View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9240_low_15 (Length: 381)

Name: NF9240_low_15
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9240_low_15
NF9240_low_15
[»] chr5 (16 HSPs)
chr5 (16-339)||(4841802-4842125)
chr5 (340-381)||(13276819-13276860)
chr5 (339-381)||(4031880-4031922)
chr5 (340-381)||(8447077-8447118)
chr5 (340-381)||(12372314-12372355)
chr5 (340-381)||(18654296-18654337)
chr5 (340-381)||(18655729-18655770)
chr5 (340-381)||(39350722-39350763)
chr5 (342-381)||(19228840-19228879)
chr5 (339-381)||(6803701-6803743)
chr5 (340-381)||(12373798-12373839)
chr5 (340-381)||(19230150-19230191)
chr5 (340-381)||(39349480-39349521)
chr5 (343-378)||(6801977-6802012)
chr5 (340-381)||(9081979-9082020)
chr5 (341-381)||(25001643-25001683)
[»] chr6 (15 HSPs)
chr6 (323-381)||(29477742-29477800)
chr6 (339-381)||(18574370-18574412)
chr6 (340-381)||(11801419-11801460)
chr6 (340-381)||(18572885-18572926)
chr6 (340-381)||(32349114-32349155)
chr6 (338-381)||(3000870-3000913)
chr6 (338-381)||(34995350-34995393)
chr6 (343-381)||(19383224-19383262)
chr6 (343-381)||(32712358-32712396)
chr6 (340-381)||(29479271-29479312)
chr6 (180-214)||(25073314-25073348)
chr6 (340-381)||(32347808-32347849)
chr6 (340-381)||(32713960-32714001)
chr6 (170-214)||(4089464-4089508)
chr6 (182-214)||(5613475-5613507)
[»] chr8 (22 HSPs)
chr8 (328-381)||(41638229-41638282)
chr8 (339-381)||(26364740-26364782)
chr8 (340-381)||(20308923-20308964)
chr8 (340-381)||(21095556-21095597)
chr8 (340-381)||(3714597-3714638)
chr8 (340-381)||(9244065-9244106)
chr8 (280-337)||(36052741-36052797)
chr8 (338-381)||(26366271-26366314)
chr8 (342-381)||(34642667-34642706)
chr8 (132-214)||(13406359-13406441)
chr8 (343-381)||(43586021-43586059)
chr8 (340-381)||(43584408-43584449)
chr8 (341-381)||(522174-522214)
chr8 (174-214)||(1839888-1839928)
chr8 (179-214)||(41455235-41455270)
chr8 (339-381)||(20310129-20310171)
chr8 (339-381)||(21096762-21096804)
chr8 (343-381)||(30640801-30640839)
chr8 (340-377)||(22012157-22012194)
chr8 (340-377)||(22013320-22013357)
chr8 (340-381)||(43134126-43134167)
chr8 (341-381)||(34644036-34644076)
[»] chr7 (42 HSPs)
chr7 (339-381)||(9391518-9391560)
chr7 (339-381)||(13750713-13750755)
chr7 (340-381)||(19217627-19217668)
chr7 (340-381)||(43962646-43962687)
chr7 (340-381)||(44417457-44417498)
chr7 (340-381)||(48792443-48792484)
chr7 (341-381)||(7057406-7057446)
chr7 (341-381)||(26005412-26005452)
chr7 (338-381)||(45688865-45688908)
chr7 (343-381)||(3537429-3537467)
chr7 (339-381)||(3538640-3538682)
chr7 (339-381)||(44231919-44231961)
chr7 (340-381)||(29186664-29186705)
chr7 (340-381)||(42611435-42611476)
chr7 (340-381)||(43113674-43113715)
chr7 (340-381)||(43960945-43960986)
chr7 (340-381)||(48793593-48793634)
chr7 (338-381)||(37237302-37237345)
chr7 (340-378)||(19008931-19008969)
chr7 (340-378)||(26006823-26006861)
chr7 (339-381)||(27072731-27072773)
chr7 (339-381)||(27205540-27205582)
chr7 (340-381)||(7011633-7011674)
chr7 (340-381)||(7026991-7027032)
chr7 (340-381)||(18788637-18788678)
chr7 (340-381)||(27071020-27071061)
chr7 (340-381)||(27207252-27207293)
chr7 (340-381)||(29188107-29188148)
chr7 (340-381)||(32519826-32519867)
chr7 (280-337)||(33254421-33254478)
chr7 (340-381)||(37235813-37235854)
chr7 (340-378)||(19016777-19016815)
chr7 (339-381)||(24653748-24653790)
chr7 (339-381)||(44748580-44748622)
chr7 (343-373)||(45400095-45400125)
chr7 (340-377)||(8661678-8661715)
chr7 (340-381)||(9392892-9392933)
chr7 (340-381)||(13749063-13749104)
chr7 (341-378)||(18787149-18787186)
chr7 (340-381)||(44230427-44230468)
chr7 (340-381)||(44420599-44420640)
chr7 (341-377)||(9357858-9357894)
[»] chr3 (45 HSPs)
chr3 (339-381)||(31938384-31938426)
chr3 (340-381)||(10979252-10979293)
chr3 (340-381)||(11348548-11348589)
chr3 (340-381)||(31937035-31937076)
chr3 (340-381)||(34014508-34014549)
chr3 (341-381)||(35759308-35759348)
chr3 (342-381)||(43394131-43394170)
chr3 (339-381)||(2233382-2233424)
chr3 (343-381)||(5691171-5691209)
chr3 (343-381)||(37610803-37610841)
chr3 (340-381)||(2232602-2232643)
chr3 (340-381)||(17116202-17116243)
chr3 (340-381)||(17117476-17117517)
chr3 (340-381)||(21727910-21727951)
chr3 (340-381)||(23073451-23073492)
chr3 (340-381)||(24376505-24376546)
chr3 (340-381)||(28777764-28777805)
chr3 (340-381)||(53101850-53101891)
chr3 (340-381)||(54354468-54354509)
chr3 (341-381)||(37609322-37609362)
chr3 (341-381)||(53766043-53766083)
chr3 (343-381)||(15290566-15290604)
chr3 (343-381)||(46902334-46902372)
chr3 (339-381)||(50881186-50881228)
chr3 (339-381)||(53178700-53178742)
chr3 (343-381)||(55209785-55209823)
chr3 (340-381)||(23091191-23091232)
chr3 (340-381)||(35758064-35758105)
chr3 (344-381)||(43392630-43392667)
chr3 (340-381)||(54353023-54353064)
chr3 (341-381)||(11346813-11346853)
chr3 (341-381)||(47429628-47429668)
chr3 (338-381)||(44116763-44116806)
chr3 (342-381)||(52525436-52525475)
chr3 (339-381)||(46903701-46903743)
chr3 (343-377)||(52521930-52521964)
chr3 (340-381)||(5689725-5689766)
chr3 (340-381)||(17742370-17742411)
chr3 (340-381)||(19043690-19043731)
chr3 (340-381)||(34015845-34015886)
chr3 (340-381)||(46986167-46986208)
chr3 (177-214)||(48444483-48444520)
chr3 (341-381)||(27749107-27749147)
chr3 (182-214)||(35283068-35283100)
chr3 (341-373)||(53180888-53180920)
[»] scaffold1425 (2 HSPs)
scaffold1425 (340-381)||(1678-1719)
scaffold1425 (340-381)||(134-175)
[»] scaffold0141 (2 HSPs)
scaffold0141 (340-381)||(31033-31074)
scaffold0141 (339-381)||(35362-35404)
[»] scaffold0049 (2 HSPs)
scaffold0049 (340-381)||(83738-83779)
scaffold0049 (339-381)||(79408-79450)
[»] chr4 (30 HSPs)
chr4 (340-381)||(10804272-10804313)
chr4 (333-381)||(10802882-10802930)
chr4 (340-379)||(22624389-22624428)
chr4 (334-381)||(38032497-38032544)
chr4 (343-381)||(17357940-17357978)
chr4 (340-381)||(7261620-7261661)
chr4 (340-381)||(17356361-17356402)
chr4 (340-381)||(18091580-18091621)
chr4 (340-381)||(22621867-22621908)
chr4 (340-381)||(34121299-34121340)
chr4 (340-381)||(34122879-34122920)
chr4 (340-381)||(38031168-38031209)
chr4 (280-337)||(46672814-46672871)
chr4 (340-381)||(48463061-48463102)
chr4 (130-216)||(52430621-52430709)
chr4 (175-214)||(4442047-4442086)
chr4 (340-381)||(8814135-8814176)
chr4 (340-381)||(8815434-8815475)
chr4 (177-214)||(21442999-21443036)
chr4 (340-381)||(35191817-35191858)
chr4 (340-381)||(48080270-48080311)
chr4 (342-381)||(48081404-48081443)
chr4 (338-381)||(56233722-56233765)
chr4 (339-381)||(5574199-5574241)
chr4 (180-214)||(42650615-42650649)
chr4 (180-214)||(46670013-46670047)
chr4 (340-381)||(56235097-56235138)
chr4 (174-214)||(9119853-9119893)
chr4 (130-216)||(13985030-13985118)
chr4 (341-381)||(23758048-23758088)
[»] chr2 (18 HSPs)
chr2 (340-381)||(23833947-23833988)
chr2 (340-381)||(27891106-27891147)
chr2 (340-381)||(27892413-27892454)
chr2 (340-381)||(16604266-16604307)
chr2 (280-337)||(37622865-37622922)
chr2 (280-335)||(16492770-16492826)
chr2 (338-381)||(16602723-16602766)
chr2 (341-379)||(19577405-19577443)
chr2 (339-381)||(43814520-43814562)
chr2 (340-381)||(5034893-5034934)
chr2 (280-337)||(8975179-8975236)
chr2 (169-214)||(30072129-30072174)
chr2 (340-381)||(38244032-38244073)
