View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9240_high_8 (Length: 315)

Name: NF9240_high_8
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9240_high_8
NF9240_high_8
[»] chr5 (4 HSPs)
chr5 (32-202)||(8871119-8871289)
chr5 (153-270)||(6665622-6665739)
chr5 (153-297)||(36606086-36606220)
chr5 (161-238)||(32658824-32658901)
[»] chr2 (7 HSPs)
chr2 (153-297)||(14314417-14314561)
chr2 (153-297)||(14811175-14811319)
chr2 (159-218)||(27709937-27709996)
chr2 (152-218)||(32751109-32751175)
chr2 (233-271)||(14314372-14314410)
chr2 (153-182)||(8905615-8905644)
chr2 (223-271)||(14811326-14811374)
[»] chr8 (12 HSPs)
chr8 (156-297)||(17068098-17068239)
chr8 (156-297)||(17580118-17580259)
chr8 (153-297)||(29054462-29054605)
chr8 (152-297)||(20289269-20289404)
chr8 (152-297)||(21075899-21076034)
chr8 (152-297)||(10861818-10861953)
chr8 (153-243)||(10786846-10786936)
chr8 (153-297)||(17631186-17631317)
chr8 (218-297)||(34964768-34964847)
chr8 (221-271)||(3046836-3046886)
chr8 (156-257)||(17048177-17048279)
chr8 (231-271)||(10861763-10861803)
[»] scaffold0017 (1 HSPs)
scaffold0017 (156-297)||(38084-38225)
[»] chr7 (18 HSPs)
chr7 (153-297)||(30947456-30947600)
chr7 (153-297)||(26279838-26279982)
chr7 (153-297)||(37245309-37245443)
chr7 (153-297)||(40819935-40820069)
chr7 (152-246)||(19928326-19928420)
chr7 (152-218)||(25443518-25443584)
chr7 (153-269)||(22205363-22205469)
chr7 (153-269)||(22229270-22229376)
chr7 (231-271)||(25443577-25443617)
chr7 (221-271)||(36630390-36630440)
chr7 (150-218)||(36281517-36281585)
chr7 (229-271)||(25443657-25443699)
chr7 (221-271)||(36630249-36630299)
chr7 (223-271)||(15043307-15043355)
chr7 (223-271)||(26279783-26279831)
chr7 (223-271)||(30947607-30947655)
chr7 (223-271)||(37245254-37245302)
chr7 (223-271)||(40819880-40819928)
[»] chr6 (4 HSPs)
chr6 (153-297)||(21111999-21112143)
chr6 (150-297)||(11382411-11382558)
chr6 (153-297)||(8861950-8862084)
chr6 (223-271)||(11382565-11382613)
[»] chr3 (17 HSPs)
chr3 (153-296)||(4533371-4533514)
chr3 (153-297)||(39579803-39579937)
chr3 (153-271)||(42864250-42864368)
chr3 (152-297)||(39674087-39674222)
chr3 (152-243)||(53363109-53363200)
chr3 (152-297)||(53330726-53330861)
chr3 (152-297)||(53334410-53334545)
chr3 (152-297)||(53338087-53338222)
chr3 (156-217)||(27391352-27391413)
chr3 (231-297)||(958813-958879)
chr3 (153-297)||(25041248-25041381)
chr3 (166-218)||(24645647-24645699)
chr3 (160-216)||(41530477-41530533)
chr3 (154-205)||(30551661-30551712)
chr3 (160-216)||(29359666-29359722)
chr3 (223-271)||(39579944-39579992)
chr3 (223-271)||(39674229-39674277)
[»] chr1 (4 HSPs)
chr1 (156-297)||(46398127-46398268)
chr1 (156-218)||(29096170-29096232)
chr1 (156-221)||(41430384-41430449)
chr1 (223-271)||(46398072-46398120)
[»] chr4 (6 HSPs)
chr4 (152-229)||(563339-563416)
chr4 (153-197)||(54260056-54260100)
chr4 (235-271)||(54260117-54260153)
chr4 (163-218)||(32760428-32760483)
chr4 (230-297)||(26261054-26261121)
chr4 (156-184)||(26261000-26261028)
[»] scaffold0274 (1 HSPs)
scaffold0274 (156-226)||(14429-14499)
[»] scaffold0037 (1 HSPs)
scaffold0037 (156-257)||(4398-4500)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 8871119 - 8871289
Alignment:
Q  32 ctaagttgaattttgatcatgaaagtgtgtttgttattcataaattgtactttgcaagttacaactactagtcaaggtcaaggatagtacttggtagtca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8871119 ctaagttgaattttgatcatgaaagtgtgtttgttattcataaattgtactttgcaagttacaactactagtcaaggtcatggatagtacttggtagtca 8871218  T
Q  132 catgcctcctctcctcacatcctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgt 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||    
T  8871219 catgcctcctctcctcacatcctctcaagccccgatactccaaaaattgtgaagtatcatatctgatacgt 8871289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 6665622 - 6665739
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||||||||||||||||||| |||||||||||| ||||| || ||||||||| |||||||||||||||| |||| ||||| ||||| |||||||| ||||    
T  6665622 ctctgaagccccgatactccgaaaatggtgaaggatcgtgtccgacacgtattcgataccgatacgccccgatacgtcccaatacgcgtatcggagaagt 6665721  T
Q  253 atcgggcaattaatattt 270  Q
    |||| |||||||||||||    
T  6665722 atcgagcaattaatattt 6665739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 36606086 - 36606220
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||| ||||||| ||| |||||||||||||||||||||||||  |||||||||||||| ||||||          ||||||||||||||||||||||| |    
T  36606086 ctctcaagccccaatattccaaaaatggtgaagtatcgtatcctacacgtatccgatatcgatac----------gtcccgatacgggtatcggaaaaat 36606175  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    ||| || ||||||||||||       |||||||||||||||||||    
