View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9240_low_3 (Length: 909)
Name: NF9240_low_3
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 377 - 895
Target Start/End: Original strand, 8985553 - 8986079
Alignment:
| Q |
377 |
aaaaatcacgtttgattttaaaaaagtcttgaaattaaacttgtttcataatttaaaatacttagaatgtaaataatctgcttcttgagttggaacaagg |
476 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8985553 |
aaaaatcacgtttgattttaaaaatgtcttgaaattaaacttgtttcataaattaaaatacttagaatgtaaataatctgcttcttgagttggaacaagg |
8985652 |
T |
|
| Q |
477 |
gggatatagcgatatagcagcgtgtggaagcctttttcgtaatttagatggacggtagatcaaaggttacataaaaaagattggcttgtttgatgccnnn |
576 |
Q |
| |
|
|| | ||||||||||||||||||||| ||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8985653 |
ggaa-atagcgatatagcagcgtgtg-aagccttttacgtaatttagatgggcgatggatcaaaggttacataaaaaagattggcttgtttgatgccctt |
8985750 |
T |
|
| Q |
577 |
nnnn-ctgtatcctttagagtatatggaagcaaagaaataatatgatttgga--gtgataaagttaatgaaaccaatgtggtggacagagcaaaacatat |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8985751 |
tttttctgtatcctttagagtatatggaagcaaagaaataatatgatttggaaagtgataaagttaatgaagccaatgtggtggacagagcaaaacatat |
8985850 |
T |
|
| Q |
674 |
gcttgaccaatggttggcaactcaaatgg-----aattcagtgaatgcacctataatacatgttggaagggcaaaacggttgaagccacaataagggata |
768 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
8985851 |
gcttgaccagtggttggcaactcaaatggtacacaattcagtgaatgcacctataatacatgttggaagggcaaaacggttgaagccacaacaaatgata |
8985950 |
T |
|
| Q |
769 |
tttaaatgtaatgtagatgcatctttttccaaagaggataa-aaagttgggatcggtatgtgcattcc-agattatacatgaacttttgttttggctaga |
866 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
8985951 |
tttaaatgtaatgtagatgcatcctttttcaaagaggataacaaagttgggatcggtatgtgcattccaagattatacataaacttttgctttggctaga |
8986050 |
T |
|
| Q |
867 |
acataatggtttagtccaatctgtgatgt |
895 |
Q |
| |
|
||||||||||||||| |||| |||||||| |
|
|
| T |
8986051 |
acataatggtttagttcaatttgtgatgt |
8986079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 34 - 382
Target Start/End: Original strand, 8979514 - 8979862
Alignment:
| Q |
34 |
ctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttggaaaaggaagatattgataccga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8979514 |
ctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttagaaaaggaagatattgataccga |
8979613 |
T |
|
| Q |
134 |
aatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccctatttagatgtatccctttatgttaactttgttagtttca |
233 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8979614 |
aatgttgccagggatcactcaacacaagaagaatcctctttaccttgttcccaatatccctatttagatgtatccctttatgttaactttgttagtttca |
8979713 |
T |
|
| Q |
234 |
tgtttaatatactgtttattaagctttttatgttgctctactatttgaatttgaaaaaagagaaaatcagttactttgaatttgtaatacaagaagaatc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8979714 |
tgtttaatatactgtttattaagctttttatgttgctctactatttgaatttgaaaaaagagaaaatcagttactttgaatttgtaatacaagaagaatc |
8979813 |
T |
|
| Q |
334 |
ctctttgaatttgtaaagtggtcgaatgtaaatgatttgaataaaaaat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8979814 |
atctttgaatttgtaaagtggtcgaatgtaaatgatttgaataaaaaat |
8979862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 9000112 - 8999929
Alignment:
| Q |
18 |
atttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttggaaaagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || | ||||| |
|
|
| T |
9000112 |
atttgcccaggtatgcctatggcagttgcctcattggaacttatccttgccaatcttctttattcatttgattggaaattgccacatggaacagtaaagg |
9000013 |
T |
|
| Q |
118 |
aagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccctatttaga |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||| |||| |