chr2 (338-381)||(23832966-23833009)
chr2 (179-214)||(31584833-31584868)
chr2 (176-214)||(9087532-9087570)
chr2 (180-214)||(44954064-44954098)
chr2 (174-211)||(15803161-15803198)
[»] chr1 (25 HSPs)
chr1 (340-381)||(1823369-1823410)
chr1 (340-381)||(52086627-52086668)
chr1 (341-381)||(25181502-25181542)
chr1 (339-381)||(51468338-51468380)
chr1 (340-381)||(7110226-7110267)
chr1 (340-381)||(18820833-18820874)
chr1 (340-381)||(51693147-51693188)
chr1 (340-381)||(52759363-52759404)
chr1 (339-381)||(5488944-5488986)
chr1 (280-337)||(29702483-29702540)
chr1 (340-381)||(52761613-52761654)
chr1 (280-339)||(47632984-47633041)
chr1 (179-214)||(17556645-17556680)
chr1 (179-214)||(24437000-24437035)
chr1 (346-381)||(50485073-50485108)
chr1 (339-381)||(17244174-17244216)
chr1 (343-381)||(45229680-45229718)
chr1 (340-381)||(17245741-17245782)
chr1 (340-381)||(18819262-18819303)
chr1 (254-295)||(24633849-24633890)
chr1 (252-297)||(25586267-25586312)
chr1 (340-381)||(40187603-40187644)
chr1 (344-381)||(47532961-47532998)
chr1 (340-381)||(51468978-51469019)
chr1 (341-381)||(5488502-5488542)
[»] scaffold0018 (1 HSPs)
scaffold0018 (339-381)||(25422-25464)
[»] scaffold0878 (1 HSPs)
scaffold0878 (340-381)||(3104-3145)
[»] scaffold0380 (1 HSPs)
scaffold0380 (280-337)||(5005-5062)
[»] scaffold0026 (1 HSPs)
scaffold0026 (340-381)||(104301-104342)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 4842125 - 4841802
Alignment:
Q  16 caatgacttagataagcaacatacaaaatacgttgattcaaaataaaaaagaacttaggttttatttgcaagtttgaaagggaatagaatgaaatgtttg 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||| ||||||||||| |||  || |||||| ||     
T  4842125 caatgacttagataagcaacatacaaaatacgttcattcaaaataaaaaacaacttaggctttgtttgcgagtttgaaaggaaatgaaaggaaatgctta 4842026  T
Q  116 aagnnnnnnnnngaaaggagtaagtgaaaaaa-tagaagacgttgaaaggaggcttttcgaggacttatttttcatcaaaatataaaaccctcctcattt 214  Q
    ||          ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  4842025 aaaaaaaaaaaggaaag-agtaagtgaaaaaaatagaagacgttgaaaggaggcttttggaggacttattcttcatcaaaatatacaaccctcctcattt 4841927  T
Q  215 agnnnnnnnnnnnnttatattagaggagcagaggtggacccaccataaggtatggtgtggttgcagccacaccagattattactcatttcttaatagata 314  Q
    |             || |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4841926 aagaaactaaaaaattgtatttgaggagcagaggtggacccaccataaggtatggtgtggttgtagccacaccagattattactcatttcttaatagata 4841827  T
Q  315 tatacacctattatagtttaaagat 339  Q
    |||||||||||||||||||||||||    
T  4841826 tatacacctattatagtttaaagat 4841802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 13276819 - 13276860
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13276819 ggcttaattgatctgccggtcccttaacttatttcttttatt 13276860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 4031880 - 4031922
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  4031880 tggcttaattgatctgccggtcacttaacttatttcttttatt 4031922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 8447077 - 8447118
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  8447077 ggcttaattgatctaccggtcccttaacttatttcttttatt 8447118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 12372314 - 12372355
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  12372314 ggcttaattgatctgccggtcccttaacttatttgttttatt 12372355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 18654296 - 18654337
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  18654296 ggcttaattgatctgccggtcccttaatttatttcttttatt 18654337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 18655770 - 18655729
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  18655770 ggcttaattgatctgccggttccttaacttatttcttttatt 18655729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 39350763 - 39350722
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  39350763 ggcttaattgatatgccggtcccttaacttatttcttttatt 39350722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 19228840 - 19228879
Alignment:
Q  342 cttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  19228840 cttaattgatctgccggtcccttaatttatttcttttatt 19228879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 6803743 - 6803701
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  6803743 tggcttaattgatctgtcggtcccttaatttatttcttttatt 6803701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 12373839 - 12373798
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  12373839 ggcttaattgatccgccggtcctttaacttatttcttttatt 12373798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 19230191 - 19230150
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  19230191 ggcttaattgatctgccgatcccttaatttatttcttttatt 19230150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 39349480 - 39349521
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  39349480 ggcttaattgatctgacggtcctttaacttatttcttttatt 39349521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 6801977 - 6802012
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttctttt 378  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6801977 ttaattgatctgctggtcccttaacttatttctttt 6802012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 9081979 - 9082020
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| ||||| |||||||| ||||||||||||    
T  9081979 ggcttaattgatctaccggttccttaactcatttcttttatt 9082020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 25001643 - 25001683
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||| || |||||| |||||||||||||||||||    
T  25001643 gcttaattgatatgtcggtcctttaacttatttcttttatt 25001683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 29477742 - 29477800
Alignment:
Q  323 tattatagtttaaagatggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||    
T  29477742 tattatagtataaaattggcttaattgatctgccggtcccttaacttatttcttttatt 29477800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 18574412 - 18574370
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  18574412 tggcttaattgatctgccggtcccttgacttatttcttttatt 18574370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 11801460 - 11801419
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  11801460 ggcttaattgatctgccggtcccttaatttatttcttttatt 11801419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 18572885 - 18572926
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  18572885 ggcttaattgatctgccggtccgttaacttatttcttttatt 18572926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 32349155 - 32349114
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  32349155 ggcttaattgatctgccggtcccttaatttatttcttttatt 32349114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 3000913 - 3000870
Alignment:
Q  338 atggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| || ||||||||||||||||||||||||||    
T  3000913 atggcttaattgatttgtcggtcccttaacttatttcttttatt 3000870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 34995350 - 34995393
Alignment:
Q  338 atggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  34995350 atggcttaattgatctgtcggtcctttaacttatttcttttatt 34995393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 19383262 - 19383224
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  19383262 ttaattgatccgccggtcccttaacttatttcttttatt 19383224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 32712358 - 32712396
