View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_low_20 (Length: 350)
Name: NF9240_low_20
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 45 - 323
Target Start/End: Complemental strand, 30056822 - 30056545
Alignment:
| Q |
45 |
taactatttatttgttcttaattattttaattttgggatttgtaataataataacaggtagttgctgggcattttctgctgtgggtgcactggaaggtat |
144 |
Q |
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| T |
30056822 |
taactatttatttgttcttaattattt-aattttgtaatttgtaacaataattacaggtagttgctgggcattttctgctgtgggtgcactagaaggtat |
30056724 |
T |
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| Q |
145 |
ccaacaaataactagtggaaatttagtgtccctttcggaacaagaactcgtggatcgtgtcagaagtaatttgacaaatggatgcaacggtggttattcg |
244 |
Q |
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| T |
30056723 |
ccaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcgtgtcagaagtaattggacaaatggatgcaacggtggttatttg |
30056624 |
T |
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| Q |
245 |
actgatgcctttaaattcattttagataacaatggcattgccacagaagcaaattatccatacaggggagttaaaggaa |
323 |
Q |
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| T |
30056623 |
attgatgcttttgaattcgtcttagaaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaaggaa |
30056545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 105 - 323
Target Start/End: Original strand, 29746533 - 29746751
Alignment:
| Q |
105 |
gttgctgggcattttctgctgtgggtgcactggaaggtatccaacaaataactagtggaaatttagtgtccctttcggaacaagaactcgtggatcgtgt |
204 |
Q |
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| T |
29746533 |
gttgttgggcattttctacggtggctgcaatagaaggtatccaacaaataaccagtggaaatttagtctccttttcagagcaacaacttgtggattgtgt |
29746632 |
T |
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| Q |
205 |
cagaagtaatttgacaaatggatgcaacggtggttattcgactgatgcctttaaattcattttagataacaatggcattgccacagaagcaaattatcca |
304 |
Q |
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| T |
29746633 |
cgcaagtaattggaccaatggatgtaatggtggtaataagattgatgcttttaaattcaatttagaaaacggtggaattgccacagaagcaagttatcca |
29746732 |
T |
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| Q |
305 |
tacaggggagttaaaggaa |
323 |
Q |
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| T |
29746733 |
tacaagggagttaaaggaa |
29746751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 319
Target Start/End: Complemental strand, 29606599 - 29606417
Alignment:
| Q |
137 |
gaaggtatccaacaaataactagtggaaatttagtgtccctttcggaacaagaactcgtggatcgtgtcagaagtaatttgacaaatggatgcaacggtg |
236 |
Q |
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| T |
29606599 |
gaaggtatccaacaaataatcagtggaaatttagtctccttttcagagcaacaacttgtggattgtgtcacaagtaattggaccaatggatgtaatggtg |
29606500 |
T |
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| Q |
237 |
gttattcgactgatgcctttaaattcattttagataacaatggcattgccacagaagcaaattatccatacaggggagttaaa |
319 |
Q |
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| T |
29606499 |
gtaataagattgatgcttttaaattcattttagaaaacggtggaattgccacagaagcaagttatccatacaagggagttaaa |
29606417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 29733724 - 29733624
Alignment:
| Q |
80 |
ggatttgtaataataataacaggtagttgctgggcattttctgctgtgggtgcactggaaggtatccaacaaataactagtggaaatttagtgtcccttt |
179 |
Q |
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| T |
29733724 |
ggatttgtaacaacaataacaggtagttgctgggcattttctgctgtggctgcgatagaaggtatccaaaaaataactagtggaaatttagtttcccttt |
29733625 |
T |
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| Q |
180 |
c |
180 |
Q |
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| T |
29733624 |
c |
29733624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 29733555 - 29733496
Alignment:
| Q |
249 |
atgcctttaaattcattttagataacaatggcattgccacagaagcaaattatccataca |
308 |
Q |
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| T |
29733555 |
atgcttttaaattcattttagaaaatggtggaattgcgacagaagcaaattatccataca |
29733496 |
T |
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