View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9240_low_18 (Length: 353)
Name: NF9240_low_18
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 1088825 - 1088514
Alignment:
| Q |
19 |
gcgaaaaccattggaactaatcaaaatggggaacaatactttggtgatgatagccctcatcaactctcactttatactttcaaattaaactcaggcaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088825 |
gcgaaaaccattggaactaatcaaaatggggaacaatactttggtgatgatagccctcatcaactctcactttatactttcaaattaaactcaggcaaaa |
1088726 |
T |
|
| Q |
119 |
tttaccacttctctgcatgttttcacatgttaacaggacttaaatgccgtttattattaacagctttcttcttaagaatggcttaaagcatacttgttca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088725 |
tttaccacttctctgcatgttttcacatgttaacaggacttaaatgccgtttattaataacagctttcttcttaagaatggcttaaagcatacttgttca |
1088626 |
T |
|
| Q |
219 |
tgagctgagttggttcattttccaattccttctcaagttcaacttgctcttgcaaatacttcttcagagccaaccgtttttcttcatgcattcttaagat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088625 |
tgagctgagttggttcattttccaattccttctcaagttcaacttgctcttgcaaatacttcttcagagccaaccgtttttcttcatgcattcttaagat |
1088526 |
T |
|
| Q |
319 |
attatctctcgc |
330 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1088525 |
attatctctcgc |
1088514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 22 - 328
Target Start/End: Complemental strand, 1082964 - 1082655
Alignment:
| Q |
22 |
aaaaccattggaactaatcaaaatggggaacaatactttggtgatgatagccctcatcaactctcactttatactttcaaattaaactcaggcaaaattt |
121 |
Q |
| |
|
||||| |||||||||| |||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
1082964 |
aaaactattggaactagtcaaaatgggctacgatactttggtgatgatagccctcatcaaccctcactttcaactttcaaattaaactctggcaaaattt |
1082865 |
T |
|
| Q |
122 |
accacttctctgcatgttttcacatgttaacaggacttaaatgccgtttattattaacagctttcttcttaagaatggcttaaagcatacttgttcatga |
221 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||| ||| || |||||||||| ||||||||||| |
|
|
| T |
1082864 |
accacttctctgcatgttttcaaatgttaacgggacttaaacaccgtttaatattaacagctttcttcttgagagtgacttaaagcatgcttgttcatga |
1082765 |
T |
|
| Q |
222 |
gctgagttggttcattttccaattccttctcaagttcaacttgctcttgcaa---atacttcttcagagccaaccgtttttcttcatgcattcttaagat |
318 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||| | | |||||||||||||||| ||||||| |||| || ||||||| |
|
|
| T |
1082764 |
gctgagttagttcattttccaattccttctcaagttcaacctgctcttgccactgcttcttcttcagagccaactgtttttcaccatgtgtttttaagat |
1082665 |
T |
|
| Q |
319 |
attatctctc |
328 |
Q |
| |
|
|||||||||| |
|
|
| T |
1082664 |
attatctctc |
1082655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University