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  32712358 ttaattgatctgtcggtcccttaacttatttcttttatt 32712396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 29479312 - 29479271
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  29479312 ggcttaattgatctgccgatcccttaaattatttcttttatt 29479271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 25073348 - 25073314
Alignment:
Q  180 ttatttttcatcaaaatataaaaccctcctcattt 214  Q
    ||||||||| |||||||||||||||||||||||||    
T  25073348 ttatttttcttcaaaatataaaaccctcctcattt 25073314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 32347808 - 32347849
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| ||| |||||| ||||||||||||||    
T  32347808 ggcttaattgatctgctggttccttaatttatttcttttatt 32347849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 32714001 - 32713960
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| |||||  ||||||||||||||||||    
T  32714001 ggcttaattgatctgctggtcctgtaacttatttcttttatt 32713960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 4089508 - 4089464
Alignment:
Q  170 tttcgaggacttatttttcatcaaaatataaaaccctcctcattt 214  Q
    ||||| || |||||||||| |||||||||||||| ||||||||||    
T  4089508 tttcgggggcttatttttcttcaaaatataaaactctcctcattt 4089464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 5613475 - 5613507
Alignment:
Q  182 atttttcatcaaaatataaaaccctcctcattt 214  Q
    ||||||| |||||||||||||||||||||||||    
T  5613475 atttttcttcaaaatataaaaccctcctcattt 5613507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 41638282 - 41638229
Alignment:
Q  328 tagtttaaagatggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41638282 tagttaaaatatggcttaattgatctgccggtcccttaacttatttcttttatt 41638229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 26364740 - 26364782
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26364740 tggcttaattgatctgccggtcccttaacttatttcttttatt 26364782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 20308923 - 20308964
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  20308923 ggcttaattgatctgccggtcccttaacttatttcttttatt 20308964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 21095556 - 21095597
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21095556 ggcttaattgatctgccggtcccttaacttatttcttttatt 21095597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 3714638 - 3714597
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  3714638 ggcttaattgatctgccggttccttaacttatttcttttatt 3714597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 9244065 - 9244106
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  9244065 ggcttaattgatctgctggtcccttaacttatttcttttatt 9244106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 36052797 - 36052741
Alignment:
Q  280 gccacaccagattattactcatttcttaatagatatatacacctattatagtttaaag 337  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||    
T  36052797 gccacaccagattattacccattt-ttaataggtatatacacctataatagtttaaag 36052741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 26366314 - 26366271
Alignment:
Q  338 atggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  26366314 atggcttaattgatctgccgatcctttaacttatttcttttatt 26366271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 34642667 - 34642706
Alignment:
Q  342 cttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  34642667 cttaattgatctgccggtctcttaacttatttcttttatt 34642706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 13406359 - 13406441
Alignment:
Q  132 ggagtaagtgaaaaaatagaagacgttgaaaggaggcttttcgaggacttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||||||||| ||||||||| ||||||||  ||||| |||| | || ||||| |||| ||||||||||||||  |||||||||    
T  13406359 ggagtaagtggaaaaatagaggacgttgagtggagggttttggggggcttatatttcttcaaaatataaaacaatcctcattt 13406441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 43586059 - 43586021
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  43586059 ttaattgatctgtcggtcccttaacttatttcttttatt 43586021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 43584408 - 43584449
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  43584408 ggcttaattgatctgtcggtccattaacttatttcttttatt 43584449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 522214 - 522174
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  522214 gcttaattaatctgtcggtcccttaacttatttcttttatt 522174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 1839928 - 1839888
Alignment:
Q  174 gaggacttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||| |||||||||| |||||||||||||||||||||||||    
T  1839928 gagggcttatttttcttcaaaatataaaaccctcctcattt 1839888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 41455235 - 41455270
Alignment:
Q  179 cttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||||||||| |||||||||||||||||||||||||    
T  41455235 cttatttttcttcaaaatataaaaccctcctcattt 41455270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 20310171 - 20310129
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||| ||||||  ||||||||||||||||||||||||    
T  20310171 tggcttaattaatctgctcgtcccttaacttatttcttttatt 20310129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 21096804 - 21096762
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||| ||||||  ||||||||||||||||||||||||    
T  21096804 tggcttaattaatctgctcgtcccttaacttatttcttttatt 21096762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 30640801 - 30640839
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  30640801 ttaattgatatgccggtcctttaacttatttcttttatt 30640839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 22012157 - 22012194
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttt 377  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  22012157 ggcttaattgaactgtcggtcccttaacttatttcttt 22012194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 22013357 - 22013320
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttt 377  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  22013357 ggcttaattgaactgctggtcccttaacttatttcttt 22013320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 43134167 - 43134126
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| || |||||| |||||||||||||||||||    
T  43134167 ggcttaattgatatgtcggtcctttaacttatttcttttatt 43134126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 34644076 - 34644036
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| | ||||||||| ||||||||||||||||    
T  34644076 gcttaattgatccgtcggtcccttgacttatttcttttatt 34644036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 9391518 - 9391560
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9391518 tggcttaattgatctgccggtcccttaacttatttcttttatt 9391560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 13750755 - 13750713
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13750755 tggcttaattgatctgccggtcccttaacttatttcttttatt 13750713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 19217627 - 19217668
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19217627 ggcttaattgatctgccggtcccttaacttatttcttttatt 19217668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 43962687 - 43962646
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43962687 ggcttaattgatctgccggtcccttaacttatttcttttatt 43962646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 44417457 - 44417498
