144)||(521970-522102)
chr8 (5-148)||(26364851-26364990)
chr8 (1-148)||(26366060-26366206)
chr8 (5-148)||(30644574-30644712)
chr8 (4-97)||(9245347-9245440)
chr8 (1-97)||(41636937-41637033)
chr8 (7-167)||(34643812-34643966)
chr8 (1-96)||(41638070-41638164)
chr8 (8-97)||(34642778-34642866)
chr8 (1-93)||(20309971-20310064)
chr8 (1-93)||(21096604-21096697)
chr8 (33-160)||(22012275-22012407)
chr8 (33-97)||(22013175-22013239)
chr8 (5-83)||(43584518-43584596)
chr8 (5-97)||(43585861-43585952)
chr8 (55-89)||(43133992-43134026)
chr8 (16-97)||(20066194-20066275)
[»] chr6 (19 HSPs)
chr6 (1-166)||(32712461-32712622)
chr6 (1-147)||(32348907-32349049)
chr6 (1-153)||(11801203-11801354)
chr6 (1-148)||(34995457-34995603)
chr6 (5-97)||(21094515-21094607)
chr6 (1-145)||(34996633-34996773)
chr6 (4-145)||(3000668-3000802)
chr6 (5-97)||(27719846-27719937)
chr6 (1-97)||(32347914-32348010)
chr6 (1-97)||(32713799-32713895)
chr6 (44-97)||(21095295-21095348)
chr6 (1-97)||(18572991-18573086)
chr6 (8-97)||(19383071-19383157)
chr6 (6-96)||(7628435-7628526)
chr6 (55-160)||(18574167-18574271)
chr6 (55-97)||(29477900-29477942)
chr6 (109-158)||(29477959-29478008)
chr6 (1-133)||(13561379-13561510)
chr6 (1-61)||(29479146-29479206)
[»] chr5 (17 HSPs)
chr5 (1-116)||(9082085-9082200)
chr5 (4-148)||(4031930-4032075)
chr5 (1-147)||(18654403-18654551)
chr5 (5-148)||(12372424-12372566)
chr5 (5-147)||(13278095-13278239)
chr5 (1-97)||(19228944-19229040)
chr5 (1-93)||(9083216-9083308)
chr5 (1-96)||(39350562-39350657)
chr5 (1-97)||(4032941-4033037)
chr5 (1-97)||(19229989-19230085)
chr5 (1-142)||(6803497-6803636)
chr5 (1-97)||(39349586-39349682)
chr5 (1-152)||(18655517-18655664)
chr5 (1-138)||(39164162-39164295)
chr5 (1-72)||(13276925-13276996)
chr5 (39-97)||(12373633-12373691)
chr5 (1-133)||(38603634-38603765)
[»] chr4 (26 HSPs)
chr4 (4-167)||(18091689-18091851)
chr4 (1-153)||(34095520-34095671)
chr4 (1-148)||(22621973-22622116)
chr4 (5-148)||(17356471-17356613)
chr4 (1-167)||(10802995-10803160)
chr4 (1-142)||(22623018-22623155)
chr4 (1-97)||(38032336-38032432)
chr4 (1-153)||(8815212-8815369)
chr4 (1-97)||(7261459-7261555)
chr4 (5-97)||(35927032-35927124)
chr4 (1-97)||(38031274-38031370)
chr4 (5-97)||(5433323-5433415)
chr4 (1-97)||(8814241-8814336)
chr4 (5-97)||(23757886-23757978)
chr4 (1-96)||(48499470-48499565)
chr4 (1-97)||(10804111-10804207)
chr4 (1-69)||(35193140-35193208)
chr4 (5-82)||(17357794-17357871)
chr4 (7-79)||(35191929-35192001)
chr4 (1-97)||(48501240-48501335)
chr4 (43-153)||(36074655-36074764)
chr4 (8-97)||(35925804-35925893)
chr4 (3-146)||(56234889-56235030)
chr4 (1-45)||(56233830-56233874)
chr4 (44-97)||(48081483-48081536)
chr4 (1-97)||(54372847-54372943)
[»] chr1 (26 HSPs)
chr1 (4-167)||(52759472-52759634)
chr1 (1-167)||(17244281-17244446)
chr1 (1-153)||(7111336-7111487)
chr1 (1-147)||(45228381-45228526)
chr1 (1-97)||(5488783-5488879)
chr1 (1-147)||(52761466-52761608)
chr1 (5-96)||(5488611-5488702)
chr1 (1-166)||(51468749-51468913)
chr1 (8-148)||(21203124-21203263)
chr1 (1-93)||(40187708-40187800)
chr1 (1-97)||(51693253-51693349)
chr1 (1-138)||(51468445-51468581)
chr1 (1-97)||(7110332-7110428)
chr1 (1-96)||(50484913-50485008)
chr1 (1-93)||(18819368-18819460)
chr1 (5-148)||(45229472-45229611)
chr1 (8-97)||(1822022-1822111)
chr1 (41-147)||(38235017-38235122)
chr1 (7-97)||(52087690-52087780)
chr1 (5-94)||(1823215-1823304)
chr1 (1-97)||(50483616-50483712)
chr1 (4-96)||(52086736-52086826)
chr1 (5-72)||(49784931-49784998)
chr1 (7-97)||(47533770-47533860)
chr1 (1-57)||(17245621-17245677)
chr1 (33-160)||(18820623-18820755)
[»] scaffold0026 (1 HSPs)
scaffold0026 (49-167)||(104405-104522)
[»] scaffold0349 (1 HSPs)
scaffold0349 (5-97)||(9268-9359)
[»] scaffold0141 (2 HSPs)
scaffold0141 (1-96)||(31139-31234)
scaffold0141 (1-96)||(35202-35297)
[»] scaffold0049 (2 HSPs)
scaffold0049 (1-96)||(79515-79610)
scaffold0049 (1-96)||(83578-83673)
[»] scaffold0878 (2 HSPs)
scaffold0878 (1-148)||(2890-3039)
scaffold0878 (39-147)||(1912-2019)
[»] chr2 (10 HSPs)
chr2 (5-148)||(27892202-27892344)
chr2 (4-93)||(23833076-23833165)
chr2 (1-97)||(16602831-16602927)
chr2 (108-166)||(26388416-26388474)
chr2 (39-147)||(27891250-27891357)
chr2 (6-96)||(44800983-44801073)
chr2 (7-72)||(26388330-26388395)
chr2 (1-97)||(38243871-38243967)
chr2 (55-158)||(16604065-16604167)
chr2 (5-167)||(38242993-38243146)
[»] scaffold1425 (2 HSPs)
scaffold1425 (1-96)||(240-335)
scaffold1425 (1-96)||(1518-1613)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-97)||(25260-25357)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 45400022 - 45399876
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |      
T  45400022 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacgaaggtctatcagattttatagtgtatcactaacacctaattt-att 45399924  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
      |||| ||||||||||| | |||||||||||||||||||||||||||    
T  45399923 tactttcttcttcttcttccttcatcttcatctacattcatccttcat 45399876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 9392827 - 9392657
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||   |||||||||||       
T  9392827 ttggtccaattttgataattttaatcccctagaaaaagagaccgttggattacagaggtctatcagattttatagtgtatcaccggcacctaatttattt 9392728  T
Q  101 ccct-----ttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaa 166  Q
     | |     || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  9392727 actttcttcttcttcttcttcttccctcatcttcatctacattcatccttcatcaatattcatcaataaaa 9392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 29186770 - 29186935
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||| |||||||||||||||||| ||| || ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |      
T  29186770 ttggttcaattttgataattttaatcccttaaaaaatgagaccgtaggattacggaggtctatcagattttatagtgtatcaccaacacctaattt-att 29186868  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
       ||| ||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||    
T  29186869 tattttcttctttttcttccctcatcttcatctacattcattcttcatcaatattcatcaataaaac 29186935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 43113780 - 43113925
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||||||||| |||||||| |||||||||||||||||||| | |||||||||| |      
T  43113780 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacagaggtctatcagattttatagtgtatcaccagcacctaattt-att 43113878  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttca 147  Q
      |||| ||||||||||| | |||||||||||| |||||||||||||    
T  43113879 tgctttcttcttcttcttccatcatcttcatcttcattcatccttca 43113925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 12630670 - 12630821
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||| ||||||||||||||||| ||||||||||| ||||| |||||||||| ||||| || ||||||||||  || |||||||||||||||||| |      
T  12630670 ttggtctaattttgataattttaatcccctagaaaaagagactgttggattacagaggtatatcagattttattatggatcactaacacctaattt-att 12630768  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaata 153  Q
      |||| ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  12630769 tactttcttcttcttcttccctcatcttcatctacattcatccttcatcaata 12630821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 18787254 - 18787400
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||| || |||||||||| ||||||||| ||||| |||||| |      
T  18787254 ttggtccaattttgataattttaatcccctaaaaaaatagaccgttggattacggaggtttatcagattttatggtgtatcaccaacacttaattt-att 18787352  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
      |||| ||||||||||| |||||| ||||||||||| ||||||||||    
T  18787353 tactttcttcttcttcttccctcatattcatctacatccatccttcat 18787400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 44748574 - 44748479
Alignment:
Q  2 tggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  44748574 tggtccaattttgataattttaatcccctagaaaaggagactgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaattta 44748479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 18788572 - 18788429
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| || ||| ||||  |||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||| |      
T  18788572 ttggtccaattttgataattttaatcctctaaaaaaatagaccgttggattacgaaggtctatcagattttataatgtatcaccaacacctaattt-att 18788474  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatcctt 145  Q
      |||| |||||||  || ||||||||||||||||||||||||||    
T  18788473 tactttcttcttctctttccctcatcttcatctacattcatcctt 18788429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 43961043 - 43961179
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    |||||||||||||||||||| || ||| ||||  |||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||      |    
T  43961043 tccaattttgataattttaatcctctacaaaaacagaccgttggattacaaaggtctatcagattttatagtgtatcactaacacctaattta------t 43961136  T
Q  105 tta--ttcttcttctttcctcatcttcatctacattcatcctt 145  Q
    |||  ||||||||||| ||||||||||||||||| ||||||||    
T  43961137 ttactttcttcttcttccctcatcttcatctacactcatcctt 43961179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 32518534 - 32518665
Alignment:
Q  17 aattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttc 116  Q
    |||||||| |||||| ||||  |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||  |||   | ||| |||||    
T  32518534 aattttaatcccctaaaaaaaaagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaatttattccctcatcttcatcttc 32518633  T
Q  117 tttcctcatcttcatctacattcatccttcat 148  Q
    || ||| |||||||||| ||||||||||||||    
T  32518634 ttccctaatcttcatcttcattcatccttcat 32518665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 19217733 - 19217829
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||| ||||||||||||||||||  ||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||    
T  19217733 ttggtacaattttgataattttaataccctaaaaaaagagaccgttggattacggaggtctatcggattttatagtgtatcaccaacacctaattta 19217829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 44417563 - 44417659
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||||| |||| ||||  ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||    
T  44417563 ttggtccaattttgataattttaatcccctaaaaaaagagattgttggattacggaggtctatcagattttatagtctatcaccaacacctaattta 44417659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 167
Target Start/End: Complemental strand, 43115095 - 43114934
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    |||||||||||||||||||| ||| || ||||  ||||||||||||||| || ||||| |||||||||||||| ||||  |  ||||||||| |    ||    
T  43115095 tccaattttgataattttaatcccttaaaaaagaagaccgttggattactgaagtctatcagattttatagtgcatcatcataacctaattt-atttact 43114997  T
Q  105 ttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
    || ||||||||||| |||||||||||| | |||||||||||||| |||||||||| |||||||    
T  43114996 ttcttcttcttcttccctcatcttcattttcattcatccttcatcaatattcatcgataaaac 43114934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 29188039 - 29187946
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||| | |||||||| |||||||||||||| ||||| |||||||||||||    
T  29188039 gtccaattttgataattttaatcccctaaaaaaagagaccgttggattgcagaggtctatcagattttatagtgcatcaccaacacctaattta 29187946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 44746832 - 44746928
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| || |||||||||||||| |  |||||||||||||    