T  36606176 atcaggaaattaatatttatttttttgaaaaacaatgaccgatac 36606220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 32658824 - 32658901
Alignment:
Q  161 ccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacg 238  Q
    ||||||||||||||||||  ||||| ||||| || ||||| |||| ||||| ||||||| |||||| ||| |||||||    
T  32658824 ccccgatactccaaaaataatgaagaatcgtgtccgacacatatctgatactgatacgctctgatacgtctcgatacg 32658901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 153 - 297
Target Start/End: Complemental strand, 14314561 - 14314417
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  14314561 ctctaaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgccccgatacgtcccgatacgcgtatcggaaaagt 14314462  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||||||||||||       |||||||||||||||||||    
T  14314461 atcgggcaattaatatttatttttttgaaaaacaatgaccgatac 14314417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 14811175 - 14811319
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  14811175 ctctgaagccccgacacttcaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgccccgatacgtcccgatacgcgtatcggaaaagt 14811274  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||||||||||||       |||||||||||||||||||    
T  14811275 atcgggcaattaatatttatttttttgaaaaacaatgaccgatac 14811319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 27709996 - 27709937
Alignment:
Q  159 agccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacg 218  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  27709996 agccccgatactccaaaaatggtgaagaatcgtgtctgacacgtatccgataccgatacg 27709937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 32751175 - 32751109
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacg 218  Q
    |||||||||| ||||||||||||||||||||||| ||  |||| |||||||||||||||||||||||    
T  32751175 cctctgaagctccgatactccaaaaatggtgaagaattatatccgacacgtatccgataccgatacg 32751109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 14314410 - 14314372
Alignment:
Q  233 gatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||||| |||||||| |||||||||||||||||||||||    
T  14314410 gatacgcgtatcggagaagtatcgggcaattaatattta 14314372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 8905615 - 8905644
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtg 182  Q
    ||||||||||||||||||||||||||||||    
T  8905615 ctctgaagccccgatactccaaaaatggtg 8905644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 14811326 - 14811374
Alignment:
Q  223 gatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||| ||||||||||| |||||||| || |||||| |||||||||||||    
T  14811326 gatacgtcccgatacgtgtatcggagaaatatcggacaattaatattta 14811374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 156 - 297
Target Start/End: Original strand, 17068098 - 17068239
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagtatc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||| |||||||||| |||||||||||||||||    
T  17068098 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccaatacgcctcgatacgtcccgatacaggtatcggaaaagtatc 17068197  T
Q  256 gggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    ||||||||||||||||       |||||||||||||||||||    
T  17068198 gggcaattaatatttatttttttgaaaaacaatgaccgatac 17068239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 156 - 297
Target Start/End: Complemental strand, 17580259 - 17580118
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagtatc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||| |||||||||| |||||||||||||||||    
T  17580259 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccaatacgcctcgatacgtcccgatacaggtatcggaaaagtatc 17580160  T
Q  256 gggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    ||||||||||||||||       |||||||||||||||||||    
T  17580159 gggcaattaatatttatttttttgaaaaacaatgaccgatac 17580118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 29054462 - 29054605
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||  |||| |||||||||||||||||||||||||    
T  29054462 ctctcaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgata-cgatacgcctcgatacgtcccgatacgggtatcggaaaagt 29054560  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||||||||||||       ||||||||||||| |||||    
T  29054561 atcgggcaattaatatttatttttttgaaaaacaatgactgatac 29054605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 152 - 297
Target Start/End: Original strand, 20289269 - 20289404
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||          |||||||||||| |||||||||||    
T  20289269 cctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatcggataccgatac----------gtcccgatacggctatcggaaaag 20289358  T