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44417457 ggcttaattgatctgccggtcccttaacttatttcttttatt 44417498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 48792443 - 48792484
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  48792443 ggcttaattgatctgccggtcccttaacttatttcttttatt 48792484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 7057446 - 7057406
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7057446 gcttaattgatctgccggtcccttaacttatttcttttatt 7057406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 26005412 - 26005452
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26005412 gcttaattgatctgccggtcccttaacttatttcttttatt 26005452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 45688865 - 45688908
Alignment:
Q  338 atggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  45688865 atggcttaattgatctgtcggtcccttaacttatttcttttatt 45688908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 3537429 - 3537467
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3537429 ttaattgatctgccggtcccttaacttatttcttttatt 3537467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 3538682 - 3538640
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  3538682 tggcttaattgatccgccggtcccttaacttatttcttttatt 3538640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 44231961 - 44231919
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  44231961 tggcttaattgatctgtcggtcccttaacttatttcttttatt 44231919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 29186664 - 29186705
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  29186664 ggcttaattgatctgctggtcccttaacttatttcttttatt 29186705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 42611435 - 42611476
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  42611435 ggcttaattgatctgccggtcctttaacttatttcttttatt 42611476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 43113674 - 43113715
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  43113674 ggcttaattgatctgtcggtcccttaacttatttcttttatt 43113715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 43960945 - 43960986
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  43960945 ggcttaattgatctgtcggtcccttaacttatttcttttatt 43960986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 48793634 - 48793593
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  48793634 ggcttaattgatttgccggtcccttaacttatttcttttatt 48793593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 37237345 - 37237302
Alignment:
Q  338 atggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  37237345 atggcttaattgatctgcccgtcccttaatttatttcttttatt 37237302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 19008931 - 19008969
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttctttt 378  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  19008931 ggcttaattgatctgtcggtcccttaacttatttctttt 19008969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 26006861 - 26006823
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttctttt 378  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  26006861 ggcttaattgatctgtcggtcccttaacttatttctttt 26006823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 27072773 - 27072731
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  27072773 tggcttaattgatctgtcggtcccttaatttatttcttttatt 27072731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 27205540 - 27205582
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  27205540 tggcttaattgatctgtcggtcccttaatttatttcttttatt 27205582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 7011633 - 7011674
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  7011633 ggcttaattgatctgtcagtcccttaacttatttcttttatt 7011674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 7026991 - 7027032
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  7026991 ggcttaattgatctgtcagtcccttaacttatttcttttatt 7027032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 18788678 - 18788637
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| |||||||||||||| ||||||||||||||    
T  18788678 ggcttaattgatatgccggtcccttaatttatttcttttatt 18788637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 27071020 - 27071061
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  27071020 ggcttaattgatctgccggtcatttaacttatttcttttatt 27071061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 27207293 - 27207252
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  27207293 ggcttaattgatctgccggtcatttaacttatttcttttatt 27207252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 29188148 - 29188107
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  29188148 ggcttaaatgatctgccggtcctttaacttatttcttttatt 29188107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 32519867 - 32519826
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  32519867 ggctaaattgatctgccggtcccttaatttatttcttttatt 32519826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 33254421 - 33254478
Alignment:
Q  280 gccacaccagattattactcatttcttaatagatatatacacctattatagtttaaag 337  Q
    |||||| ||||||||||  ||||| ||||||| ||||||||||||| |||||||||||    
T  33254421 gccacatcagattattatccattttttaataggtatatacacctataatagtttaaag 33254478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 37235813 - 37235854
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  37235813 ggcttaattggcctgccggtcccttaacttatttcttttatt 37235854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 19016815 - 19016777
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttctttt 378  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  19016815 ggcttaattgatctgtcggtcccttaatttatttctttt 19016777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 24653790 - 24653748
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||  |||||||||||||||| ||||||||||    
T  24653790 tggcttaattgatcctccggtcccttaacttaattcttttatt 24653748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 44748622 - 44748580
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||    
T  44748622 tggcttaatcgatctgccagtcccttaatttatttcttttatt 44748580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 373
Target Start/End: Complemental strand, 45400125 - 45400095
Alignment:
Q  343 ttaattgatctgccggtcccttaacttattt 373  Q
    |||||||||||||||||||||||||||||||    
T  45400125 ttaattgatctgccggtcccttaacttattt 45400095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 8661678 - 8661715
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttt 377  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  8661678 ggcttaattgatcagccggtcccttaacttaattcttt 8661715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 9392933 - 9392892
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| ||| ||| |||||||||||||||||||    
T  9392933 ggcttaattgatcttccgttcctttaacttatttcttttatt 9392892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 13749063 - 13749104
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||    
T  13749063 ggcttaattgatctggcggtcccataacttatttcttatatt 13749104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 18787149 - 18787186