T  44746832 ttggtcaaattttgataattttaatcccttagaaaaagagaccgttggattacggaggtctatcatattttatagtgtattatcaacacctaattta 44746928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37237239 - 37237094
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||||||||||||||||||| || || ||| |||| |||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||| |      
T  37237239 ttggtccaattttgataattt-aatcctctaaaaaaagagatcgttggattacggaggtctatcagattttatagtgtatgaccaacacctaattt-att 37237142  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
      |||| ||| || |||| | |||||||||||| ||||||||||||||    
T  37237141 tactttcttcatcatcttccatcatcttcatcttcattcatccttcat 37237094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 43962577 - 43962456
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    |||||||||||||||||||| |  ||| ||||  |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |   |||    
T  43962577 tccaattttgataattttaatcatctaaaaaaacagaccgttggattacgaaggtctatcagattttatagtatatcactaacacctaattt-atttcct 43962479  T
Q  105 ttattcttcttctttcctcatct 127  Q
    || ||||||||||| ||||||||    
T  43962478 ttcttcttcttcttccctcatct 43962456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 7011739 - 7011836
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatga-gaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| ||  || ||||  | |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  7011739 ttggtccaattttgataattttaatccattaaaaaaaaaagaccgttggattacggaggtctataagattttatagtgtatcaccaacacctaattta 7011836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 7027097 - 7027194
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatga-gaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| ||  || ||||  | |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  7027097 ttggtccaattttgataattttaatccattaaaaaaaaaagaccgttggattacggaggtctataagattttatagtgtatcaccaacacctaattta 7027194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13750648 - 13750567
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatca 82  Q
    |||||||||||||||||||||||| |||||| ||||  |||||||||||||||| |||||||  ||||||||||||||||||    
T  13750648 ttggtccaattttgataattttaatcccctaaaaaaacagaccgttggattacgaaggtctattagattttatagtgtatca 13750567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 37235939 - 37236055
Alignment:
Q  50 ttacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttctttcctcatcttcatctacattcatccttcata 149  Q
    ||||||||||| | ||||||||| | |||||||| |||||||||||||    | |||| |||||||||| || ||||||||||||||||||||||||||     
T  37235939 ttacggaggtcaatcagattttacaatgtatcaccaacacctaatttatttac-tttactcttcttcttcccacatcttcatctacattcatccttcatc 37236037  T
Q  150 aatattcatcaataaaac 167  Q
    ||| ||||||||||||||    
T  37236038 aatgttcatcaataaaac 37236055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 9391625 - 9391721
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||| |||||||||||||||||| ||  || |||| ||||||||||||||||| ||||||| |||||||||||||||||||  |||||| ||||||    
T  9391625 ttggtacaattttgataattttaatcctttaaaaaaagagaccgttggattacgaaggtctatcagattttatagtgtatcatcaacaccaaattta 9391721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 32519761 - 32519666
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    ||||| ||||||| |||||||||| ||| || |||| |||||||||| |||||| |||||||||||||| |||||||| |||| ||||||||||||    
T  32519761 ttggttcaattttaataattttaatcccttaaaaaaagagaccgttgaattacgaaggtctaccagattgtatagtgtgtcaccaacacctaattt 32519666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 13597255 - 13597345
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||| || ||| |||| || | |||||||||| |||||||||  ||||||||||||||||||| |||||||||||||    
T  13597255 caattttgataattttaatcctctaaaaaaagatatcgttggattagggaggtctataagattttatagtgtatcaccaacacctaattta 13597345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 44420531 - 44420439
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||  ||||| |||| || |||||||||||||| ||||||| |||| ||||||||||||||| |||| ||||||||    
T  44420531 gtccaattttgataattttaatgccctaaaaaaagataccgttggattacgaaggtctatcaga-tttatagtgtatcaccaacatctaattta 44420439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 26005457 - 26005553
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||| |||||||||||||||||  || ||| |||| ||||||||||||||||  |||||||  ||||||||||||||||||| ||||| |||||||    
T  26005457 ttggttcaattttgataattttactccactaaaaaaagagaccgttggattacaaaggtctataagattttatagtgtatcaccaacacgtaattta 26005553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 27072666 - 27072570
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||| ||||||||||||||||| || ||| ||||  | ||||||||||||| ||||||||  |||||||||||| |||||| |||||||||||||    
T  27072666 ttggtcaaattttgataattttaatccactaaaaaaaaaaaccgttggattacagaggtctataagattttatagtttatcaccaacacctaattta 27072570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 27205647 - 27205743
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||| ||||||||||||||||| || ||| ||||  | ||||||||||||| ||||||||  |||||||||||| |||||| |||||||||||||    
T  27205647 ttggtcaaattttgataattttaatccactaaaaaaaaaaaccgttggattacagaggtctataagattttatagtctatcaccaacacctaattta 27205743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 44230533 - 44230625
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaa 93  Q
    ||||||||||||| ||||||| || ||||||  ||| |||||||||||||||| |||||||| ||||||||| |||||||||  |||||||||    
T  44230533 ttggtccaattttaataatttcaatcccctacgaaaagagaccgttggattacagaggtctatcagattttacagtgtatcatcaacacctaa 44230625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 48793524 - 48793432
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||| | |||| |||| ||||||||||||||||  |||| ||  ||||||||||||||||||| |||||| ||||||    
T  48793524 tccaattttgataattttaatctcctaaaaaaagagaccgttggattacaaaggtgtataagattttatagtgtatcaccaacaccaaattta 48793432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 3538579 - 3538489
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||  |||||| |||| |||||||||||||||||||| |||| || ||||||  ||||||||| |||| ||||||||    
T  3538579 caattttgataattttagtcccctaaaaaaagagaccgttggattacggagatctatcaaattttacggtgtatcaccaacatctaattta 3538489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 9357755 - 9357650
Alignment:
Q  54 ggaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttctttcctcatcttcatctacattcatccttcataaata 153  Q
    |||||| |||||||| |||||||||||||| |||||||||||||    | ||| ||| |||||||||||||||||||||| |||||| ||||||| |||     
T  9357755 ggaggtttaccagatcttatagtgtatcaccaacacctaatttatttac-tttcttcatcttctttcctcatcttcatcttcattcaaccttcatcaatc 9357657  T
Q  154 ttcatca 160  Q
    |||||||    
T  9357656 ttcatca 9357650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 13599226 - 13599173
Alignment:
Q  44 gttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  13599226 gttggattacggaggtctatcagattttatagtgtatcagtaacacctaattta 13599173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 48792556 - 48792709
Alignment:
Q  8 aattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaaccccttta 107  Q
    ||||||||||||||||| | |||| |||| ||||||||||||||||   ||| ||  ||||||||||||||||||| |||||| ||||| |    ||||     
T  48792556 aattttgataattttaatctcctaaaaaaagagaccgttggattacaagggtgtataagattttatagtgtatcaccaacaccaaattt-atttactttc 48792654  T
Q  108 ttcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
    ||||  ||||| ||||||||   ||||| || ||||||||| ||||||||||||||||||    
T  48792655 ttct--ttcttccctcatct---tctacgtttatccttcatcaatattcatcaataaaac 48792709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 13749116 - 13749204
Alignment:
Q  8 aattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||||||| || ||| ||||||||||||||| |||||| |||||||  | | ||| ||||||||||| |||||||||||||    
T  13749116 aattttgataattttaatcctctaaaaaatgagaccgttgaattacgtaggtcta-taaaatttctagtgtatcaccaacacctaattta 13749204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 3537539 - 3537627
Alignment:
Q  8 aattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||| |||||||||| |||||| |||| || |||||||||||||| |||||||  | |||||||||| |||||| | ||||||||||    
T  3537539 aattttaataattttaatcccctaaaaaaagaaaccgttggattacgaaggtctataaaattttatagtatatcaccatcacctaattt 3537627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 13599162 - 13599121
Alignment:
Q  125 tcttcatctacattcatccttcataaatattcatcaataaaa 166  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  13599162 tcttcatcttcattcatccttcatcaatattcatcaataaaa 13599121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 44231818 - 44231777
Alignment:
Q  56 aggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||||||| ||||||| |||||    
T  44231818 aggtctaccagattttatagtgtatcaccaacacctgattta 44231777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4974064 - 4974015
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggat 50  Q
    |||||||||||||  | |||||||||||| |||||| |||||||||||||    
T  4974064 ttggtccaattttattcattttaacccccaagaaaaggagaccgttggat 4974015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 47431199 - 47431036
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||  |||||||||||||||||||  ||||||||||||       
T  47431199 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattatggaggtctattagattttatagtgtatcacccacacctaattta--- 47431103  T
Q  101 cccttta--ttcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaact 168  Q
       ||||  ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  47431102 ---tttactttcttcttcttccatcatcttcatctacattcatccttcattaatattcatcaataaaact 47431036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 50879796 - 50879958
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccc 103  Q
    ||||||||||||||||||||| ||| |||||||  | | |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||     ||    
T  50879796 gtccaattttgataattttaatcccatagaaaaaaaaatcgttagattacggaggtctatcagattttatagtgtatcaccaacacctaattt-gtttcc 50879894  T
Q  104 tttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  50879895 tttcttcttcttctttcctcatcttcatctatattcatccttcatcaatattcatcaataaaac 50879958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 37610775 - 37610619
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| ||||  |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |      
T  37610775 ttggtccaattttgataattttaatcccctaaaaaaaaagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt-att 37610677  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaatattcat 158  Q
      |||| ||||||||||| |||||||||| ||| |||||||||||||| |||||||||    
T  37610676 tactttcttcttcttcttccctcatcttcgtcttcattcatccttcatcaatattcat 37610619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 31937141 - 31937296
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaa--tttaa 98  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  |||      
T  31937141 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattttttt 31937240  T
Q  99 acccctttattcttcttctttcctcatcttcatctacattcatccttcataaatat 154  Q
    ||    || ||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  31937241 actttcttcttcttcttcttccctcatcttcatctacattcatcattcatcaatat 31937296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 28776554 - 28776705
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| |||  ||||||||||||||||||||||||| ||||||||||| |||||||  |||||||||||| |      