Q  252 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    ||||||||||||||||||||       |||||||||||||||||||    
T  20289359 tatcgggcaattaatatttatttttttgaaaaacaatgaccgatac 20289404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 152 - 297
Target Start/End: Original strand, 21075899 - 21076034
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||          |||||||||||| |||||||||||    
T  21075899 cctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatcggataccgatac----------gtcccgatacggctatcggaaaag 21075988  T
Q  252 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    ||||||||||||||||||||       |||||||||||||||||||    
T  21075989 tatcgggcaattaatatttatttttttgaaaaacaatgaccgatac 21076034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 152 - 297
Target Start/End: Complemental strand, 10861953 - 10861818
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||           | |||||||||||||||||||||    
T  10861953 cctctgaagccccgatactccaaaaatggtgaagtatcgtaaccgacacatatccgataccgatac----------attccgatacgggtatcggaaaag 10861864  T
Q  252 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    ||| ||||||||||||||||       |||||||||||||||||||    
T  10861863 tattgggcaattaatatttatttttttgaaaaacaatgaccgatac 10861818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 10786936 - 10786846
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtat 243  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  ||| |||||||||| |||||    
T  10786936 ctctcaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgagacgccccaatacgtcccgatacaggtat 10786846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 297
Target Start/End: Complemental strand, 17631317 - 17631186
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    ||||||||||||||| || |||||||||||   |||| |||| |||||||||||||||||||||||          ||||||||||||||||||||||||    
T  17631317 ctctgaagccccgatgctacaaaaatggtg---tatcttatccgacacgtatccgataccgatacg----------tcccgatacgggtatcggaaaagt 17631231  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    ||| |||||||||||||||       |||||||||||||||||||    
T  17631230 atcaggcaattaatatttatttttttgaaaaacaatgaccgatac 17631186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 34964847 - 34964768
Alignment:
Q  218 gccctgatatgtcccgatacgggtatcggaaaagtatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  34964847 gccccgatacgttccgatacgggtatcggaaaagtatcgggcaattaatatttatttttttgaaaaacaatgaccgatac 34964768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 3046886 - 3046836
Alignment:
Q  221 ctgatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||||| ||||||||||| |||||||| |||||| ||||||||||||||||    
T  3046886 ctgatacgtcccgatacgtgtatcggagaagtattgggcaattaatattta 3046836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 17048177 - 17048279
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgc-cctgatatgtcccgatacgggtatcggaaaagtat 254  Q
    ||||||| |||||||| ||||||||||||||||||| || || | | | ||||||||||||| |  | ||||  | |||||||  |||||||||||||||    
T  17048177 tgaagcctcgatactctaaaaatggtgaagtatcgtgtccgataagcacccgataccgatactcttccgatacattccgatactcgtatcggaaaagtat 17048276  T
Q  255 cgg 257  Q
    |||    
T  17048277 cgg 17048279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 10861803 - 10861763
Alignment:
Q  231 ccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||||||| |||||||| ||||||||| |||||||||||||    
T  10861803 ccgatacgcgtatcggagaagtatcggacaattaatattta 10861763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 156 - 297
Target Start/End: Complemental strand, 38225 - 38084
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagtatc 255  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  38225 tgaagccccgatactccaaaaatgatgaagtatcgtatccgacacgtatctgataccgatacgccccgatacgtcccgatacgggtatcagaaaagtatc 38126  T
Q  256 gggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    ||||||||||||||||        ||||||||||||||||||    
T  38125 gggcaattaatatttatttcttaaaaaaacaatgaccgatac 38084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 30947456 - 30947600
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||| || ||||||||||||||| ||||||    
T  30947456 ctctgaagccccgatactacaaaaatggtgaagtatcgtatccgacacgtattcgataccgatacgccccgatacgttccgatacgggtatcgaaaaagt 30947555  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||||||||||||       ||||||||||||| |||||    
T  30947556 atcgggcaattaatatttatttttttgaaaaacaatgactgatac 30947600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 153 - 297
Target Start/End: Complemental strand, 26279982 - 26279838