|
|
| T |
9000012 |
aagatattgatactgaaatgttgccagggatcactcaacacaagaagaatcctctttgccttgttgccaagatccctatgtaga |
8999929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 36 - 264
Target Start/End: Original strand, 9031030 - 9031258
Alignment:
| Q |
36 |
atggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttggaaaaggaagatattgataccgaaa |
135 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| |||||||| ||||| |||||||||||||| ||| | || |||| |||||||||||||||||| || |
|
|
| T |
9031030 |
atggcagttgcctcattgaaacttatccttgccaatcttctttattcatttgattggaaattaccagatgggttggtaaaggaagatattgatacatcaa |
9031129 |
T |
|
| Q |
136 |
tgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccctatttagatgtatccctttat-gttaactttgttagtttcat |
234 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||| ||||||| | || |||||||| |||||| |||||||||| || ||| |||| ||||| | |
|
|
| T |
9031130 |
tgctgccagggatcactcaacacaagaagaatcctctttgccttgttgctaagatccctatgtagatgcatccctttatagtatactatgttggtttctt |
9031229 |
T |
|
| Q |
235 |
gtttaatatactgtttattaagctttttat |
264 |
Q |
| |
|
||||| |||| ||||||| ||||||||||| |
|
|
| T |
9031230 |
gtttattata-tgtttatcaagctttttat |
9031258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 8929351 - 8929167
Alignment:
| Q |
18 |
atttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttggaaaagg |
117 |
Q |
| |
|
|||||||||||||| || | ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||| ||||| || |||| ||||| |
|
|
| T |
8929351 |
atttgcccaggtatttctgttgcagttgcatcgttggaacttacccttgctaatcttctctattcatttgattgggaattaccacatgggttggtaaagg |
8929252 |
T |
|
| Q |
118 |
aagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccctatttagat |
202 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| | |||||| |||| ||||||| ||||| |
|
|
| T |
8929251 |
aagatattgatacagaaatgttgccagggatcactcaacacaagaagaatcatctctgccttgtagccaaagtccctatgtagat |
8929167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 8955162 - 8955376
Alignment:
| Q |
18 |
atttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttggaaaagg |
117 |
Q |
| |
|
|||||||| ||||| ||||||||| | || || ||||||||||||||||| |||||||||||||| |||||||||| || ||| | || |||| ||| | |
|
|
| T |
8955162 |
atttgccccggtatacctatggcaatcgcctcgttggaacttatccttgcaaatcttctctattcatttgattggagcttaccagatgggttggtaaaag |
8955261 |
T |
|
| Q |
118 |
aagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccctatttagatgtatccctttatgtt |
217 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| | |||| ||||||| ||||| |||||||||| || |
|
|
| T |
8955262 |
aagatgttgatacagaaatgctgccagggatcactcaacacaagaagaatcctctttaccttatagccaagatccctaagtagatacatccctttatatt |
8955361 |
T |
|
| Q |
218 |
aactttgttagtttc |
232 |
Q |
| |
|
|||| |||| ||||| |
|
|
| T |
8955362 |
aactatgttggtttc |
8955376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 8966202 - 8965957
Alignment:
| Q |
18 |
atttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttggaaaagg |
117 |
Q |
| |
|
||||| |||||||| |||||| |||||||||| | ||||| ||||||||||||||||| ||||||||||||||||| || ||||| || |||| ||||| |
|
|
| T |
8966202 |
atttgtccaggtatatctatgggagttgcatcagtagaactgatccttgctaatcttctttattcttttgattggaagttaccacatggattggtaaagg |
8966103 |
T |
|
| Q |
118 |
aagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcctctttaccttgttcccaatatccctatttagatgtatccctttatgtt |
217 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||| | || ||| |||| || |||| ||||| |||||||||| | |
|
|
| T |
8966102 |
aagatattgatactgaaacgttgcctgggatcactcaacacaagaagaatcctctctgtctggttgccaagattactatgtagattcatccctttatttc |