T  28776554 ttggtccaattttgataattttaatcccctaaaaacagagaccgttggattacggaggtctatcagattttataatgtatcatcaacacctaattt-att 28776652  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaata 153  Q
      |||| ||||||||||| | |||||||||||| |||||||||||||| ||||    
T  28776653 tactttcttcttcttcttccatcatcttcatctccattcatccttcatcaata 28776705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 43394065 - 43393969
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||    
T  43394065 ttggtccaattttgataattttaaccccctaaaaaaagagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattta 43393969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 52522033 - 52522184
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||| ||||| |||||| ||||  |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |      
T  52522033 ttggtccaattttgataactttaatcccctaaaaaaa-agacagttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt-att 52522130  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaatat 154  Q
      |||| ||||||||||| ||||||||||||||||||||| | ||||| |||||    
T  52522131 tactttcttcttcttcttccctcatcttcatctacattcagcattcatcaatat 52522184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28777699 - 28777603
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||    
T  28777699 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaattta 28777603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 55209888 - 55210041
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta--a 98  Q
    |||||||||||||||||||||||| || | | |||| |||||| |||||||||||||||||| |||| |||||||||||| || |||||||||||||       
T  55209888 ttggtccaattttgataattttaatccacgaaaaaa-gagaccattggattacggaggtctatcagaatttatagtgtattaccaacacctaatttattt 55209986  T
Q  99 acccctttattcttcttctttcctcatcttcatctacattcatccttcataaata 153  Q
    ||    || ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  55209987 actttattcttcttcttcttccctcatcttcatctacattcatccttcatcaata 55210041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 46903636 - 46903487
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||| |||||||||| ||||||| |||||| ||||  ||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||       
T  46903636 ttggtacaattttgatgattttaatcccctaaaaaaaaagaccgttggattacggaggtctattagattttatagtgtatcaccaacacctaattta--- 46903540  T
Q  101 cccttta--ttcttcttctttcctcatcttcatctacattcatccttcataaatat 154  Q
       ||||  ||||||||||| | |||| ||||||| |||||||||||||| |||||    
T  46903539 ---tttactttcttcttcttccatcattttcatcttcattcatccttcatcaatat 46903487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 11348479 - 11348333
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    ||||||||||||||||||||  || ||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||  |||||||| ||||    ||    
T  11348479 tccaattttgataattttaattccttagaaaaagagaccgttgaattacggaggtctatcagattttatagtatatcac-cacacctaa-ttaatttact 11348382  T
Q  105 ttattcttcttctttcctcatcttcatctacattcatccttcataaata 153  Q
    || ||||||||||| ||| |||||| |||||||||||||||||| ||||    
T  11348381 ttcttcttcttcttcccttatcttcctctacattcatccttcatcaata 11348333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 5691104 - 5691014
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaat 94  Q
    |||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||    
T  5691104 gtccaattttgataatttaaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaat 5691014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 53180813 - 53180720
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||| |||||||||| || ||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  53180813 gtccaattttaataattttaatcctctaaaaaaggagaccgttggattacggaggtctatcagattgtatagtgtatcaccaacacctaattta 53180720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 5689825 - 5689921
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| ||  || || | ||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||    
T  5689825 ttggtccaattttgataattttaatcctttaaaacaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacttaattta 5689921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 31938316 - 31938224
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||||| |||||||||| |||||| |||| ||||||||||||||||| |||||||  ||||||||||||||||||| ||||||||||||    
T  31938316 gtccaattttaataattttaatcccctaaaaaaagagaccgttggattacgaaggtctataagattttatagtgtatcaccaacacctaattt 31938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 54353129 - 54353221
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaa 93  Q
    ||||||||||||| |||||||||| |||| | |||| ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  54353129 ttggtccaatttttataattttaatccccgaaaaaaagagaccgttggattacgaaggtctatcagattttatcgtgtatcactaacacctaa 54353221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 35759243 - 35759097
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |    | ||||  |||||||||||||||| | ||||| ||||||||| |||||||||| |||||||||||| |      
T  35759243 ttggtccaattttgataattttaatctaaaaaaaaaacagaccgttggattacgaatgtctatcagattttacagtgtatcaccaacacctaattt-att 35759145  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
      |||| ||||||||||| ||||||||||||||||||||||| |||||    
T  35759144 tactttcttcttcttcttccctcatcttcatctacattcatcattcat 35759097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 17116308 - 17116403
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||| |||||||||||||||||| ||| || ||||||| |||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||    
T  17116308 ttggttcaattttgataattttaatccc-taaaaaatgacaccgttggattacggaggtccatcagagtttatagtgtatcaccaacacctaattta 17116403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 17740940 - 17741032
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||| ||  || |||  |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  17740940 tccaattttgataattttaatcctttaaaaatagagaccgtcggattacggaggtctatcagattttatagtgtatcaccaacacctaattta 17741032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 19042260 - 19042352
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||| ||  || |||  |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  19042260 tccaattttgataattttaatcctttaaaaatagagaccgtcggattacggaggtctatcagattttatagtgtatcaccaacacctaattta 19042352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 46902437 - 46902533
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||| |||||||||||||||||| |||||| || | ||||  ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  46902437 ttggtgcaattttgataattttaatcccctaaaagaagagattgttagattacggaggtctatcagattttatagtgtatcactaacaccaaattta 46902533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 35758110 - 35758255
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| ||   | ||||  | |||||||||||||| | ||||| ||||||||| |||||||||| |||||||||||| |      
T  35758110 ttggtccaattttgataattttaatccaaaaaaaaaacaaaccgttggattacgaatgtctatcagattttacagtgtatcaccaacacctaattt-att 35758208  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
      |||| ||||||||||| |||| ||||||||||||||||||||||||    
T  35758209 tactttcttcttcttcttccctc-tcttcatctacattcatccttcat 35758255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 54354403 - 54354308
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    ||||||||||||||||||||||||  ||||| |||| |||||| ||||||||  |||||||| ||||||||| |||||||||| ||||||||||||    
T  54354403 ttggtccaattttgataattttaattccctataaaaagagaccattggattatagaggtctatcagattttacagtgtatcaccaacacctaattt 54354308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 2233317 - 2233188
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| || ||| |||| |||| |||||||||| |||| ||||  ||||||||||| ||||||| |||||||||||| ||     
T  2233317 ttggtccaattttgataattttaatcctctaaaaaaagagatcgttggattatggagatctataagattttatagcgtatcaccaacacctaattt-aat 2233219  T
Q  101 ccctttattcttcttctttcctcatcttcat 131  Q
      |||| ||||||||||| | ||||||||||    
T  2233218 tactttcttcttcttcttccatcatcttcat 2233188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 17742301 - 17742211
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattt-tatagtgtatcactaacacctaat 94  Q
    |||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||||| || |||||||||  ||||||||||    
T  17742301 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagatttatacagtgtatcaacaacacctaat 17742211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 19043621 - 19043531
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattt-tatagtgtatcactaacacctaat 94  Q
    |||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||||| || |||||||||  ||||||||||    
T  19043621 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagatttatacagtgtatcaacaacacctaat 19043531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 21729194 - 21729104
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||| || ||| ||||||||||| |||||||| | |||||||||| ||||||||||||||||  |||||||||||||    
T  21729194 caattttgataattttaatcctctaaaaaatgagaccattggattatgaaggtctaccatattttatagtgtatcatcaacacctaattta 21729104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 23073385 - 23073290
Alignment:
Q  2 tggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||| |||||||||||||||||| |||||| |||| |||||||||| ||||||||||| || || ||||||  ||||||||| |||||||||||||    
T  23073385 tggttcaattttgataattttaatcccctaaaaaaagagaccgttgaattacggaggtgtatcaaattttacggtgtatcaccaacacctaattta 23073290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 47429726 - 47429824
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatga--gaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||||| ||||  |  ||| |||||||||||||||||||  ||||||||||||||||||| |||| ||||||||    
T  47429726 ttggtccaattttgataattttaatcccctaaaaaaaaaaagactgttggattacggaggtctattagattttatagtgtatcaccaacatctaattta 47429824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 2232712 - 2232804
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||| |||||||||| |||||||||||  ||||| ||||||||||||||||||  ||||||||  ||||||||  |||||||||||||    
T  2232712 tccaattttaataattttaatcccctagaaaaaaagaccattggattacggaggtctatgagattttacggtgtatcagcaacacctaattta 2232804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 10978114 - 10978206
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||||| |||||||||| |||||| |||| || |||||||||||||| |||||||  | ||||||||||||||||| | ||||||||||    
T  10978114 gtccaattttaataattttaatcccctaaaaaaagaaaccgttggattacgaaggtctataaaattttatagtgtatcaccatcacctaattt 10978206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 11346922 - 11347014
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||| |||||  |||  |||||| |||||||| | |||||||||| ||| ||||||||||||| |||||||||||||    
T  11346922 tccaattttgataattttaatcccctgaaaagagagaccattggattatgaaggtctaccatattgtatagtgtatcaccaacacctaattta 11347014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 37609431 - 37609523
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||| |||||||||| |||||| |||| ||||||||||||||| |||||||||  |||||| ||||||| |||  |||||||||||||    
T  37609431 tccaattttaataattttaatcccctaaaaaaagagaccgttggattagggaggtctataagatttaatagtgtctcatcaacacctaattta 37609523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 55210914 - 55210824
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||| || ||| |||| || || |||| ||||||||| |||| ||||||||||| |||||||| ||||| |||||||    