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttctttt 378  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  18787149 gcttaattgatctgtcggtcccttaatttatttctttt 18787186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 44230427 - 44230468
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  44230427 ggcttaattgatctgccgatcccttagattatttcttttatt 44230468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 44420640 - 44420599
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| ||||| ||| |||||||||||||||||||    
T  44420640 ggcttaattgatatgccgatcctttaacttatttcttttatt 44420599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 9357894 - 9357858
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttt 377  Q
    |||||||||||||| || |||||||||||||||||||    
T  9357894 gcttaattgatctgtcgatcccttaacttatttcttt 9357858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 31938426 - 31938384
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31938426 tggcttaattgatctgccggtcccttaacttatttcttttatt 31938384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 10979293 - 10979252
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10979293 ggcttaattgatctgccggtcccttaacttatttcttttatt 10979252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 11348589 - 11348548
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11348589 ggcttaattgatctgccggtcccttaacttatttcttttatt 11348548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 31937035 - 31937076
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31937035 ggcttaattgatctgccggtcccttaacttatttcttttatt 31937076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 34014508 - 34014549
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34014508 ggcttaattgatctgccggtcccttaacttatttcttttatt 34014549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 35759348 - 35759308
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35759348 gcttaattgatctgccggtcccttaacttatttcttttatt 35759308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 43394170 - 43394131
Alignment:
Q  342 cttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43394170 cttaattgatctgccggtcccttaacttatttcttttatt 43394131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 2233424 - 2233382
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  2233424 tggcttaattgatctgtcggtcccttaacttatttcttttatt 2233382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 5691209 - 5691171
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5691209 ttaattgatctgccggtcccttaacttatttcttttatt 5691171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 37610841 - 37610803
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37610841 ttaattgatctgccggtcccttaacttatttcttttatt 37610803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 2232602 - 2232643
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  2232602 ggcttaattgatctgccgatcccttaacttatttcttttatt 2232643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 17116202 - 17116243
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  17116202 ggcttaattgatctgccgatcccttaacttatttcttttatt 17116243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 17117517 - 17117476
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  17117517 ggcttaattgatctgtcggtcccttaacttatttcttttatt 17117476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 21727910 - 21727951
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  21727910 ggcttaattgatctgccggtcccataacttatttcttttatt 21727951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 23073492 - 23073451
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  23073492 ggcttaattgatctgccggtcctttaacttatttcttttatt 23073451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 24376546 - 24376505
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  24376546 ggcttaattgatctgccggtcctttaacttatttcttttatt 24376505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 28777805 - 28777764
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  28777805 ggcttaattgatctgccggtcccttaatttatttcttttatt 28777764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 53101891 - 53101850
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  53101891 ggcttaattgatctgccggtcccttaagttatttcttttatt 53101850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 54354509 - 54354468
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  54354509 ggcttaattgatctgccggtcccttaacctatttcttttatt 54354468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 37609322 - 37609362
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  37609322 gcttaattgatctgccggtcctttaacttatttcttttatt 37609362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 53766083 - 53766043
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  53766083 gcttaattgatctgcgggtcccttaacttatttcttttatt 53766043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 15290604 - 15290566
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  15290604 ttaattgatctgtcggtcccttaacttatttcttttatt 15290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 46902334 - 46902372
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  46902334 ttaattgatctgtcggtcccttaacttatttcttttatt 46902372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 50881228 - 50881186
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  50881228 tggcttaattgatgtgtcggtcccttaacttatttcttttatt 50881186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 53178700 - 53178742
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  53178700 tggcttaattgatctgccgatcccttaacttattttttttatt 53178742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 55209785 - 55209823
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  55209785 ttaattgatctaccggtcccttaacttatttcttttatt 55209823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 23091191 - 23091232
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  23091191 ggcttaattgatctgccggtcttttaacttatttcttttatt 23091232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 35758064 - 35758105
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  35758064 ggcttaatcaatctgccggtcccttaacttatttcttttatt 35758105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 43392630 - 43392667
Alignment:
Q  344 taattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  43392630 taattgatctgtcggtcccttaacttatttcttttatt 43392667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 54353023 - 54353064
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  54353023 ggcttaattgatctgacggtcctttaacttatttcttttatt 54353064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 11346813 - 11346853
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  11346813 gcttaattgatctgtcggtcccttaatttatttcttttatt 11346853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 47429628 - 47429668
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  47429628 gcttaattgatctgcatgtcccttaacttatttcttttatt 47429668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 44116806 - 44116763
Alignment:
Q  338 atggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||  |||||||||||||||| ||||||||||    
T  44116806 atggcttaattgatcctccggtcccttaacttaattcttttatt 44116763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 52525475 - 52525436
Alignment:
Q  342 cttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  52525475 cttaattgatttgtcggtcccttaacttatttcttttatt 52525436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 46903743 - 46903701
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||  | ||||||||||||||||||||||||    
T  46903743 tggcttaattgatctttcagtcccttaacttatttcttttatt 46903701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 377
Target Start/End: Original strand, 52521930 - 52521964
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttt 377  Q
    ||||||||||||| |||||||||||||||||||||    
T  52521930 ttaattgatctgctggtcccttaacttatttcttt 52521964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 5689725 - 5689766
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| || ||||||| |||||||||||||||    
T  5689725 ggcttaattgatctgtcgctcccttagcttatttcttttatt 5689766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 17742411 - 17742370
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||  |||||||| |||||||||||||||||||||||    
T  17742411 ggcttaatacatctgccgatcccttaacttatttcttttatt 17742370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 19043731 - 19043690
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||  |||||||| |||||||||||||||||||||||    
T  19043731 ggcttaatacatctgccgatcccttaacttatttcttttatt 19043690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 34015886 - 34015845
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| || ||||||||||| ||||||||||||||    
T  34015886 ggcttaattgatttgtcggtcccttaagttatttcttttatt 34015845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 46986208 - 46986167
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| |||||| ||||||| ||||||||||||||    
T  46986208 ggcttaattgatttgccggccccttaatttatttcttttatt 46986167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 48444483 - 48444520
Alignment:
Q  177 gacttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  48444483 gacttatttttcttcaaaatataaaaccttcctcattt 48444520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 27749107 - 27749147
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  27749107 gcttaattgatctaccggttccttaacttatgtcttttatt 27749147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 35283068 - 35283100
Alignment:
Q  182 atttttcatcaaaatataaaaccctcctcattt 214  Q
    ||||||| |||||||||||||||||||||||||    
T  35283068 atttttcttcaaaatataaaaccctcctcattt 35283100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 53180920 - 53180888
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttattt 373  Q
    ||||||||||| |||||||||||||||||||||    
T  53180920 gcttaattgatttgccggtcccttaacttattt 53180888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 1719 - 1678
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1719 ggcttaattgatctgccggtcccttaacttatttcttttatt 1678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 134 - 175
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  134 ggcttaattgatctgccagtcccttaacttatttcttttatt 175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 31033 - 31074
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31033 ggcttaattgatctgccggtcccttaacttatttcttttatt 31074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 35404 - 35362
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  35404 tggcttaattgatctggcggtcccttaacttatttcttttatt 35362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 83779 - 83738
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  83779 ggcttaattgatctgccggtcccttaacttatttcttttatt 83738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 79408 - 79450
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  79408 tggcttaattgatctggcggtcccttaacttatttcttttatt 79450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 10804313 - 10804272
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10804313 ggcttaattgatctgccggtcccttaacttatttcttttatt 10804272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 10802882 - 10802930
Alignment:
Q  333 taaagatggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  10802882 taaatatggcttaattgatctgccgatcccttaacttatttcttttatt 10802930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 22624428 - 22624389
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttctttta 379  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22624428 ggcttaattgatctgccggtcccttaacttatttctttta 22624389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 38032544 - 38032497
Alignment:
Q  334 aaagatggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  38032544 aaagttggcttaattgatctgccggtcccttaatttatttcttttatt 38032497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 17357978 - 17357940
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17357978 ttaattgatctgccggtcccttaacttatttcttttatt 17357940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 7261661 - 7261620
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  7261661 ggcttaattgatctaccggtcccttaacttatttcttttatt 7261620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 17356361 - 17356402
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  17356361 ggcttaattgatctgtcggtcccttaacttatttcttttatt 17356402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 18091580 - 18091621
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  18091580 ggcttaattgatctgccgatcccttaacttatttcttttatt 18091621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 22621867 - 22621908
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  22621867 ggcttaattgatctgccagtcccttaacttatttcttttatt 22621908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 34121299 - 34121340
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  34121299 ggcttaattgatctgccggtcccttaatttatttcttttatt 34121340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 34122920 - 34122879
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  34122920 ggcttaattgatctgtcggtcccttaacttatttcttttatt 34122879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 38031168 - 38031209
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  38031168 ggcttaattgatctgccggtcccttaatttatttcttttatt 38031209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 46672871 - 46672814
Alignment:
Q  280 gccacaccagattattactcatttcttaatagatatatacacctattatagtttaaag 337  Q
    ||||||||||||||||||  |||| |||||||| |||||||||||| |||||||||||    
T  46672871 gccacaccagattattacctattttttaatagacatatacacctataatagtttaaag 46672814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 48463102 - 48463061
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  48463102 ggcttaattgatctgctggtcccttaacttatttcttttatt 48463061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 52430709 - 52430621
Alignment:
Q  130 aaggagtaagtg-aaaaaatagaagacgttgaaaggaggct-tttcgaggacttatttttcatcaaaatataaaaccctcctcatttag 216  Q
    |||||||||||| |||||||| | ||| ||| |||||||   ||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  52430709 aaggagtaagtggaaaaaatataggacattggaaggagggactttagaggacttatttttcttcaaaatataaaactctcctcatttag 52430621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 4442086 - 4442047
Alignment:
Q  175 aggacttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  4442086 aggacttatttttcttcaaaatataaaaccctcctcattt 4442047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 8814135 - 8814176