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| || | |||| ||||||||||  |||||||||||||    
T  26279982 ctctgaagccccgatactctaaaaatggtgaagtatcgtatccgacacgtatcagataccgatatgctccgatacgtcccgatacacgtatcggaaaagt 26279883  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||||||||||||       ||||||||||||| |||||    
T  26279882 atcgggcaattaatatttatttttttgaaaaacaatgactgatac 26279838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 153 - 297
Target Start/End: Complemental strand, 37245443 - 37245309
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||          |||| ||||||||||||||||||||    
T  37245443 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatctgataccgatac----------gtcctgatacgggtatcggaaaagt 37245354  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||||||| ||||       |||||||||||||||||||    
T  37245353 atcgggcaattaatgtttatttttttgaaaaacaatgaccgatac 37245309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 153 - 297
Target Start/End: Complemental strand, 40820069 - 40819935
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||          |||||||||||||||||||||||||    
T  40820069 ctctaaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatgcgataccgatac----------gtcccgatacgggtatcggaaaagt 40819980  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||| ||||||||||||       |||||||||||||||||||    
T  40819979 atcgggaaattaatatttatttttttgaaaaacaatgaccgatac 40819935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 19928420 - 19928326
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcgg 246  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||  ||||||||||||||||||    
T  19928420 cctctaaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgctccgatacatcccgatacgggtatcgg 19928326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 25443518 - 25443584
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacg 218  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  25443518 cctctgaagccctgatactcaaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacg 25443584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 269
Target Start/End: Complemental strand, 22205469 - 22205363
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||| |||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||          || |||||||| |||||||||||||    
T  22205469 ctctaaagccccgatactccaaaaatggtgaagaatcgtgtccgatacgtatccgataccgatac----------gttccgatacgcgtatcggaaaagt 22205380  T
Q  253 atcgggcaattaatatt 269  Q
    |||||||||||||||||    
T  22205379 atcgggcaattaatatt 22205363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 22229270 - 22229376
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||| |||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||          || |||||||| |||||||||||||    
T  22229270 ctctaaagccccgatactccaaaaatggtgaagaatcgtgtccgatacgtatccgataccgatac----------gttccgatacgcgtatcggaaaagt 22229359  T
Q  253 atcgggcaattaatatt 269  Q
    |||||||||||||||||    
T  22229360 atcgggcaattaatatt 22229376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 25443577 - 25443617
Alignment:
Q  231 ccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  25443577 ccgatacgggtatcggaaaagtatcgagcaattaatattta 25443617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 36630390 - 36630440
Alignment:
Q  221 ctgatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||||||||||||||||| |||||||| ||||||| | |||||||||||||    
T  36630390 ctgatatgtcccgatacgtgtatcggagaagtatctgacaattaatattta 36630440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 36281517 - 36281585
Alignment:
Q  150 atcctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacg 218  Q
    ||||||| ||| ||||||||||||||||||  |||| ||||| ||||||| ||||| ||||| ||||||    
T  36281517 atcctcttaagtcccgatactccaaaaatgacgaagaatcgtgtctgacatgtatctgatactgatacg 36281585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 25443657 - 25443699
Alignment:
Q  229 tcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||||||||| |||||||| ||||||||| |||||||||||||    
T  25443657 tcccgatacgcgtatcggagaagtatcggacaattaatattta 25443699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 36630249 - 36630299
Alignment:
Q  221 ctgatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||||||||||||||| | |||||||| |||||||  ||||||||||||||    
T  36630249 ctgatatgtcccgatatgtgtatcggagaagtatcaagcaattaatattta 36630299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 15043355 - 15043307
Alignment:
Q  223 gatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||| ||||||||||| |||||||  ||||||||| |||||||||||||    
T  15043355 gatacgtcccgatacgtgtatcggtgaagtatcggccaattaatattta 15043307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 26279831 - 26279783