T  55210914 caattttgataattttaatccactaaaaaaagatactgttgaattacggagatctatcagattttataatgtatcaccaacacataattta 55210824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 21728022 - 21728112
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||| | |||| ||||  |||| ||| ||||||| ||||||| |  |||||||| |||||||| |||||||||||||    
T  21728022 caattttgataattttaatctcctaaaaaagtagactgttagattacgaaggtctatctcattttataatgtatcaccaacacctaattta 21728112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 53765974 - 53765896
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcac 83  Q
    ||||||||| |||||||||| |||||| |||  || ||  ||||||||||||||||||| |||||||| ||||||||||    
T  53765974 tccaattttaataattttaatcccctaaaaagagaaactattggattacggaggtctacgagattttacagtgtatcac 53765896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 47917618 - 47917529
Alignment:
Q  8 aattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||| |||||||||| |||||| |||   |||  |||||||||||||||| || ||||||||||||||||| || |||||| ||||||    
T  47917618 aattttaataattttaatcccctaaaaataaagattgttggattacggaggtttatcagattttatagtgtattaccaacaccgaattta 47917529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 52525368 - 52525276
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||||| |||||||||| |||||| |||| ||||||||||||||| | ||||  |  |||||||||| ||| |||| |||| |||||||    
T  52525368 gtccaattttaataattttaatcccctaaaaaaagagaccgttggattatgaaggttaataagattttataatgtgtcaccaacatctaattt 52525276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 53764896 - 53764951
Alignment:
Q  41 accgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    ||||||| |||||||||||||| |||||||||| ||||||||| ||||| ||||||    
T  53764896 accgttgaattacggaggtctatcagattttatggtgtatcaccaacacttaattt 53764951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 10979181 - 10979091
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||  ||| |  |||| |||||| ||||||||||||||| || || ||||||  ||||||||| |||| ||||||||    
T  10979181 caattttgataattttagtccctttaaaaaagagaccattggattacggaggtttatcaaattttacggtgtatcaccaacatctaattta 10979091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 43392766 - 43392858
Alignment:
Q  55 gaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    |||||||| |||||||||||||||| ||| |||||| ||||||      ||| ||||||||||| |||||||||||||| |||||| |||||||    
T  43392766 gaggtctatcagattttatagtgtaccaccaacaccaaatttatttat-tttcttcttcttcttccctcatcttcatcttcattcaaccttcat 43392858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 50881084 - 50881032
Alignment:
Q  45 ttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||| | |||||||||| ||||||||||||| ||| |||||||||||||    
T  50881084 ttggattatgaaggtctaccatattttatagtgtaccaccaacacctaattta 50881032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 46986103 - 46986044
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtcta 62  Q
    |||||| ||||||||||||||||| ||  || ||||  ||||||||||||||||||||||||    
T  46986103 ttggtcaaattttgataattttaatcctttaaaaaa--agaccgttggattacggaggtcta 46986044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 23072246 - 23072303
Alignment:
Q  103 ctttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatca 160  Q
    |||| ||||||||||| |||||||||||||| ||||||  |||||| ||| |||||||    
T  23072246 ctttcttcttcttcttccctcatcttcatcttcattcaagcttcatcaatcttcatca 23072303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 33110792 - 33110828
Alignment:
Q  131 tctacattcatccttcataaatattcatcaataaaac 167  Q
    |||||||||||||||||| |||||||||||| |||||    
T  33110792 tctacattcatccttcatcaatattcatcaacaaaac 33110828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 9244171 - 9244336
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||| |||||||||||||||||| ||| || ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| |      
T  9244171 ttggttcaattttgataattttaatcccttaaaaaatgagaccgtaggattacggaggtctatcagattttatagtgtatcaccaacacctaattt-att 9244269  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
       ||| ||||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||    
T  9244270 tattttcttctttttcttccctcatcttcatctacattcattcttcatcaatattcatcaataaaac 9244336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 30640907 - 30641049
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    ||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |    ||    
T  30640907 tccaattttaataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtatcaccaacacctaattt-atttact 30641005  T
Q  105 ttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    || ||||||||||| ||| |||||||||||||||||||||||||    
T  30641006 ttcttcttcttcttcccttatcttcatctacattcatccttcat 30641049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 20309029 - 20309174
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||||| || |||||||| |||||||||||||||||||| || ||||||||| |      
T  20309029 ttggtccaattttgataattttgatcccctagaaaaagagaccgttggatcactgaggtctatcagattttatagtgtatcaccaatacctaattt-att 20309127  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttca 147  Q
      |||| ||||||||||| | |||||||||||| |||||||||||||    
T  20309128 tactttcttcttcttcttccatcatcttcatctccattcatccttca 20309174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 21095662 - 21095807
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||||||| || |||||||| |||||||||||||||||||| || ||||||||| |      
T  21095662 ttggtccaattttgataattttgatcccctagaaaaagagaccgttggatcactgaggtctatcagattttatagtgtatcaccaatacctaattt-att 21095760  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttca 147  Q
      |||| ||||||||||| | |||||||||||| |||||||||||||    
T  21095761 tactttcttcttcttcttccatcatcttcatctccattcatccttca 21095807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 522102 - 521970
Alignment:
Q  8 aattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaaccccttta 107  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||| ||| |||||||||      ||||    
T  522102 aattttgataattttaatcccctagaaaaagagactgttggattacggaggtctatcaaattttatagtgtatcaccaacccctaattta------ttta 522009  T
Q  108 --ttcttcttctttcctcatcttcatctacattcatcct 144  Q
      ||||||||||| |||||||||||||||||||||||||    
T  522008 ctttcttcttcttccctcatcttcatctacattcatcct 521970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 26364851 - 26364990
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    |||||||||||||||||||| || ||| |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||      |    
T  26364851 tccaattttgataattttaatcctctaaaaaaagagaccgttggattacagaggtctatcagattttataatgtatcaccaacacctaattta------t 26364944  T
Q  105 tta--ttcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    |||  ||||||||||| |||||||||||||||| ||||||||||||    
T  26364945 ttagtttcttcttcttccctcatcttcatctacgttcatccttcat 26364990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 26366206 - 26366060
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||| |||| |||||||||| |||||| ||||  |||||||| |||||||||||||||  ||||||||||||||||||| ||||| |||||| |      
T  26366206 ttggtccatttttaataattttaatcccctaaaaaaaaagaccgttagattacggaggtctattagattttatagtgtatcaccaacacataattt-att 26366108  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
      |||| ||||||||||| ||| |||||| ||||||||||||||||||    
T  26366107 tactttcttcttcttcttccctaatcttcttctacattcatccttcat 26366060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 30644712 - 30644574
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    |||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||| || |||||||| || ||||| |||||||||||||      |    
T  30644712 tccaattttgataattttaatcctctaaaaaa-gagaccgttggattacggaggtctatcaaattttataatggatcaccaacacctaattta------t 30644620  T
Q  105 tta--ttcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    |||  || |||||||| |||||||||||||||||||||||||||||    
T  30644619 ttagttttttcttcttccctcatcttcatctacattcatccttcat 30644574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 9245440 - 9245347
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||| |||||||||| |||||| |||| |||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||    
T  9245440 gtccaatttttataattttaatcccctaaaaaaagagaccgttggattgctgaggtctatcagattttatagtgtatcaccaacacctaattta 9245347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 41636937 - 41637033
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||| ||| |||||||||| |||||| |||| ||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||    
T  41636937 ttggtccaacttttataattttaatcccctaaaaaaagagaccgttggattacggaagtctatcagattttatcgtgtatcaccaacacctaattta 41637033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 34643966 - 34643812
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaaccccttt 106  Q
    |||||||||||||||||| |||||| ||||  |||||||||||||   |||||||| |||||||||| | ||||||| |||||||||||||      ||     
T  34643966 caattttgataattttaatcccctaaaaaa--agaccgttggatt---gaggtctatcagattttatggcgtatcaccaacacctaatttatttggattc 34643872  T
Q  107 attcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
     ||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| |||||    
T  34643871 -ttcttcttcttccctcatcttcatctacattaatccttcatcaatattcatcaacaaaac 34643812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 41638164 - 41638070
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    ||||||||||||| |||||||||| |||||| |||| |||||  ||||||||| |||||||| ||  |||||||||||||||| ||||||||||||    
T  41638164 ttggtccaattttaataattttaatcccctaaaaaa-gagacaattggattacagaggtctatcatgttttatagtgtatcaccaacacctaattt 41638070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 34642778 - 34642866
Alignment:
Q  8 aattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||||||| |||||| ||||  | ||||||||||| |||||||||| ||||||||||||| |||||| |||| ||||||||    
T  34642778 aattttgataattttaatcccctaaaaaaaaa-accgttggattgcggaggtctatcagattttatagtatatcaccaacatctaattta 34642866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 20310064 - 20309971
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatga-gaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaa 93  Q
    ||||| |||||||||||||||||| ||| |||||||  | ||||||||||||| | ||||||  ||||||||||||||||||||  ||||||||    
T  20310064 ttggttcaattttgataattttaatcccttagaaaaaaaagaccgttggattatgaaggtctgtcagattttatagtgtatcacctacacctaa 20309971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 21096697 - 21096604
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatga-gaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaa 93  Q
    ||||| |||||||||||||||||| ||| |||||||  | ||||||||||||| | ||||||  ||||||||||||||||||||  ||||||||    
T  21096697 ttggttcaattttgataattttaatcccttagaaaaaaaagaccgttggattatgaaggtctgtcagattttatagtgtatcacctacacctaa 21096604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 22012275 - 22012407
Alignment:
Q  33 aaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccctt-----tattcttcttctttcctcatct 127  Q
    |||| |||| |||||||| |  ||||||||||||||||||||||||||||| ||||||| |||||    | ||     | ||||||||||| ||||||||    
T  22012275 aaaaggagatcgttggataagtgaggtctaccagattttatagtgtatcaccaacacctgatttatttactttcttcttcttcttcttcttccctcatct 22012374  T
Q  128 tcatctacattcatccttcataaatattcatca 160  Q
    | |||| |||||| ||||||| ||| |||||||    
T  22012375 ttatcttcattcaaccttcatcaatcttcatca 22012407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 22013239 - 22013175
Alignment:
Q  33 aaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||| |||| |||||||| |  ||||||||||||||||||||||||||||| ||||||| |||||    
T  22013239 aaaaggagatcgttggataagtgaggtctaccagattttatagtgtatcaccaacacctgattta 22013175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 43584518 - 43584596
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcac 83  Q
    |||||||||||||||||||| |   || |||| ||||||||||||||||  | ||||| ||||||||||| ||||||||    
T  43584518 tccaattttgataattttaatcttttaaaaaaagagaccgttggattacaaaagtctatcagattttataatgtatcac 43584596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 43585952 - 43585861
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||| |||||||||| ||  || ||||  ||||| |||||||| | |||||||||| ||||||||||||||||  || ||||||||||    
T  43585952 tccaattttaataattttaatcctttaaaaaaa-agaccattggattatgaaggtctaccatattttatagtgtatcatcaatacctaattta 43585861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 43134026 - 43133992
Alignment:
Q  55 gaggtctaccagattttatagtgtatcactaacac 89  Q
    ||||||||||||||||||||||||||||| |||||    
T  43134026 gaggtctaccagattttatagtgtatcaccaacac 43133992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 20066194 - 20066275
Alignment:
Q  16 taattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||| || || |||| ||||||||||||| |  ||| || | ||||||| | |||||||||| |||||||||||||    
T  20066194 taattttaactccttaaaaaaagagaccgttggataaaagagatccatcagatttaacagtgtatcaccaacacctaattta 20066275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 32712461 - 32712622
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| || ||||||||||||| ||| ||||||||| |||       
T  32712461 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtaccaccaacacctaactta--- 32712557  T
Q  101 cccttta--ttcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaa 166  Q
       ||||  ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  32712558 ---tttactttcttcttcttccctcatcttcatctacattcatccttcatcaatgttcatcaataaaa 32712622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 32349049 - 32348907
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||       
T  32349049 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaattta--- 32348953  T
Q  101 cccttta--ttcttcttctttcctcatcttcatctacattcatccttca 147  Q
       ||||  ||||||||||| | |||||||||||| |||||||||||||    
T  32348952 ---tttactttcttcttcttccatcatcttcatcttcattcatccttca 32348907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 11801354 - 11801203
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| |      
T  11801354 ttggtccaattttgataattttaatcccctcaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtatcattaacacctaattt-att 11801256  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaata 153  Q
      |||| || |||||||| | |||||||||||| |||||||||||||| ||||    
T  11801255 tactttcttattcttcttccatcatcttcatctccattcatccttcatcaata 11801203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 34995457 - 34995603
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||||||||||| |||||||||| |||||| ||||  |||||||| ||||||| ||||||| |||||||||||||||||||| |||| ||||||| |      
T  34995457 ttggtccaattttaataattttaatcccctaaaaaaacagaccgttagattacgaaggtctatcagattttatagtgtatcaccaacatctaattt-att 34995555  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
      |||| ||||||||||| |||||||||||||| ||||||||||||||    
T  34995556 tactttcttcttcttcttccctcatcttcatctgcattcatccttcat 34995603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 21094515 - 21094607
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  21094515 tccaattttgataactttaatcccctaaaaaaagagaccgttggattacggaggtctactagattttatagtgtatcaccaacacctaattta 21094607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 34996773 - 34996633
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| | |||| ||||  |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||       
T  34996773 ttggtccaattttgataattttaatctcctaaaaaaacagaccgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaattta--- 34996677  T
Q  101 cccttta--ttcttcttctttcctcatcttcatctacattcatcctt 145  Q
       ||||  ||||||||||| |||||||||||||||| ||| |||||    
T  34996676 ---tttactttcttcttcttccctcatcttcatctaccttcttcctt 34996633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 3000802 - 3000668
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccc 103  Q
    ||||||||||||||||||||| |||||| |||   ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||          
T  3000802 gtccaattttgataattttaatcccctaaaaacacagatcgttggattacgaaggtctatcagattttatagtgtatcactaacacctaattta------ 3000709  T
Q  104 tttattcttcttctttcctcatcttcatctacattcatcctt 145  Q
    |||| | |||||||| | ||||||||||||||||||||||||    
T  3000708 tttact-ttcttcttccatcatcttcatctacattcatcctt 3000668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 27719846 - 27719937
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  27719846 tccaattttgatgattttaatcccctaaaaaa-gagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattta 27719937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 32347914 - 32348010
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||||| |||| |||| ||||||||||||| |||||| |||||||||||||||||||  |||||||||||||    
T  32347914 ttggtccaattttgataattttaatcccctaaaaaaagagaacgttggattacgggggtctatcagattttatagtgtatcatcaacacctaattta 32348010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 32713895 - 32713799
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||||||  |||||||| |||||||||| |||||||||||||    
T  32713895 ttggtccaattttgataattttaatcccctaaaaaaagtgaccgttggattacggaggtctataagattttacagtgtatcaccaacacctaattta 32713799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 21095348 - 21095295
Alignment:
Q  44 gttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21095348 gttggattacggaggtctaccagattttatagtgtatcaccaacacctaattta 21095295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 18572991 - 18573086
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||| ||||||||||||||||||| |||||| |||| || || ||||||||||||||||||| || |||||| |||||||||| ||||| |||||||    
T  18572991 ttgggccaattttgataattttaatcccctaaaaaa-gacactgttggattacggaggtctatcaaattttacagtgtatcaccaacacataattta 18573086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 19383157 - 19383071
Alignment:
Q  8 aattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||  ||||| |||  |||||||||||||||||  |||||| |||||||||||||||||||| |||| ||||||||    
T  19383157 aattttgataattttaatgccctaaaaa--gagaccgttggattacgatggtctatcagattttatagtgtatcac-aacatctaattta 19383071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 7628435 - 7628526
Alignment:
Q  6 ccaattttgataattttaaccccctagaaaatga-gaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||||||||||| || |||||| ||||  | ||||||| ||||| |||| |||||||||||| | |||||||||| ||||||||||||    
T  7628435 ccaattttgataatttcaatcccctaaaaaaaaaagaccgttagattatggagatctaccagatttcacagtgtatcaccaacacctaattt 7628526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 18574271 - 18574167
Alignment:
Q  55 gaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttctttcctcatcttcatctacattcatccttcataaatat 154  Q
    |||||||| |||||||||||||||| ||| ||||||  |||||    | ||| ||||||||||| ||||||| |||||| |||||| ||||||| ||| |    
T  18574271 gaggtctatcagattttatagtgtaccaccaacaccggatttatttac-tttcttcttcttcttccctcatcctcatcttcattcaaccttcatcaatct 18574173  T
Q  155 tcatca 160  Q
    ||||||    
T  18574172 tcatca 18574167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 29477900 - 29477942
Alignment:
Q  55 gaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||    
T  29477900 gaggtctaccagattttatggtgtatcaccaacacctgattta 29477942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 29477959 - 29478008
Alignment:
Q  109 tcttcttctttcctcatcttcatctacattcatccttcataaatattcat 158  Q
    |||||||||| |||||||||||||| |||||| ||||||| ||| |||||    
T  29477959 tcttcttcttccctcatcttcatcttcattcaaccttcatcaatcttcat 29478008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 13561379 - 13561510
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||||| |||||  ||||||||| | |||  ||||  ||| |||||||| | | ||||| | ||||| | |||||||||||| ||||||||||||| |     
T  13561379 ttggtcctattttattaattttaaactcctcaaaaagaagatcgttggataaagaaggtccatcagatctaatagtgtatcaccaacacctaatttatat 13561478  T
Q  101 ccctttattcttcttctttcctcatcttcatct 133  Q
    | |||| ||| |||||||| ||||||| |||||    
T  13561479 cactttcttcatcttcttt-ctcatctccatct 13561510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29479206 - 29479146
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtct 61  Q
    ||||||||||||| ||||||| || ||||||  ||| ||||| |||||||||| |||||||    
T  29479206 ttggtccaattttaataatttcaatcccctacgaaaagagacagttggattacagaggtct 29479146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 9082085 - 9082200
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||| ||||||||||||||||||    
T  9082085 ttggtccaattttgataattttaatcccctagaaaatgagaccgttggatcacggatgtctatcagattttatagtatatcgctaacacctaatttaaac 9082184  T
Q  101 ccctttattcttcttc 116  Q
    |||||||||| |||||    
T  9082185 ccctttattcatcttc 9082200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 4031930 - 4032075
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta-aaccc 102  Q
    ||||||||||||||||||||| || ||| |||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |        
T  4031930 gtccaattttgataattttaatccactaaaaaaagagaccgttgaattacggaagtctaccagattttatagtgtatcaccaacacctaatttatattta 4032029  T
Q  103 ctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    |||| ||||||||||| | |||||||||||||||||||||||||||    
T  4032030 ctttcttcttcttcttccttcatcttcatctacattcatccttcat 4032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 18654403 - 18654551
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta--a 98  Q
    |||||||||||||||| ||||||| ||| |  |||| ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||  |    
T  18654403 ttggtccaattttgatcattttaatcccattaaaaaagagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaatttatca 18654502  T
Q  99 acccctttattcttcttctttcctcatcttcatctacattcatccttca 147  Q
    ||   ||| ||||||||||| |||||||||||||| |||||||||||||    
T  18654503 acatttttcttcttcttcttccctcatcttcatcttcattcatccttca 18654551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 12372424 - 12372566
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    ||||||||||||||||||||  ||||| ||||  | |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |    ||    
T  12372424 tccaattttgataattttaataccctaaaaaaacataccgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaattt-atttact 12372522  T
Q  105 ttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    || ||||||||||| |||||||||||||||||||||||||||||    
T  12372523 ttcttcttcttcttccctcatcttcatctacattcatccttcat 12372566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 13278239 - 13278095
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta--aaccc 102  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||   ||      
T  13278239 tccaattttgataattttaatcccatagaaaaagagaccgttggattagggaggtctatcagattttatagtgtatcaccaacacctaatttatttactt 13278140  T
Q  103 ctttattcttcttctttcctcatcttcatctacattcatccttca 147  Q
      || ||||||||||| |||||||||||||| |||||||| ||||    
T  13278139 tattcttcttcttcttccctcatcttcatctccattcatctttca 13278095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 19228944 - 19229040
