View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_low_35 (Length: 217)
Name: NF9240_low_35
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 29226203 - 29226015
Alignment:
| Q |
13 |
aacctgtgcacacatggcacaattatttgtagtaaacaatatttagctattacatatcattcttagattatcaatttattcaattgaagcttatttgata |
112 |
Q |
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| T |
29226203 |
aacctgtgcacacatggcacaattatttgtagtgaacaatatttagctattgcatatcattcttagattatcaatttattcaattgaagcttatttgata |
29226104 |
T |
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| Q |
113 |
tttaggtgatttgtcaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatggcaaacaagt |
201 |
Q |
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| T |
29226103 |
tttaggtgatttgtcaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatggcaaacaagt |
29226015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 29241372 - 29241191
Alignment:
| Q |
17 |
tgtgcacacatggcacaattatttgtagtaaacaatatttagctattacatatcattcttagattatcaatttattcaattgaagcttatttgatattta |
116 |
Q |
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| T |
29241372 |
tgtgcacacatggcacaattattcatagtaaactatatttagctg---catatcttttttaaattatcaatttattcaattgaaacttgtttgatattta |
29241276 |
T |
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| Q |
117 |
ggtgatttgtcaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatggcaaacaagt |
201 |
Q |
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| T |
29241275 |
gatgatttgtcaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatggcaaacaagt |
29241191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 29230788 - 29230679
Alignment:
| Q |
92 |
tcaattgaagcttatttgatatttaggtgatttgtcaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatg |
191 |
Q |
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| T |
29230788 |
tcaattgaaacttatttgatatttaggtgttctgttaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatg |
29230689 |
T |
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| Q |
192 |
gcaaacaagt |
201 |
Q |
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|||||||||| |
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| T |
29230688 |
gcaaacaagt |
29230679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 29251558 - 29251470
Alignment:
| Q |
111 |
tatttaggtgatttgtcaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatggcaaacaa |
199 |
Q |
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| T |
29251558 |
tatttaggtgatttgtcaggattaaagagaccatagtgttgttcagttgttgcaccagtcttctgattttcatcaaacatggcaaacaa |
29251470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 29253045 - 29253119
Alignment:
| Q |
127 |
caggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacatggcaaacaagt |
201 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
29253045 |
caggattgaagagaccaaaatgttgttcagttgctgcaccaggcttctgattttcatcaaacatagcaaacaagt |
29253119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 29218807 - 29218702
Alignment:
| Q |
91 |
ttcaattgaagcttatttgatatttaggtgatttgtcaggattaaagagaccaaaatgttgttcagttgctgcaccagtcttctgattttcatcaaacat |
190 |
Q |
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|||||||||| || ||||||||||||||||||||||| || ||||||||||||| ||| | ||| || | | ||| | ||||||||||||||| ||||| |
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| T |
29218807 |
ttcaattgaaactaatttgatatttaggtgatttgtcgggtctaaagagaccaaagtgtcgctcaatttcagaacccggcttctgattttcatcgaacat |
29218708 |
T |
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| Q |
191 |
ggcaaa |
196 |
Q |
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||||| |
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| T |
29218707 |
agcaaa |
29218702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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