View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_low_23 (Length: 312)
Name: NF9240_low_23
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 37208849 - 37208756
Alignment:
| Q |
136 |
ctacaatttaacaattcatgacaaacaagtatccaaagcaagccataaatagaatcacaatttgacaaaccaataaaaagtcagcaagtgaaga |
229 |
Q |
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| T |
37208849 |
ctacaatttaacaattcatgacaaacaagtatccaaagcaagccataaatagaatcacaatttgacaaaccaataaaaagtcagcaagtgaaga |
37208756 |
T |
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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 37208966 - 37208917
Alignment:
| Q |
19 |
caagcatcaaaagtgtagttagctttgaaagaacactaccttggaaccat |
68 |
Q |
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| T |
37208966 |
caagcatcaaaagtatagttggctttgaaagaacactaccttggaaccat |
37208917 |
T |
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