View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_low_4 (Length: 753)
Name: NF9240_low_4
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_4 |
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| [»] scaffold0001 (2 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 58 - 543
Target Start/End: Original strand, 415698 - 416183
Alignment:
| Q |
58 |
attctttcaaatttgaacaaacaatttatgattgtttcatttgattttcttagagaccattcgtgtgtcactgtgatcattacccattcatgaattgatt |
157 |
Q |
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| T |
415698 |
attctttcaaatttgaacaaacaatttatgatagtttcatttgattttcttagagaccgttcgtgtgtcactgtcatcattactcattcatgaattgatt |
415797 |
T |
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| Q |
158 |
atgttgtattatggagtcattgaaatagccgcaacaatggctttacttgtaagcaataaaatttggattcaaaattaggattgcagaatagttttttagt |
257 |
Q |
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| T |
415798 |
atgttgtattatggagtcattgaaatagccgcaacaatggctttacttgtaagcaataaaatttggattcaaaattaggattgcagaatagttttttagt |
415897 |
T |
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| Q |
258 |
ttcatagtatttgaatgcctttaattttggatttagaaattaatatttttgtgagttctaatccaacgtttcttgtatcatgctattataagctctatta |
357 |
Q |
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| T |
415898 |
ttcataggatttgaatgcctttaattttggatttagaaattaatatttttgtgagttctaatccaacgtttcttgtatcatgctattataagctctatta |
415997 |
T |
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| Q |
358 |
ttagaaaatttaacagtgttttaacatatctttgtcgcttgcaggataatgtccggtgtatggttcgaaaatttcttgaatttaccatcaataattacaa |
457 |
Q |
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| T |
415998 |
ttagaaaatttaacagcgttttaacatatctttgtcgcttgcaggataatgtccggtgtatggttcgaaaatttcttgaatttaccatcattaattacaa |
416097 |
T |
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| Q |
458 |
gaactgtacagaaccaatatcaatactacaggattttcgattatctctggtaagaatattttcttgattttccttctatttcgtcc |
543 |
Q |
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| T |
416098 |
gaactgtacagaacctatatcaatactacaggattttcaattatctctggtaagaatattttcttgatttttcttctatttcgtcc |
416183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 634 - 740
Target Start/End: Original strand, 416273 - 416379
Alignment:
| Q |
634 |
cccttgtttatatgtgactgttggtattccaaggtcagatgattgtaattgtggtcatgctttcttgattgttttcacttttcatgatatgtaagagttg |
733 |
Q |
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| T |
416273 |
cccttgtttatatgtgactgttggtattccaaggtcagatgattgtaattgtggtcatgctttcttgattgttttcagttttcatgatatgtaagagttg |
416372 |
T |
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| Q |
734 |
tttgtga |
740 |
Q |
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| T |
416373 |
tttgtga |
416379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 373 - 521
Target Start/End: Original strand, 21573294 - 21573443
Alignment:
| Q |
373 |
gtgttttaacatatctttgtcgc-ttgcaggataatgtccggtgtatggttcgaaaatttcttgaatttaccatcaataattacaagaactgtacagaac |
471 |
Q |
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| T |
21573294 |
gtgttttaacatatctttgtgacattgcaggataatgtcaagagtatggctggaaaatttcttgaatatacgatgaacaattacaagatctgtacagaac |
21573393 |
T |
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| Q |
472 |
caatatcaatactacaggattttcgattatctctggtaagaatattttct |
521 |
Q |
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| T |
21573394 |
cagtatcaatattacaggcctttcaattatctctggtcagaatattttct |
21573443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 21572992 - 21573051
Alignment:
| Q |
175 |
cattgaaatagccgcaacaatggctttacttgtaagcaataaaatttggattcaaaatta |
234 |
Q |
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| T |
21572992 |
cattgaaatggccgcaataatggctatacttgtaagcaataaaacctggattcaagatta |
21573051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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