View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_low_37 (Length: 214)
Name: NF9240_low_37
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 32412091 - 32412279
Alignment:
| Q |
4 |
gtgtatatcatcgtgcaaaacaaggcataagggctgccggaagaaaatgtctaacaacagtagttttaatannnnnnnngttaaatagtttagggtttag |
103 |
Q |
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| T |
32412091 |
gtgtacatcatcgtgcaaaacaaggcacaagggctgccggaagaaaatgtcta-caacagtagttataatattttttt-gttaaatagtttagggtttag |
32412188 |
T |
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| Q |
104 |
atatttacctcttaagctaaatcagaaatttgagttttaaaccctaacttatgcatagtataacttttttgtcaagtagcatagtgcctaa |
194 |
Q |
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||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
32412189 |
atatttaccccttaagctgaatcggaaatttgagttttaaaccctaacttatgcatattataatttttttgtcaagtagcatagtgcctaa |
32412279 |
T |
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