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  8814135 ggcttaattgatctatcggtcccttaacttatttcttttatt 8814176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 8815475 - 8815434
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  8815475 ggcttaattgatttgccggtccgttaacttatttcttttatt 8815434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 21442999 - 21443036
Alignment:
Q  177 gacttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||||||||||| |||||||||||||||||||||||||    
T  21442999 gacttatttttcttcaaaatataaaaccctcctcattt 21443036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 35191817 - 35191858
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  35191817 ggcttaattgattcgccggtcccttaacttatttcttttatt 35191858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 48080270 - 48080311
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  48080270 ggcttaattgatctgtcggtcacttaacttatttcttttatt 48080311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 48081443 - 48081404
Alignment:
Q  342 cttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  48081443 cttaattgatttgccggtcccttaacttattccttttatt 48081404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 56233722 - 56233765
Alignment:
Q  338 atggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||| |||||  ||||||||||||||||||||||||||    
T  56233722 atggcttaatagatctatcggtcccttaacttatttcttttatt 56233765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 5574199 - 5574241
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||  |||||||||||||||| ||||||||||    
T  5574199 tggcttaattgatcctccggtcccttaacttaattcttttatt 5574241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 42650615 - 42650649
Alignment:
Q  180 ttatttttcatcaaaatataaaaccctcctcattt 214  Q
    ||||||||| |||||||||||||||||||||||||    
T  42650615 ttatttttcttcaaaatataaaaccctcctcattt 42650649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 46670047 - 46670013
Alignment:
Q  180 ttatttttcatcaaaatataaaaccctcctcattt 214  Q
    ||||||||| |||||||||||||||||||||||||    
T  46670047 ttatttttcttcaaaatataaaaccctcctcattt 46670013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 56235138 - 56235097
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| | ||||||||| ||||||||||||||    
T  56235138 ggcttaattgatctgtcagtcccttaatttatttcttttatt 56235097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 9119893 - 9119853
Alignment:
Q  174 gaggacttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||| |||||||||| |||||||||||||| ||||||||||    
T  9119893 gagggcttatttttcttcaaaatataaaactctcctcattt 9119853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 13985118 - 13985030
Alignment:
Q  130 aaggagtaagtgaaa-aaatagaagacgttgaaaggaggct-tttcgaggacttatttttcatcaaaatataaaaccctcctcatttag 216  Q
    ||||||||||||||| ||||||| ||| |||  ||||||   ||| |||| |||||||||| | |||||||||||||||| ||||||||    
T  13985118 aaggagtaagtgaaataaatagaggacattgggaggaggaactttggagggcttatttttctttaaaatataaaaccctcttcatttag 13985030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 23758088 - 23758048
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||| | |||| ||||||||||||||    
T  23758088 gcttaattgatctgccggttctttaatttatttcttttatt 23758048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 23833988 - 23833947
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23833988 ggcttaattgatctgccggtcccttaacttatttcttttatt 23833947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 27891106 - 27891147
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27891106 ggcttaattgatctgccggtcccttaacttatttcttttatt 27891147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 27892454 - 27892413
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27892454 ggcttaattgatctgccggtcccttaacttatttcttttatt 27892413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 16604307 - 16604266
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  16604307 ggcttaattgatctaccggtcccttaacttatttcttttatt 16604266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 37622865 - 37622922
Alignment:
Q  280 gccacaccagattattactcatttcttaatagatatatacacctattatagtttaaag 337  Q
    |||||||||||||||||| ||||| ||||||| ||||||| ||||| |||||||||||    
T  37622865 gccacaccagattattacccattttttaataggtatatactcctataatagtttaaag 37622922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 16492770 - 16492826
Alignment:
Q  280 gccacaccagattattactcatttctt-aatagatatatacacctattatagtttaa 335  Q
    |||||||||||||||||| ||||| || ||||||||||||| |||||||||||||||    
T  16492770 gccacaccagattattacccatttttttaatagatatatacccctattatagtttaa 16492826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 16602723 - 16602766
Alignment:
Q  338 atggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  16602723 atggcttaattgatctgtcggtcccttaatttatttcttttatt 16602766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 379
Target Start/End: Complemental strand, 19577443 - 19577405
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttctttta 379  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  19577443 gcttaattgatctcccggtcccttaacttatttctttta 19577405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 43814520 - 43814562
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  43814520 tggcttaattgatttgtcggtcccttaacttatttcttttatt 43814562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 5034934 - 5034893
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  5034934 ggcttaattgatttgccggtcctttaacttatttcttttatt 5034893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 8975236 - 8975179
Alignment:
Q  280 gccacaccagattattactcatttcttaatagatatatacacctattatagtttaaag 337  Q
    ||||||||| |||||||| ||||| ||||||| |||||||| |||| |||||||||||    
T  8975236 gccacaccatattattacccattttttaataggtatatacatctataatagtttaaag 8975179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 30072174 - 30072129
Alignment:
Q  169 ttttcgaggacttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||| ||||||||||||||| ||||||||||||| |||||||||||    
T  30072174 ttttggaggacttatttttcttcaaaatataaaatcctcctcattt 30072129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 38244073 - 38244032
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  38244073 ggcttaattgatctgtcggtcccttaatttatttcttttatt 38244032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 23832966 - 23833009
Alignment:
Q  338 atggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| || |||||||||||||||||| |||||||    
T  23832966 atggcttaattgatttgtcggtcccttaacttatttattttatt 23833009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 31584868 - 31584833
Alignment:
Q  179 cttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||||||||| |||||||||||||||||||||||||    
T  31584868 cttatttttcttcaaaatataaaaccctcctcattt 31584833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 9087570 - 9087532
Alignment:
Q  176 ggacttatttttcatcaaaatataaaaccctcctcattt 214  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  9087570 ggacttaattttcttcaaaatataaaaccctcctcattt 9087532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 44954098 - 44954064
Alignment:
Q  180 ttatttttcatcaaaatataaaaccctcctcattt 214  Q
    ||||||||| |||||||||||||||||||||||||    