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||    
T  19228944 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctattagattttatagtgtatcatcaacacctaattta 19229040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 9083308 - 9083216
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaa 93  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||    
T  9083308 ttggtccaattttgataattttaatcccctaaaaaaggagaccgttggattacgaaggtctataagattttatagtgtatcaccaacacctaa 9083216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39350657 - 39350562
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    ||||||||||||| |||||||||| || ||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  39350657 ttggtccaatttttataattttaatcctctaaaaaaagagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 39350562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 4033037 - 4032941
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||| |||||||||| || ||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||    
T  4033037 ttggtccaattttaataattttaatccactaaaaaaagagaccgttggattacggaggtctatcagattttataatgtatcattaacacctagttta 4032941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 19230085 - 19229989
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||||| || ||||||||||||||||  ||||| |||||||    
T  19230085 ttggtccaattttgataattttaatcccctcaaaaaagagaccgttggattacggaggtctatcaaattttatagtgtatcatcaacacttaattta 19229989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 6803636 - 6803497
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| ||  || ||||  |||||||| ||||||  || |||| |||||||||||||||||||| |||| ||||||| |      
T  6803636 ttggtccaattttgataattttaatcctttaaaaaaacagaccgttagattacaaag-tctatcagattttatagtgtatcaccaacatctaattt-att 6803539  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatc 142  Q
      |||| ||||||||||| |||||||||||||||||||||||    
T  6803538 tactttcttcttcttcttccctcatcttcatctacattcatc 6803497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 39349586 - 39349682
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||| ||||||| |||||||||| |||||| |||| | ||||||| |||||||||||||||  ||||||||| ||| ||||| |||||||||||||    
T  39349586 ttggttcaatttttataattttaatcccctaaaaaaagtgaccgtttgattacggaggtctattagattttatcgtggatcaccaacacctaattta 39349682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 18655664 - 18655517
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta--a 98  Q
    ||||||||| |||||||||||||| |||||| |||| |||||||||| |||||| | ||||| |||||||||  ||||||||| ||||  |||||||  |    
T  18655664 ttggtccaactttgataattttaatcccctaaaaaaagagaccgttgaattacgaaagtctatcagattttacggtgtatcaccaacaattaatttatta 18655565  T
Q  99 acccctttattcttcttctttcctcatcttcatctacattcatccttcataaat 152  Q
    |||      | |||||||||  ||||| |||||| |||||||||||||||||||    
T  18655564 acc------tccttcttcttctctcattttcatccacattcatccttcataaat 18655517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 39164162 - 39164295
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||||||||||||||| |||||| ||| || ||||  |||| |||| |||||||||| ||| || ||||||||||||||||| |||||||||||| |      
T  39164162 ttggtccaattttgata-ttttaatcccttaaaaaaa-agactgttgaattacggaggcctatcaaattttatagtgtatcaccaacacctaattt-att 39164258  T
Q  101 ccctttattcttcttctttcctcatcttcatctacatt 138  Q
      |||| |||||||| ||||||||||||||||||||||    
T  39164259 tacttttttcttctt-tttcctcatcttcatctacatt 39164295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13276925 - 13276996
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagatttta 72  Q
    |||||| ||||||||||||||||| ||| || ||||  ||||||||||||||||||||| || || ||||||    
T  13276925 ttggtcaaattttgataattttaatcccttaaaaaaaaagaccgttggattacggaggtgtatcacatttta 13276996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 12373691 - 12373633
Alignment:
Q  39 agaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||| | ||||| ||||||||| | |||||||| |||||||||||||    
T  12373691 agaccgttggattacgaatgtctatcagattttacactgtatcaccaacacctaattta 12373633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 38603765 - 38603634
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||||| |||||  ||||||||| | |||| ||||  |||||||||||| | | ||||| | ||||| | |||||||||||| ||||||| ||||| |     
T  38603765 ttggtcctattttattaattttaaactcctaaaaaagaagaccgttggataaagaaggtccatcagatctaatagtgtatcaccaacacctcatttatat 38603666  T
Q  101 ccctttattcttcttctttcctcatcttcatct 133  Q
    | |||| ||| ||||| |||||||||| |||||    
T  38603665 cactttcttcatcttc-ttcctcatctccatct 38603634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 18091689 - 18091851
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccc 103  Q
    ||||||||||||||||||||| | | || ||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||| |    |    
T  18091689 gtccaattttgataattttaatctcttaaaaaatgagaccgttgaattacagaggtctatcagattttatagtgtatcaccaacacctaattt-atttac 18091787  T
Q  104 tttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
    ||| ||||||||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  18091788 tttcttcttcttcttccctcatcttcatctaccttcattcttcatcaatattcatcaataaaac 18091851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 34095671 - 34095520
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||| |      
T  34095671 ttggtccaattttgataattttaatcccctaaaaaaggagaccgttgaattacggaggtctatcagattttatagtgtatcacccacacctaattt-att 34095573  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaata 153  Q
      |||| ||||||||||| | ||||||||||||||||||||||||||| ||||    
T  34095572 tactttcttcttcttcttccatcatcttcatctacattcatccttcatcaata 34095520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 22621973 - 22622116
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||       
T  22621973 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccgacaccgaattta--- 22622069  T
Q  101 cccttta--ttcttcttctttcctcatcttcatctacattcatccttcat 148  Q
       ||||  ||||||||||| |||||||||||||||||||||||||||||    
T  22622070 ---tttactttcttcttcttccctcatcttcatctacattcatccttcat 22622116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 17356471 - 17356613
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    |||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | || |    ||    
T  17356471 tccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacct-agttcatttact 17356569  T
Q  105 ttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    || ||||||||||| |||||||||||||| ||||||||||||||    
T  17356570 ttcttcttcttcttccctcatcttcatcttcattcatccttcat 17356613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 10802995 - 10803160
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||||||||||||||||||||||  ||||| |||| |||||||||||||||||||||| || ||||||||||| |||||||| |||||| ||||| |      
T  10802995 ttggtccaattttgataattttaataccctaaaaaaagagaccgttggattacggaggtttatcagattttatattgtatcaccaacaccgaattt-att 10803093  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
      |||| ||||||     || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  10803094 tactttcttcttccctcatcttcatcttcatctacattcatccttcatcaatattcatcaataaaac 10803160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 22623155 - 22623018
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||       
T  22623155 ttggtccaattttgataattttaatcccctacaaaaagagaccgttggattacggaggtctatcagattttataatgtatcaccaacatctaattta--- 22623059  T
Q  101 cccttta--ttcttcttctttcctcatcttcatctacattcatc 142  Q
       ||||   |||||||||| |||||||||||||||||||||||    
T  22623058 ---tttactctcttcttcttccctcatcttcatctacattcatc 22623018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 38032432 - 38032336
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||    
T  38032432 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaattta 38032336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8815369 - 8815212
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| || ||| ||||  | |||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||       
T  8815369 ttggtccaattttgataattttaatcctctaaaaaaaaaaaccgttggattacggaggtctatcagattttatagtgtatcaccaacaccaaatttattt 8815270  T
Q  101 ccct-----ttattcttcttctttcctcatcttcatctacattcatccttcataaata 153  Q
     | |     || ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  8815269 actttcttcttcttcttcttcttccctcatcttcatctacattcatccttcatcaata 8815212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7261555 - 7261459
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||||| ||||  ||||| |||||||||| |||||||  ||||||||||||||||||| |||||||||||||    
T  7261555 ttggtccaattttgataattttaatcccctaaaaaaatagaccattggattacgaaggtctataagattttatagtgtatcaccaacacctaattta 7261459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 35927124 - 35927032
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||| | |||| ||||  ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  35927124 tccaattttgataattttaatctcctaaaaaaaaagatcgttggattacgaaggtctaccagattttatagtgtatcaccaacacctaattta 35927032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38031274 - 38031370
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| ||| || ||||  ||||||||| |||||||||||||| |||||||||||||||||||  |||||||||||||    
T  38031274 ttggtccaattttgataattttaatcccataaaaaaaaagaccgttgaattacggaggtctatcagattttatagtgtatcatcaacacctaattta 38031370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 5433415 - 5433323
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||||||||||  ||||| ||| |||||| |||| |||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  5433415 tccaattttgataattttaataccctaaaaattgagactgttgtattacggaggtctatcagattttataatgtatcacaaacacctaattta 5433323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 8814241 - 8814336
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||| |||||||||||||||||  ||||| ||||| |||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  8814241 ttggtcgaattttgataattttaataccctaaaaaat-agactgttggattacggaggtctatcagattttatagtgtaacaccaacacctaattta 8814336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 23757978 - 23757886
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||| || | | |||| |||||||||| |||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  23757978 tccaattttgataattttaatcctccaaaaaaagagaccgttgaattacggaggtctatcagattttatggtgtatcaccaacacctaattta 23757886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 48499470 - 48499565
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||||||||||||||||||| |||||| |||| |||| ||||||||||| |||||||| |||||||||  ||||||||| |||| |||||||    
T  48499470 ttggtccaattttgataattttaatcccctaaaaaaagagatcgttggattacagaggtctatcagattttacggtgtatcaccaacatctaattt 48499565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 10804207 - 10804111
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||| |||||||||||||||||| || ||| ||||  |||||||||||||||||||||||| ||||||||| |||||||||  ||| |||||||||    
T  10804207 ttggttcaattttgataattttaatccactaaaaaaaaagaccgttggattacggaggtctatcagattttacagtgtatcatcaacgcctaattta 10804111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 35193208 - 35193140
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagatt 69  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||    
T  35193208 ttggtccatttttgataattttaatcccctagaaaaagagaccgttggattacggaggtctatcagatt 35193140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 17357871 - 17357794