Alignment:
Q  223 gatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||| ||||||||||| |||||||| |||||||||| | ||||||||||    
T  26279831 gatacgtcccgatacgcgtatcggagaagtatcgggaagttaatattta 26279783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 30947607 - 30947655
Alignment:
Q  223 gatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||| ||||||||||| |||||||| ||||||| | |||||||||||||    
T  30947607 gatacgtcccgatacgcgtatcggagaagtatcagacaattaatattta 30947655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 37245302 - 37245254
Alignment:
Q  223 gatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||| ||| ||||||| |||||||||||||||| | |||||||||||||    
T  37245302 gatacgtcgcgatacgcgtatcggaaaagtatcagacaattaatattta 37245254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 40819928 - 40819880
Alignment:
Q  223 gatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||| ||||||||||| |||||||| ||||||||| || ||||||||||    
T  40819928 gatacgtcccgatacgcgtatcggagaagtatcggacagttaatattta 40819880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 21111999 - 21112143
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||| ||| ||||||||||||||||||||||||||||||||| || ||||||| |||| |||||||||  ||||||||||||||||||||||||||||||    
T  21111999 ctctaaagtcccgatactccaaaaatggtgaagtatcgtatccgatacgtatcggatatcgatacgcctcgatatgtcccgatacgggtatcggaaaagt 21112098  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||||||||||||       |||||||||||||||||||    
T  21112099 atcgggcaattaatatttatttttttgaaaaacaatgaccgatac 21112143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 150 - 297
Target Start/End: Original strand, 11382411 - 11382558
Alignment:
Q  150 atcctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaa 249  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||  |||||||||||||||| ||||    
T  11382411 atcctctaaagtcccgatactccaaaaatggtgaagtatcgtatcagacacgtatccgatatcgatacgccccgatacatcccgatacgggtatcagaaa 11382510  T
Q  250 agtatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||| |||||||||||||       |||||||||||||||||||    
T  11382511 agtatcggacaattaatatttatttttttgaaaaacaatgaccgatac 11382558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 8861950 - 8862084
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||| ||||||||||||||||| |    
T  8861950 ctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgc----------cccaatacgggtatcggaaaaat 8862039  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||||||||||||       |||||||||||||||||||    
T  8862040 atcgggcaattaatatttatttttttgaaaaacaatgaccgatac 8862084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 11382565 - 11382613
Alignment:
Q  223 gatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||| ||||||||||| |||||| | ||||||||| |||||||||||||    
T  11382565 gatacgtcccgatacgcgtatcgaagaagtatcggacaattaatattta 11382613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 153 - 296
Target Start/End: Original strand, 4533371 - 4533514
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||||||||| ||||||| | ||||||||||||||||||||| |||||||||| ||||||||||||| | |||| || ||||||||||||||||||||||    
T  4533371 ctctgaagccgcgatacttcgaaaatggtgaagtatcgtatccgacacgtatctgataccgatacgctccgatacgttccgatacgggtatcggaaaagt 4533470  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgata 296  Q
    |||||||||||||||||||       ||||||||||||||||||    
T  4533471 atcgggcaattaatatttatttttttgaaaaacaatgaccgata 4533514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 39579803 - 39579937
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          |||||| |||||||||||||||||||||||||    
T  39579803 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatctgata----------ctgatacgtcccgatacgggtatcggaaaagt 39579892  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||||||||||||       |||||||||||||| ||||    
T  39579893 atcgggcaattaatatttatttttttgaaaaacaatgaccaatac 39579937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 42864250 - 42864368
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||| ||||||| ||  |||||||| ||||    
T  42864250 ctctgaagccccgaaactccaaaaatggtgaagtatcgtatccgacacgtatccgataccgatacgccccaatacgtcccgacacttgtatcggagaagt 42864349  T
Q  253 atcgggcaattaatattta 271  Q
    ||||| || ||||||||||    
T  42864350 atcggacagttaatattta 42864368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 297
Target Start/End: Original strand, 39674087 - 39674222
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaag 251  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||          |||||||||||||||||||||| ||||||    