T  44954098 ttatttttcttcaaaatataaaaccctcctcattt 44954064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 15803161 - 15803198
Alignment:
Q  174 gaggacttatttttcatcaaaatataaaaccctcctca 211  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  15803161 gagggcttatttttcttcaaaatataaaaccctcctca 15803198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 1823410 - 1823369
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1823410 ggcttaattgatctgccggtcccttaacttatttcttttatt 1823369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 52086627 - 52086668
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  52086627 ggcttaattgatctgccggtcccttaacttatttcttttatt 52086668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 25181502 - 25181542
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25181502 gcttaattgatctgccggtcccttaacttatttcttttatt 25181542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 51468338 - 51468380
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  51468338 tggcttaattgatctgccggtcccttaacttattttttttatt 51468380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 7110226 - 7110267
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  7110226 ggcttaattgatctgccggtcccttaatttatttcttttatt 7110267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 18820874 - 18820833
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  18820874 ggcttaattgatctaccggtcccttaacttatttcttttatt 18820833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 51693147 - 51693188
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  51693147 ggcttaattgatctgtcggtcccttaacttatttcttttatt 51693188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 52759363 - 52759404
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  52759363 ggcttaattgatctgccgatcccttaacttatttcttttatt 52759404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 5488986 - 5488944
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  5488986 tggcttaattgatccgccgatcccttaacttatttcttttatt 5488944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 29702483 - 29702540
Alignment:
Q  280 gccacaccagattattactcatttcttaatagatatatacacctattatagtttaaag 337  Q
    |||||||||||||||||  ||||| ||||||| ||| ||||||||| |||||||||||    
T  29702483 gccacaccagattattatccattttttaataggtatgtacacctataatagtttaaag 29702540  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 52761654 - 52761613
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  52761654 ggcttaattgatatgccggttccttaacttatttcttttatt 52761613  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 47633041 - 47632984
Alignment:
Q  280 gccacaccagattattactcatttcttaatagatatatacacctattatagtttaaagat 339  Q
    |||||||||||||||| | ||||| |||||||||||||  ||||||||||||||| ||||    
T  47633041 gccacaccagattatttcccattttttaatagatatat--acctattatagtttagagat 47632984  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 17556645 - 17556680
Alignment:
Q  179 cttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||||||||| |||||||||||||||||||||||||    
T  17556645 cttatttttcttcaaaatataaaaccctcctcattt 17556680  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 24437035 - 24437000
Alignment:
Q  179 cttatttttcatcaaaatataaaaccctcctcattt 214  Q
    |||||||||| |||||||||||||||||||||||||    
T  24437035 cttatttttcttcaaaatataaaaccctcctcattt 24437000  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 346 - 381
Target Start/End: Complemental strand, 50485108 - 50485073
Alignment:
Q  346 attgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||||||||| ||||||    
T  50485108 attgatctgccggtcccttaacttatttcatttatt 50485073  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 381
Target Start/End: Original strand, 17244174 - 17244216
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||| | |||||||| |||||||||||||||||||||    
T  17244174 tggcttaattaacctgccggttccttaacttatttcttttatt 17244216  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 45229718 - 45229680
Alignment:
Q  343 ttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  45229718 ttaattgatctgtcggtcccttaatttatttcttttatt 45229680  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 17245782 - 17245741
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||| |||||| |||||| ||||||||||||||    
T  17245782 ggcttaattgatccgccggttccttaatttatttcttttatt 17245741  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 18819262 - 18819303
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||||||||||| |||||| |||||| |||||||    
T  18819262 ggcttaattgatctgccggttccttaaattattttttttatt 18819303  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 24633890 - 24633849
Alignment:
Q  254 ccaccataaggtatggtgtggttgcagccacaccagattatt 295  Q
    ||||||||||| |||||||||| || ||||||||||||||||    
T  24633890 ccaccataaggcatggtgtggtagctgccacaccagattatt 24633849  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 25586312 - 25586267
Alignment:
Q  252 acccaccataaggtatggtgtggttgcagccacaccagattattac 297  Q
    ||||||||||||| || ||||||||| |||||||||| ||||||||    
T  25586312 acccaccataaggcatagtgtggttgtagccacaccaaattattac 25586267  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 40187603 - 40187644
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| |||||| || ||||||||||||||||    
T  40187603 ggcttaattgatctgacggtcctttcacttatttcttttatt 40187644  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 47532961 - 47532998
Alignment:
Q  344 taattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  47532961 taattgatctgccggtcccttaagttattttttttatt 47532998  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 51469019 - 51468978
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||| | |||||||||||||||| |||||||    
T  51469019 ggcttaattgatctgtcagtcccttaacttattttttttatt 51468978  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 5488502 - 5488542
Alignment:
Q  341 gcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||  |||||||||| ||||||||||||||    
T  5488502 gcttaattgatctgttggtcccttaatttatttcttttatt 5488542  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 381
Target Start/End: Complemental strand, 25464 - 25422
Alignment:
Q  339 tggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  25464 tggcttaattgatctgccgctcccttaacttatttcttttatt 25422  T

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Target: scaffold0878 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 340 - 381
Target Start/End: Complemental strand, 3145 - 3104
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  3145 ggcttaattgatctgccagtcccttaacttatttcttttatt 3104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Original strand, 5005 - 5062
Alignment:
Q  280 gccacaccagattattactcatttcttaatagatatatacacctattatagtttaaag 337  Q
    ||||||| |||||||||| ||||| ||||||| ||||||| |||||||||||||||||    
T  5005 gccacactagattattacccattttttaataggtatatacccctattatagtttaaag 5062  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 104301 - 104342
Alignment:
Q  340 ggcttaattgatctgccggtcccttaacttatttcttttatt 381  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  104301 ggcttaattgatttgacggtcccttaacttatttcttttatt 104342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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