8966003 |
T |
|
| Q |
218 |
aactttgttagtttcatgtttaatatac--tgtttattaagcttttt |
262 |
Q |
| |
|
|||| | |||||||| ||||| |||| | |||||||||| |||||| |
|
|
| T |
8966002 |
aactct-ttagtttcttgtttgatatgctatgtttattaaacttttt |
8965957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 8900524 - 8900375
Alignment:
| Q |
18 |
atttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttggaaaagg |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| || || ||||||||| |||| ||| | ||| ||| ||||| |
|
|
| T |
8900524 |
atttgcccaggtatgtctatggcagttgcatcattggaagttatccttgcaaatcttctatactcctttgattgggaattaccagatggtatggtaaagg |
8900425 |
T |
|
| Q |
118 |
aagatattgataccgaaatgttgccagggatcactcagcacaagaagaat |
167 |
Q |
| |
|
||||||||||||| |||| || |||||| ||||||| |||||||||||| |
|
|
| T |
8900424 |
aagatattgatactgaaaggtggccaggactcactcaacacaagaagaat |
8900375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 9014008 - 9014181
Alignment:
| Q |
71 |
tcttctctattcttttgattggaaattgccacaaggtttggaaaaggaagatattgataccgaaatgttgccagggatcactcagcacaagaagaatcct |
170 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9014008 |
tcttctttattcatttaattggaaattgccacatggaacactaaagaaagatattgatactgaaatgttgccagggatcactcaacacaagaagaatcct |
9014107 |
T |
|
| Q |
171 |
ctttaccttgttcccaatatccctatttagatgtat-ccctttatgttaactttgttagtttcatgtttaatat |
243 |
Q |
| |
|
|||| ||||||| |||| |||||||| |||| | || ||||||| | ||| |||| |||||||||||||||| |
|
|
| T |
9014108 |
ctttgccttgttgccaagatccctatgtagacgcatgacctttatcgtgactatgttggtttcatgtttaatat |
9014181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 8914429 - 8914280
Alignment:
| Q |
18 |
atttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttggaaaagg |
117 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| | |||||||||||| | |||||||| ||||| ||||||||| |||| ||| | || || ||||| |
|
|
| T |
8914429 |
atttgtccaggtatgtctatggcagttgcatcactcgaacttatcctttccaatcttctatattcctttgattgggaattaccagatggcctgataaagg |
8914330 |
T |
|
| Q |
118 |
aagatattgataccgaaatgttgccagggatcactcagcacaagaagaat |
167 |
Q |
| |
|
||||||||||||| |||| || |||||| ||||||| |||||||||||| |
|
|
| T |
8914329 |
aagatattgatactgaaaggtggccaggactcactcaacacaagaagaat |
8914280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 20073983 - 20073834
Alignment:
| Q |
18 |
atttgcccaggtatgcctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttggaaaagg |
117 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| | |||||||||||||| |||||||| ||||| ||||||||| |||| ||| | ||| | | ||||| |
|
|
| T |
20073983 |
atttgtccaggtatgtctatggcagttgcatcactcgaacttatccttgcaaatcttctatattcctttgattgggaattaccagatggtctagtaaagg |
20073884 |
T |
|
| Q |
118 |
aagatattgataccgaaatgttgccagggatcactcagcacaagaagaat |
167 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
20073883 |
aagatattgatactgaaaggttgccaggactcactcagcacaaaaagaat |
20073834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 9400205 - 9400060
Alignment:
| Q |
34 |
ctatggcagttgcatcattggaacttatccttgctaatcttctctattcttttgattggaaattgccacaaggtttggaaaaggaagatattgataccga |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||| |||||||||| || |||| ||||||||| ||||| || |
|
|
| T |
9400205 |
ctatggcagttgcatcattggaacttatccttgccaatatcctctattcctttgattgggaattgccacatgggttggttaaggaagatgttgattttga |
9400106 |
T |
|
| Q |
134 |
aatgttgccagggatcactcagcacaagaagaatcctctttacctt |
179 |
Q |
| |
|
|| |||||||||||| |||| ||||||||||| | ||||| |||| |
|
|
| T |
9400105 |
aaggttgccagggattgctcaacacaagaagaaccatctttgcctt |
9400060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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