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatca 82  Q
    |||||||||||||||||||| | |||  |||| |||||||||| |||||||||||||||||||||||||| |||||||    
T  17357871 tccaattttgataattttaatctcctgaaaaaagagaccgttgaattacggaggtctaccagattttataatgtatca 17357794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 35191929 - 35192001
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgta 79  Q
    |||||||||||||||||| |||||| |||| |||| |||||||||||||| ||||| || |||||||||||||    
T  35191929 caattttgataattttaatcccctaaaaaaagagaacgttggattacggaagtctatcaaattttatagtgta 35192001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 48501335 - 48501240
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||| |||||| ||| |||||| |||||| |||| ||||||||| ||||||||||||||  |||||||||| ||||||||  |||||||||||||    
T  48501335 ttggtctaattttaata-ttttaatcccctaaaaaaagagaccgttagattacggaggtctgtcagattttattgtgtatcatcaacacctaattta 48501240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 36074764 - 36074655
Alignment:
Q  43 cgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttctttcctcatcttcatctacattcatc 142  Q
    |||||||||||| ||||||| || ||||||||||||||||| |||||||||||| |     |||  |||||||||| ||||||||||||||| |||||||    
T  36074764 cgttggattacgaaggtctatcatattttatagtgtatcaccaacacctaattt-atttaatttcctcttcttcttccctcatcttcatctaaattcatc 36074666  T
Q  143 cttcataaata 153  Q
     ||||| ||||    
T  36074665 attcattaata 36074655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 35925804 - 35925893
Alignment:
Q  8 aattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||||||| |  ||| ||||  |||| |||||||||||||| |||| ||||||||||||||||||   |||||||||||||    
T  35925804 aattttgataattttaatcttctaaaaaaaaagactgttggattacggagatctatcagattttatagtgtatcgtcaacacctaattta 35925893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 56235030 - 56234889
Alignment:
Q  3 ggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaaccc 102  Q
    |||| |||||||||| |||||| || ||| ||||  |||||  || |||||| ||||||| ||||||||||| |||||||| |||||||||||| |        
T  56235030 ggtctaattttgatacttttaatcctctaaaaaac-agaccaatgaattacgaaggtctatcagattttataatgtatcaccaacacctaattt-attta 56234933  T
Q  103 ctttattcttcttctttcctcatcttcatctacattcatccttc 146  Q
    |||| ||||| |||||   ||||||| |||||||||||||||||    
T  56234932 ctttcttcttattcttctttcatctttatctacattcatccttc 56234889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 56233830 - 56233874
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgt 45  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||    
T  56233830 ttggtccaattttgataattttaatcccctaaaaaaagagaccgt 56233874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 48081536 - 48081483
Alignment:
Q  44 gttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||| |||||||||  |||| |||||| |||||||| |||||||||||||    
T  48081536 gttggattgcggaggtctttcagagtttataatgtatcaccaacacctaattta 48081483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 54372847 - 54372943
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||| |||||  | |||||||||||| |||||| ||||||||||||| |  ||||||||  |||| | |  ||||||||| ||||||| |||||    
T  54372847 ttggtcctattttattcattttaacccccaagaaaaggagaccgttggataaatgaggtctattagatctaactgtgtatcaccaacacctgattta 54372943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 52759472 - 52759634
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccc 103  Q
    ||||||||||||||||||||| | | || ||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||| |    |    
T  52759472 gtccaattttgataattttaatctcttaaaaaatgagaccgttgaattacagaggtctatcagattttatagtgtatcaccaacacctaattt-atttac 52759570  T
Q  104 tttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
    ||| ||||||||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||    
T  52759571 tttcttcttcttcttccctcatcttcatctaccttcattcttcatcaatattcatcaataaaac 52759634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 17244281 - 17244446
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||  | ||||||||| |      
T  17244281 ttggtccaattttgataattttaatctcctaaaaaaagagaccgttggattacggaggtctatcagattttataatgtatcaccgatacctaattt-att 17244379  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
      |||| ||||||||||| |||||||||||||||||||||||||||||  || ||||||||||||||    
T  17244380 tactttcttcttcttcttccctcatcttcatctacattcatccttcatcgatgttcatcaataaaac 17244446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 7111487 - 7111336
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||| |      
T  7111487 ttggtccaattttgataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcatcaacacctaattt-att 7111389  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaata 153  Q
      |||| ||||||||||| | |||||||||||| |||||||||||||| ||||    
T  7111388 tactttcttcttcttcttccatcatcttcatctccattcatccttcatcaata 7111336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 45228381 - 45228526
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||||||||||| |||||||||| |||||| |||| |||||||||||||||||||| |||| || ||||||||||||||||| ||| | |||||| |      
T  45228381 ttggtccaattttaataattttaatcccctaaaaaaagagaccgttggattacggagatctatcaaattttatagtgtatcacaaacgcttaattt-att 45228479  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttca 147  Q
      |||| ||||||||||| ||||||||||||||||||||||||||||    
T  45228480 tactttcttcttcttcttccctcatcttcatctacattcatccttca 45228526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 5488879 - 5488783
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  5488879 ttggtccaattttgataattttaatcccttagaaaaagagaccgttggattacggaggtctatcaaattttatagtgtatcaccaacacctaattta 5488783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 52761608 - 52761466
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    |||||||||||||||||||||||| |||||  |||| |||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||       
T  52761608 ttggtccaattttgataattttaatcccctgaaaaaagagaccgttggattgcggaggtctatcagattttatagtgtatcaccaacacctaattta--- 52761512  T
Q  101 cccttta--ttcttcttctttcctcatcttcatctacattcatccttca 147  Q
       ||||  |||| |||||| | |||||||||||| |||||||||||||    
T  52761511 ---tttactttctccttcttccatcatcttcatcttcattcatccttca 52761466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 5488611 - 5488702
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  5488611 tccaattttgataattttaatcccttagaaaaagagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacgtaattt 5488702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 51468913 - 51468749
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||||||||||| |||||||||| |||||| ||||  | | | ||||||||||||| ||||  |||||||| |||||||||| |||||||||||| |      
T  51468913 ttggtccaattttaataattttaatcccctaaaaaaaaaaagcattggattacggagatctattagattttacagtgtatcaccaacacctaattt-att 51468815  T
Q  101 ccctttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaa 166  Q
      |||| ||||||||||| | ||||||||||||||||| ||||||||| ||| |||||||||||||    
T  51468814 tactttcttcttcttcttccatcatcttcatctacatttatccttcatcaatgttcatcaataaaa 51468749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 21203124 - 21203263
Alignment:
Q  8 aattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaaccccttta 107  Q
    |||||| |||||| ||| |||||| |||| ||||||||||||||||  ||||||| |||||||||||||||||||  |||||||||||| |    ||||     
T  21203124 aattttcataattctaatcccctaaaaaaagagaccgttggattacaaaggtctatcagattttatagtgtatcatcaacacctaattt-atttactttc 21203222  T
Q  108 ttcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    || ||||||||| ||||||||||||||||||||||||||||    
T  21203223 ttattcttcttttctcatcttcatctacattcatccttcat 21203263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 40187708 - 40187800
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaa 93  Q
    ||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||    
T  40187708 ttggtccaatttttataattttaatcccctaaaaaaagagaccgttggattacggaggtctatcagattttatcgtgtatcaccaacacctaa 40187800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 51693253 - 51693349
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||| ||||||||||||||||||  ||||| |||| ||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||    
T  51693253 ttggttcaattttgataattttaataccctaaaaaaagagaccgttggattacggaggtctatcggattttatagtgtatcaccaacacctaattta 51693349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 51468445 - 51468581
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaac 100  Q
    ||||||||||||| |||||||||| |||||| ||||  |||  | ||||||||||||||||| |||||||||||||||||||| |||||| ||||| |      
T  51468445 ttggtccaattttaataattttaatcccctaaaaaaaaagattgatggattacggaggtctatcagattttatagtgtatcaccaacacccaattt-att 51468543  T
Q  101 ccctttattcttcttctttcctcatcttcatctacatt 138  Q
      |||| ||||||||||| |||||||||||||||||||    
T  51468544 tacttttttcttcttcttccctcatcttcatctacatt 51468581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 7110332 - 7110428
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||||| |||| |||| ||||||||| |||||||||| |||||||||||||||||||  ||| |||||||||    
T  7110332 ttggtccaattttgataattttaatcccctaaaaaaagagatcgttggattgcggaggtctatcagattttatagtgtatcatcaacgcctaattta 7110428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 50485008 - 50484913
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||||||||||||||||||| |||||| |||| |||||| |||||||||  ||||||| ||||||||| |||||||||| ||||||||||||    
T  50485008 ttggtccaattttgataattttaatcccctaaaaaaagagaccattggattacataggtctatcagattttacagtgtatcaccaacacctaattt 50484913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 18819368 - 18819460
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaa 93  Q
    |||| |||||||| |||||||||| ||||||  ||| || ||||||||||||||||||| || |||||||||||||||||||| |||||||||    
T  18819368 ttggcccaattttaataattttaatcccctatgaaaagaaaccgttggattacggaggtatatcagattttatagtgtatcaccaacacctaa 18819460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 45229611 - 45229472
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    |||||||||||||||||||| ||  || ||||  |||  ||||||||||||||||||| ||||||||||| || ||||| |||||||||||||      |    
T  45229611 tccaattttgataattttaatcctataaaaaaaaagattgttggattacggaggtctatcagattttataatggatcaccaacacctaattta------t 45229518  T
Q  105 tta--ttcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    |||  ||||| ||||| | |||||||||||||||||||||||||||    
T  45229517 ttagtttcttgttcttccttcatcttcatctacattcatccttcat 45229472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 1822022 - 1822111
Alignment:
Q  8 aattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||||||| ||  || |||| ||||||||||| ||||| ||||||| | ||||||||||||||||| ||||||||||||||    
T  1822022 aattttgataattttaatcctttaaaaaaagagaccgttgggttacgaaggtctatctgattttatagtgtatcattaacacctaattta 1822111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 38235122 - 38235017
Alignment:
Q  41 accgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttctttcctcatcttcatctacattca 140  Q
    |||||||||||||| | |||||  |||||||| |||||||||| |||||||||||||    | ||| ||||||||||| ||||||||||||||||| |||    
T  38235122 accgttggattacgaatgtctataagattttacagtgtatcaccaacacctaatttatttac-tttcttcttcttcttccctcatcttcatctacactca 38235024  T
Q  141 tccttca 147  Q
    |||||||    
T  38235023 tccttca 38235017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 52087780 - 52087690