T  39674087 cctctgaagccccgatacttcaaaaatggtgaagtatcgtatccgacacgtattcgatacc----------gatatgtcccgatacgggtatcagaaaag 39674176  T
Q  252 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    ||||||||||||||||||||        ||||||||||||||||||    
T  39674177 tatcgggcaattaatatttatttttttaaaaaacaatgaccgatac 39674222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 53363200 - 53363109
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtat 243  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||| |||| ||||||||||| ||||    
T  53363200 cctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacaccccgatacgtcccgatacgcgtat 53363109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 152 - 297
Target Start/End: Complemental strand, 53330861 - 53330726
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||          | ||||||| ||||||||||||    
T  53330861 cctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacgc----------ctcgatacgcgtatcggaaaag 53330772  T
Q  252 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||| |||||||||||||       |||||||||||||| ||||    
T  53330771 tatcggacaattaatatttatttttttgaaaaacaatgaccaatac 53330726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 152 - 297
Target Start/End: Complemental strand, 53334545 - 53334410
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||          | ||||||| ||||||||||||    
T  53334545 cctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacgc----------ctcgatacgcgtatcggaaaag 53334456  T
Q  252 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||| |||||||||||||       |||||||||||||| ||||    
T  53334455 tatcggacaattaatatttatttttttgaaaaacaatgaccaatac 53334410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 152 - 297
Target Start/End: Complemental strand, 53338222 - 53338087
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaag 251  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||          | ||||||| ||||||||||||    
T  53338222 cctctgaagccccgatactccaaaaatggtgaagtatcgtatccgacatgtatctgataccgatacgc----------ctcgatacgcgtatcggaaaag 53338133  T
Q  252 tatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||| |||||||||||||       |||||||||||||| ||||    
T  53338132 tatcggacaattaatatttatttttttgaaaaacaatgaccaatac 53338087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 27391413 - 27391352
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatac 217  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  27391413 tgaagcccctatactccaaaaatggtgaagaatcgtgtctgacacgtatccgataccgatac 27391352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 958813 - 958879
Alignment:
Q  231 ccgatacgggtatcggaaaagtatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  958813 ccgatacgggtatcggaaaagtatcgggcaattaatatttatatttttgaaaaacaatgaccgatac 958879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 25041248 - 25041381
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagt 252  Q
    |||||||||||||||||| ||||||||||||||||||||||||           |||| ||||| |  |  ||| ||||||||||| ||||| |||||||    
T  25041248 ctctgaagccccgatacttcaaaaatggtgaagtatcgtatct-----------gataacgatatgttccaatacgtcccgatacgagtatcagaaaagt 25041336  T
Q  253 atcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||| ||||||||||||||       |||||||||||||||||||    
T  25041337 atcgcgcaattaatatttatttttttgaaaaacaatgaccgatac 25041381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 24645699 - 24645647
Alignment:
Q  166 atactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacg 218  Q
    |||||||||||||||||||| ||||| |  |||||||||||||||| ||||||    
T  24645699 atactccaaaaatggtgaagaatcgtgttcgacacgtatccgatactgatacg 24645647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 41530533 - 41530477
Alignment:
Q  160 gccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgata 216  Q
    |||| |||||| |||||||||||||| ||||| || ||||||||||||| |||||||    
T  41530533 gccctgatacttcaaaaatggtgaagaatcgtgtccgacacgtatccgacaccgata 41530477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 30551661 - 30551712
Alignment:
Q  154 tctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatc 205  Q
    ||||||| |||||||||  ||||||||||||| ||||| |||||||||||||    
T  30551661 tctgaagtcccgatactataaaaatggtgaagaatcgtgtctgacacgtatc 30551712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 29359666 - 29359722
Alignment:
Q  160 gccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgata 216  Q
    ||||||||||| ||||||||  |||| ||||| ||  ||||||||||||||||||||    
T  29359666 gccccgatacttcaaaaatgacgaagaatcgtgtccaacacgtatccgataccgata 29359722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 39579944 - 39579992
