View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_high_3 (Length: 486)
Name: NF9240_high_3
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 46310792 - 46310403
Alignment:
| Q |
18 |
cagacgacacatactcaagttagtaaaccaaataatccaaatacaaagtcagaccaagaaccaatttttctcgatgagattattcaaataagcatctaaa |
117 |
Q |
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| T |
46310792 |
cagacgacacatactcaagttagtaaaccaaataatccaaatacaaagtcagaccaagaaccaatttttctcgatgagattattcaaataagcatctaaa |
46310693 |
T |
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| Q |
118 |
ttggttactttttaagtatggataaatttttatatgaatatgcatgctcttgcagaaaagtaaatttgaataccaacatttactcttttgcttcaacatg |
217 |
Q |
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| T |
46310692 |
ttggttactttttaagtatggataaatttttatatgaatatgcatgctcttgcagaaaagtaaatttgaataccaacatttactcttttgcttcaacatg |
46310593 |
T |
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| Q |
218 |
cagaaaaccacaagaaaacaagcttttggatgcttctccgttgtaacaggcagcagtatcattgaagggctgttgaagaaaaagtactactactacccta |
317 |
Q |
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| T |
46310592 |
cagaaaaccacaagaaaacaagcttttggatgcttctccgttgtaacaggcagcagtatcattgaagggctgttgaagaaaaagtactactactacccta |
46310493 |
T |
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| Q |
318 |
ggctgaaactagtctaaagataaccaccgatgcggctgtagagtaaccattaaaggatttcatttgttgagattgcagaatggtgattgt |
407 |
Q |
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| T |
46310492 |
ggctgaaactagtctaaagataaccacggatgcggctgtagagtaaccattaaaggatttcctttgttgagattgcagaatgttgattgt |
46310403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 370 - 486
Target Start/End: Complemental strand, 46309701 - 46309587
Alignment:
| Q |
370 |
aaggatttcatttgttgagattgcagaatggtgattgtgttgaaatttacttcgtgtgttgctaatatatattttcttccaagttcatagcactacccca |
469 |
Q |
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| T |
46309701 |
aaggatttcatttgttgagattgcagaatggtgattgtgttgaaatttacttcgtgt--tgctaatatatattttcttccaagttcatagcactacccca |
46309604 |
T |
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| Q |
470 |
ctagtggagatgctttt |
486 |
Q |
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| T |
46309603 |
ctagtggagatgctttt |
46309587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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