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||  |||||| |||| |||||||||| |||||||||||||| || ||||||  ||||||||| |||| ||||||||    
T  52087780 caattttgataattttagtcccctaaaaaaagagaccgttgaattacggaggtctatcaaattttacggtgtatcaccaacatctaattta 52087690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 1823304 - 1823215
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaat 94  Q
    |||||||||||||||||||| |  ||| |||   | |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  1823304 tccaattttgataattttaatcttctaaaaagataaaccgttggattacgaaggtctatcagattttatagtgtatcaccaacacctaat 1823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 50483616 - 50483712
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaat-gagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    ||||||||||||| |||||||||  |||||| ||||  ||||| ||||||||||||| |||||| ||||||||| |||||| || |||||||||||||    
T  50483616 ttggtccaatttttataattttactcccctaaaaaaaagagactgttggattacggaagtctac-agattttatcgtgtataaccaacacctaattta 50483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 52086736 - 52086826
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||||| |||||||||| |||||| ||||  | |||||||||||||| |||||||  | ||||||||||||||||| | ||||||||||    
T  52086736 gtccaattttaataattttaatcccctaaaaaa--aaaccgttggattacgaaggtctataaaattttatagtgtatcaccatcacctaattt 52086826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 49784998 - 49784931
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagatttta 72  Q
    ||||||||| |||||||||| |||||| |||| ||||| ||||||||||||| ||||||| |||||||    
T  49784998 tccaattttaataattttaatcccctaaaaaaagagactgttggattacggaagtctaccggatttta 49784931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 47533860 - 47533770
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||| ||| || | | ||||  ||||||||  ||||  ||| |||| |||||||||||||||||||| |||||||||||||    
T  47533860 caattttgataattataatcctccaaaaaaatagaccgttaaattagagagatctatcagattttatagtgtatcaccaacacctaattta 47533770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17245677 - 17245621
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggag 57  Q
    |||||||||||||||| ||||||| || ||| ||||  |||||||||||||||||||    
T  17245677 ttggtccaattttgatcattttaatcctctaaaaaaaaagaccgttggattacggag 17245621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 18820755 - 18820623
Alignment:
Q  33 aaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccctt-----tattcttcttctttcctcatct 127  Q
    |||| |||| |||||||| |  ||||||||| |||||| |||||||||||||||||||| ||| |    | ||     | ||||||||||| ||||||||    
T  18820755 aaaaagagatcgttggataagtgaggtctactagatttgatagtgtatcactaacacctgattcatttactttcttcctcttcttcttcttccctcatct 18820656  T
Q  128 tcatctacattcatccttcataaatattcatca 160  Q
    |||||| |||||| ||||||| ||| |||||||    
T  18820655 tcatcttcattcaaccttcatcaatcttcatca 18820623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 104405 - 104522
Alignment:
Q  49 attacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    |||||||||||||| |||||||||||||||||||| |||| ||||||||    | ||| ||||||||||| |||||||||||||||||||||||||||||    
T  104405 attacggaggtctatcagattttatagtgtatcaccaacatctaatttatttac-tttcttcttcttcttccctcatcttcatctacattcatccttcat 104503  T
Q  149 aaatattcatcaataaaac 167  Q
     ||||||||||||||||||    
T  104504 caatattcatcaataaaac 104522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 9268 - 9359
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  9268 tccaattttgatgattttaatcccctaaaaaa-gagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattta 9359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 31139 - 31234
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||| |||| |||||||||| |||||| ||||  |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  31139 ttggtccagtttttataattttaatcccctaaaaaaacagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 31234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 35297 - 35202
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    ||||||||||||| |||||||||| |||||| ||||  |||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  35297 ttggtccaatttttataattttaatcccctaaaaaaacagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 35202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 79515 - 79610
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    ||||||||||||| |||||||||| |||||| ||||  |||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  79515 ttggtccaatttttataattttaatcccctaaaaaaacagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaattt 79610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 83673 - 83578
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||| |||| |||||||||| |||||| ||||  |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  83673 ttggtccagtttttataattttaatcccctaaaaaaacagaccgttggattacggaggtctatcagattttatagtgtatcaccaacacctaattt 83578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 3039 - 2890
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatg-agaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta-a 98  Q
    |||||||||||||||||||||||| ||   | ||||   |||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||      
T  3039 ttggtccaattttgataattttaatccaaaaaaaaaaacagaccgttagattacgaaggtctatcagattttatagtgtatcaccaacacctaatttatt 2940  T
Q  99 acccctttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
      |  ||| ||||||||||| |||||||||||||||||||||||||||||    
T  2939 tacttttttttcttcttcttccctcatcttcatctacattcatccttcat 2890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 1912 - 2019
Alignment:
Q  39 agaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttctttcctcatcttcatctacatt 138  Q
    |||||||| ||||||| | |||||  |||||||  |||||||||| |||||||||||||    | ||| ||||||||||| |||||||||||||||||||    
T  1912 agaccgttagattacgaatgtctattagattttccagtgtatcaccaacacctaatttatttac-tttcttcttcttcttccctcatcttcatctacatt 2010  T
Q  139 catccttca 147  Q
    |||||||||    
T  2011 catccttca 2019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 27892344 - 27892202
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    |||||||||||||||||||| |    | ||||  |||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||| |    ||    
T  27892344 tccaattttgataattttaatcaaaaaaaaaaacagaccgttagattacgaaggtctatcagattttatagtgtatcaccaacacctaattt-atttact 27892246  T
Q  105 ttattcttcttctttcctcatcttcatctacattcatccttcat 148  Q
    || || |||||||| |||||||||||||||||||||||||||||    
T  27892245 ttttttttcttcttccctcatcttcatctacattcatccttcat 27892202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 23833076 - 23833165
Alignment:
Q  4 gtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaa 93  Q
    ||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||||  ||||||||||||||||||  |||||||||    
T  23833076 gtccaattttgataattttaatcccctaaaaaagaagaccgttggattacggaggtctagaagattttatagtgtatcatcaacacctaa 23833165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 16602831 - 16602927
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |||  | ||||  |||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||    
T  16602831 ttggtccaattttgataattttaatccctaaaaaaaaaagaccgttggattacggatgtctatcagattttacagtgtatcaccaacacctaattta 16602927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 26388416 - 26388474
Alignment:
Q  108 ttcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaa 166  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||    
T  26388416 ttcttcttcttccctcatcttcatctacattcatccttcatcaatattcatcaacaaaa 26388474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 27891250 - 27891357
Alignment:
Q  39 agaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttctttcctcatcttcatctacatt 138  Q
    |||||||| ||||||| | ||||| ||||||||  |||||||||| |||||||||||||    | ||| ||||||||||| |||| ||||||||||||||    
T  27891250 agaccgttagattacgaatgtctatcagattttccagtgtatcaccaacacctaatttatttac-tttcttcttcttcttccctcgtcttcatctacatt 27891348  T
Q  139 catccttca 147  Q
    |||||||||    
T  27891349 catccttca 27891357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 44800983 - 44801073
Alignment:
Q  6 ccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||||||||||| || |||||| ||||  ||||||||||||||  ||||| |||||||||| | |||||||||| ||||||| ||||    
T  44800983 ccaattttgataatttcaatcccctaaaaaacaagaccgttggattatagaggtttaccagatttcacagtgtatcaccaacacctgattt 44801073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 26388330 - 26388395
Alignment:
Q  7 caattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagatttta 72  Q
    |||||||||||||||||| ||| || ||||  |||||||| ||||||||||||||| |||||||||    
T  26388330 caattttgataattttaatcccatataaaaaaagaccgtttgattacggaggtctatcagatttta 26388395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 38243967 - 38243871
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| | |||| |||| || || ||||||||||  |||| ||  |||||||| ||||||| || |||||| ||||||    
T  38243967 ttggtccaattttgataattttaatctcctaaaaaaagatactgttggattacaaaggtgtataagattttacagtgtattaccaacaccaaattta 38243871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 16604167 - 16604065
Alignment:
Q  55 gaggtctaccagattttatagtgtatcactaacacctaatttaaacccctttattcttcttctttcctcatcttcatctacattcatccttcataaatat 154  Q
    ||||||||||||||||||||||||| ||| |||||   |||||    | ||| ||||||||||| |||||||||||||| |||||| ||||||| ||| |    
T  16604167 gaggtctaccagattttatagtgtaccaccaacactggatttatttac-tttcttcttcttcttccctcatcttcatcttcattcaaccttcatcaatct 16604069  T
Q  155 tcat 158  Q
    ||||    
T  16604068 tcat 16604065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 38242993 - 38243146
Alignment:
Q  5 tccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaatttaaacccct 104  Q
    |||||||||||||||||||| | |||| |||| ||||||||||||||||  ||   ||  |||||||||| |||||||| |||||| ||||| |    ||    
T  38242993 tccaattttgataattttaatctcctaaaaaaagagaccgttggattacaaag---tataagattttataatgtatcaccaacaccaaattt-atttact 38243088  T
Q  105 ttattcttcttctttcctcatcttcatctacattcatccttcataaatattcatcaataaaac 167  Q
    || ||||  ||||| ||||||||   ||||| || ||||||||| ||||||||||||||||||    
T  38243089 ttcttct--ttcttccctcatct---tctacgtttatccttcatcaatattcatcaataaaac 38243146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 240 - 335
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||| |||||||||||||||||  || || |||| |||||||||||||||| |||||||| ||||||||| || ||||||| ||||||||||||    
T  240 ttggtcaaattttgataattttaattccttaaaaaaagagaccgttggattacagaggtctatcagattttacagcgtatcaccaacacctaattt 335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 1613 - 1518
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgagaccgttggattacggaggtctaccagattttatagtgtatcactaacacctaattt 96  Q
    |||||||||||||||||||||||| ||| || ||||  ||||||||||||||  |||||||| |||||||||  |||||| || ||||||||||||    
T  1613 ttggtccaattttgataattttaatcccttaaaaaaacagaccgttggattatagaggtctatcagattttacggtgtataaccaacacctaattt 1518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 25357 - 25260
Alignment:
Q  1 ttggtccaattttgataattttaaccccctagaaaatgag-accgttggattacggaggtctaccagattttatagtgtatcactaacacctaattta 97  Q
    |||||||||||||||||||||||| |   || || | ||| || |||||||||||||||| || || |||||||||||||| |  |||||||||||||    
T  25357 ttggtccaattttgataattttaatcatttaaaacaagaggacagttggattacggaggtttatcacattttatagtgtattatcaacacctaattta 25260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University