Alignment:
Q  223 gatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||| ||||||||| | |||||||| ||||||||| |||||||||||||    
T  39579944 gatacgtcccgatatgcgtatcggagaagtatcggacaattaatattta 39579992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 39674229 - 39674277
Alignment:
Q  223 gatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||| ||||||||||| |||||| ||||||||||| || ||||||||||    
T  39674229 gatacgtcccgatacgcgtatcgcaaaagtatcggacagttaatattta 39674277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 156 - 297
Target Start/End: Complemental strand, 46398268 - 46398127
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgtcccgatacgggtatcggaaaagtatc 255  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||| ||||||||||||| | |||| || |||||||||||||| ||||||| ||    
T  46398268 tgaagccccgatactccaaaaatggtgtagtatcgtatccaacacgtatctgataccgatacgctccgatacgttccgatacgggtatcagaaaagtgtc 46398169  T
Q  256 gggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    ||||||||||||||||       |||||||||||||||||||    
T  46398168 gggcaattaatatttatttttttgaaaaacaatgaccgatac 46398127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 29096170 - 29096232
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacg 218  Q
    ||||||||||||||| |||||||| ||||| ||||| ||| ||||||||||||||| ||||||    
T  29096170 tgaagccccgatacttcaaaaatgatgaagaatcgtgtctaacacgtatccgatactgatacg 29096232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 41430384 - 41430449
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccc 221  Q
    |||||||||  ||||||||||||||||||| |||||  ||||| ||||||| ||||||| ||||||    
T  41430384 tgaagccccagtactccaaaaatggtgaagaatcgtgcctgacccgtatccaataccgaaacgccc 41430449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 46398120 - 46398072
Alignment:
Q  223 gatatgtcccgatacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    |||| ||||||||||  |||||||| ||||||||| |||||||||||||    
T  46398120 gatacgtcccgatacacgtatcggagaagtatcggacaattaatattta 46398072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 563416 - 563339
Alignment:
Q  152 cctctgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgatatgt 229  Q
    ||||| ||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||||||||| |||||||    
T  563416 cctctaaagccccgatactccaaaaatcgcgaagaatcgtatctgacacatatccgataccgatacgccccgatatgt 563339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 54260056 - 54260100
Alignment:
Q  153 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctga 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  54260056 ctctgaagccccgatactccaaaaatggtgaagtatcgtatctga 54260100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 54260117 - 54260153
Alignment:
Q  235 tacgggtatcggaaaagtatcgggcaattaatattta 271  Q
    ||||||||| |||||||||||||||||||||||||||    
T  54260117 tacgggtatgggaaaagtatcgggcaattaatattta 54260153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 32760428 - 32760483
Alignment:
Q  163 ccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacg 218  Q
    |||||||| |||||||||||||| ||||| ||  ||||||||| ||||||||||||    
T  32760428 ccgatacttcaaaaatggtgaagaatcgtgtccaacacgtatctgataccgatacg 32760483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 26261054 - 26261121
Alignment:
Q  230 cccgatacgggtatcggaaaagtatcgggcaattaatatttannnnnnngaaaaacaatgaccgatac 297  Q
    |||||||||  ||||||| |||||||||||||||||||||||       |||||| ||||||||||||    
T  26261054 cccgatacgcatatcggagaagtatcgggcaattaatatttatttttatgaaaaaaaatgaccgatac 26261121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 26261000 - 26261028
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaa 184  Q
    |||||||||||||||||||||||||||||    
T  26261000 tgaagccccgatactccaaaaatggtgaa 26261028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 14499 - 14429
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgccctgata 226  Q
    |||||||||  ||||||||||||||||||| |||||  ||||| ||||||| |||||||||||||| ||||    
T  14499 tgaagccccactactccaaaaatggtgaagaatcgtgcctgacgcgtatccaataccgatacgccccgata 14429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 257
Target Start/End: Complemental strand, 4500 - 4398
Alignment:
Q  156 tgaagccccgatactccaaaaatggtgaagtatcgtatctgacacgtatccgataccgatacgc-cctgatatgtcccgatacgggtatcggaaaagtat 254  Q
    ||||||| |||||||| ||||||||||||||||||| || || | | | ||||||||||||| |  | ||||  | |||||||  |||||||||||||||    
T  4500 tgaagcctcgatactctaaaaatggtgaagtatcgtgtccgataagcacccgataccgatactcttccgatacattccgatactcgtatcggaaaagtat 4401  T
Q  255 cgg 257  Q
    |||    
T  4400 cgg 4398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University