View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_low_25 (Length: 305)
Name: NF9240_low_25
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 19339660 - 19339964
Alignment:
| Q |
1 |
tgcatgaaaaacagtaacaccacttctcacatctgcaaaacctctactgtttcacccccaatgcctcaaaaaactctactattaccaaaatcaacaccaa |
100 |
Q |
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| T |
19339660 |
tgcatgaaaaacagtaacaccacttctcacaactgcaaaacctctactgtttcaccctcaatgcctcaaaaaactctactattaccaaaatcaacaccaa |
19339759 |
T |
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| Q |
101 |
aacaacttcccaatattacaaatcaacccagaaagaaaccaaaaatcaaagttttagcttttttccctttaagaaccccaggaattaggaaaaagcaaaa |
200 |
Q |
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| T |
19339760 |
aacaacttcccaatattacaaatcaacccagaaagaaaccaaaaatcaaagttttagcttttttccctttaagaaccccaggaattaggaaaaagcaaaa |
19339859 |
T |
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| Q |
201 |
actatgcgaatgaagaaaaatcaacgacccataagaaactaaaccgagaatcagtgacccatttggtcaaaacgaagaaaaatcaaaactttagcaaaga |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19339860 |
actatgcgaatgaagaaaaatcaacgacccagaagaaactaaaccgagaatcagtgacccatttggtcaaaacgaagaaaaatcaaaactttagcaaaga |
19339959 |
T |
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| Q |
301 |
aatta |
305 |
Q |
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||||| |
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| T |
19339960 |
aatta |
19339964 |
T |
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