View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_high_13 (Length: 224)
Name: NF9240_high_13
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 3198858 - 3198649
Alignment:
| Q |
1 |
tgagagcatccaagccttgctcaaggatgctgacacaaaggctgctgaagaaggaggagaagccaataaagaagtaaaagcttggaccaaacagctcaga |
100 |
Q |
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||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |
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| T |
3198858 |
tgagagcatccaaaccttgctcaaggatgcagacaaaaaggctgctgaagaaggagaacgagccaataaagaagtaaaagcttggaccaaacagctgaga |
3198759 |
T |
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| Q |
101 |
gaagaatcttttcgcatagaagatgtgattgattactataacataaatgtggtacaaagagtcaaccattctggactcatagccttactccaaaacattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||| |
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| T |
3198758 |
gaagaatcttttcgcatagaagatgtgattgattactataacatgaatgtggcacaaagggtcaaccattctggactcatagctttactccaaaatattt |
3198659 |
T |
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| Q |
201 |
ttcacatgat |
210 |
Q |
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|||||||||| |
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| T |
3198658 |
ttcacatgat |
3198649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 3200563 - 3200679
Alignment:
| Q |
20 |
ctcaaggatgctgacacaaaggctgctgaagaaggaggagaag---ccaataaagaagtaaaagcttggaccaaacagctcagagaagaatcttttcgca |
116 |
Q |
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||||||||||| ||||||||||||||||| |||||||||| || |||| ||| | | ||| ||||| || ||||| ||||||| ||||||||||| |
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| T |
3200563 |
ctcaaggatgcagacacaaaggctgctgatgaaggaggaggaggagccaacgaaggaatcaaaacttgggtgaagcagctaagagaagcatcttttcgca |
3200662 |
T |
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| Q |
117 |
tagaagatgtgattgat |
133 |
Q |
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| T |
3200663 |
tagaagatgtgattgat |
3200679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3311162 - 3311116
Alignment:
| Q |
1 |
tgagagcatccaagccttgctcaaggatgctgacacaaaggctgctg |
47 |
Q |
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| T |
3311162 |
tgagagcatccaagccttcctcaaggatgctgacacaaaggccgctg |
3311116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3322761 - 3322715
Alignment:
| Q |
1 |
tgagagcatccaagccttgctcaaggatgctgacacaaaggctgctg |
47 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
3322761 |
tgagagcatccaagccttcctcaaggatgctgacacaaaggccgctg |
3322715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 3357885 - 3357769
Alignment:
| Q |
20 |
ctcaaggatgctgacacaaaggctgctgaagaaggaggagaag---ccaataaagaagtaaaagcttggaccaaacagctcagagaagaatcttttcgca |
116 |
Q |
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||||||||||| ||||||| ||||||||| |||||||||| || |||| ||| | | ||| ||||| || ||||| ||||||| ||||||||||| |
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| T |
3357885 |
ctcaaggatgcagacacaagggctgctgatgaaggaggaggaggagccaacgaaggaatcaaaacttgggtgaagcagctaagagaagcatcttttcgca |
3357786 |
T |
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| Q |
117 |
tagaagatgtgattgat |
133 |
Q |
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||||||||||||||||| |
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| T |
3357785 |
tagaagatgtgattgat |
3357769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 3221912 - 3221845
Alignment:
| Q |
92 |
cagctcagagaagaatcttttcgcatagaagatgtgattgattactataacataaatgtggtacaaag |
159 |
Q |
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||||| ||||||| |||||||| |||||||||||||||||||| |||| ||| || |||||||||| |
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| T |
3221912 |
cagctaagagaagcatcttttcacatagaagatgtgattgattgttatagcatgtatttggtacaaag |
3221845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3304483 - 3304440
Alignment:
| Q |
1 |
tgagagcatccaagccttgctcaaggatgctgacacaaaggctg |
44 |
Q |
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||||||||||||| |||| |||||||||||||||| |||||||| |
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| T |
3304483 |
tgagagcatccaatccttcctcaaggatgctgacagaaaggctg |
3304440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 3280694 - 3280652
Alignment:
| Q |
92 |
cagctcagagaagaatcttttcgcatagaagatgtgattgatt |
134 |
Q |
| |
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||||| ||||||| ||||||||| ||||||||||||||||||| |
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| T |
3280694 |
cagctaagagaagcatcttttcgtatagaagatgtgattgatt |
3280652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 49386875 - 49386834
Alignment:
| Q |
93 |
agctcagagaagaatcttttcgcatagaagatgtgattgatt |
134 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
49386875 |
agcttagagaagcatcttttcgcatagaagatgtgattgatt |
49386834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 41947651 - 41947592
Alignment:
| Q |
100 |
agaagaatcttttcgcatagaagatgtgattgattactataacataaatgtggtacaaag |
159 |
Q |
| |
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||||| ||||||||||||| ||| ||||||||||| ||||||||| || |||||||||| |
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| T |
41947651 |
agaagcatcttttcgcataaaagttgtgattgattgctataacatgtatttggtacaaag |
41947592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41947753 - 41947698
Alignment:
| Q |
1 |
tgagagcatccaagccttgctcaaggatgctgacacaaaggctgctgaagaaggag |
56 |
Q |
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|||||||||| ||||||| ||||||||||| ||||||| ||||| ||| ||||||| |
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| T |
41947753 |
tgagagcatcaaagcctttctcaaggatgcagacacaagggctgttgatgaaggag |
41947698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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