View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_low_12 (Length: 469)
Name: NF9240_low_12
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 243 - 460
Target Start/End: Complemental strand, 6330251 - 6330034
Alignment:
| Q |
243 |
atcaacacaggaagtgaagctaacattctctacatgtcagcattcttgaaaatgaggctatcagagtcaatgctgcaaccgtgtgatgcatttctgaaag |
342 |
Q |
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| T |
6330251 |
atcaacacaggaagtgaagctaacattctctacatgtcagcattcttgaaaatgaggctatcagagtcaatgctgcaaccgtgtgatgcatttctgaaag |
6330152 |
T |
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| Q |
343 |
atgttcttggaaaaggtgggaatgccaagatgatcaaggtgaggtacttggtcgttgattcacactctatttataatgttgttattggtatgcctactct |
442 |
Q |
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| T |
6330151 |
atgttcttggaaaaggtgggaatgccaagatgatcaaggtgaggtacttggtcgttgattcacactctatttataatgttgttattggtatgcctactct |
6330052 |
T |
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| Q |
443 |
tagtgatttgagaataat |
460 |
Q |
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||||||||||||| |||| |
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| T |
6330051 |
tagtgatttgagagtaat |
6330034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 6330503 - 6330275
Alignment:
| Q |
18 |
ataagaaacaaaaccaccttcaggatttaaagtttcaatctaactctgtcaaagaagatggaaaaaagcaagaagaaacgaagaaaggatcatagttcaa |
117 |
Q |
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| T |
6330503 |
ataagaaacaaaaccaccttcaggatttaaagtttcaatctaactctgtcaaagaagatggaaaaaagcaagaagaaacgaagaaaggatcatagttcaa |
6330404 |
T |
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| Q |
118 |
caagaaacgatgatgatggtagtgacattattgaaccagaaaacatgccaatatcgttttcaaacaaagactatgcattattcaaaggaactagtgctcc |
217 |
Q |
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| T |
6330403 |
caagaaacgatgatgatggtagtgacattattgaaccagaaaacatgccaatatcgttttcaaccaaagactatgc---attcaaaggaactagtgctct |
6330307 |
T |
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| Q |
218 |
tcttcctatggtcatcaaactccaaatcaaca |
249 |
Q |
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| T |
6330306 |
tcttcctatggtcatcaaacaccaaatcaaca |
6330275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 6318133 - 6318101
Alignment:
| Q |
217 |
ctcttcctatggtcatcaaactccaaatcaaca |
249 |
Q |
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| T |
6318133 |
ctcttcctatggtaatcaaactccaaatcaaca |
6318101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 6327375 - 6327343
Alignment:
| Q |
217 |
ctcttcctatggtcatcaaactccaaatcaaca |
249 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
6327375 |
ctcttcctatggtaatcaaactccaaatcaaca |
6327343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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