View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_low_17 (Length: 359)
Name: NF9240_low_17
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 37619279 - 37619637
Alignment:
| Q |
1 |
ataatctaaaaactgttcaaaaaatattttgagtggtttcctttaagaaaaatcgattttcgttttggttaacaatttcttgttggtttttcattgttgg |
100 |
Q |
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| T |
37619279 |
ataatctaaaaactgttcaaaaaatattttgagcggtttcttttaagaaaaatcgattttcgttttggttaacaatttgttgttggttttttattgttgg |
37619378 |
T |
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| Q |
101 |
aataggaatctatcaccaattataaatgattagaatgtttaatattgagaatacgaatgatgaactattttgatgcagaaaagtgaatgatttgagcata |
200 |
Q |
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| T |
37619379 |
aataggaatctatcaccaattataaatgattagaatgtttaatattgagaatacgaataatgaactattttgatgcagaaaagtgaatgatttgagcata |
37619478 |
T |
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| Q |
201 |
aaacgtgcctgcgaatgaactatcttgaaatttaaagtgcaaagaatgtaaaaaatacattgaaaatgtacggtgcataaagtaaaataaatgaaggtca |
300 |
Q |
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| T |
37619479 |
aaacgtgcctgcgaatgaactatcttgaaatttaaagtgcaaagaatctaaaaaatacattgaaaatgtacagtgcataaagtaaaataaatgaaggtca |
37619578 |
T |
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| Q |
301 |
actggcataaacttgaagtgcaagaaatgtatatgagtttaaaaagtaaattgctatgt |
359 |
Q |
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| T |
37619579 |
actggcataaacttgaagtgcaagaaatataaatgagtttaaaaagtaaattgctatgt |
37619637 |
T |
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