View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_low_6 (Length: 663)
Name: NF9240_low_6
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 13 - 663
Target Start/End: Original strand, 8870390 - 8871034
Alignment:
| Q |
13 |
cacagacagagattttaacatgccatcaatatgatttgatcctaatggattgtcaggtatgaatgaactagaataaaatatatattggtgacatcataat |
112 |
Q |
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| T |
8870390 |
cacagacagagattttaacatgccatcaatatgatttgatcctaatggattgtcaggtatgaatgaactagaataaaatatatattgatgacatcataat |
8870489 |
T |
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| Q |
113 |
ttaatagctttaggatttgaattgatttgaattgagcttatgtactgccataccataaccacttgtgaatatcaggttaaatatatatatactaatgctt |
212 |
Q |
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| T |
8870490 |
ttaatagctttaggatttgaattgattt-atttgagcttatgtactgccata-----agcacttgtgaatatcaggttaaatatatatatactaatgctt |
8870583 |
T |
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| Q |
213 |
tatctgtgtttgtggaaaattagatgccaaagatggatggatatgaggcaacaaaagaaataaggaaatcagaggaaggaacaggaaaacacattccaat |
312 |
Q |
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| T |
8870584 |
tatctgtgtttgtggaaaattagatgccaaagatggatggatatgaggcaacaaaagaaataaggaaatcagaggaaggaacaggaaaacacattccaat |
8870683 |
T |
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| Q |
313 |
tgttgctctaacagcccatgcaatgtcttgtgatgaagccaaatgtcttaaggttggcatggatgcttacttaacaaagccaattgacttcaagcttatg |
412 |
Q |
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| T |
8870684 |
tgttgctctaacagcccatgcaatgtcttgtgatgaagccaaatgccttaaggttggcatggatgcttacttaacaaagccaattgacttcaagcttatg |
8870783 |
T |
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| Q |
413 |
gtctcaaccattctctcactcactaaaccaacaacctagaaatgtttagagttttaccacatagttgtaatctgaaatatagttcaatttttcttactga |
512 |
Q |
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| T |
8870784 |
gtctcaaccattctctcactcactaaaccaacaaactagaaatgtttagagttttaccacatagttgtaatctgaaatatagttcaatttttcttactga |
8870883 |
T |
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| Q |
513 |
gctcactagtatcagtaaacggatgtagtgttatttatgtgtgcatatgatagcactgtgtgcttgattagatagatctattggttnnnnnnnncctttg |
612 |
Q |
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| T |
8870884 |
gctcactagtatcagtaaacggatgtagtgttatttatgtgtgcatatgatagcactgtgtgcttgattagatagatctattggttaaaaaaaacctttg |
8870983 |
T |
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| Q |
613 |
ccaccctgtgttgaaggaataactctttgtatatccataactataaaccta |
663 |
Q |
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| T |
8870984 |
ccaccctgtgttgaaggaataactctttgtatatcgataactataaaccta |
8871034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 9e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 234 - 435
Target Start/End: Complemental strand, 31858729 - 31858528
Alignment:
| Q |
234 |
agatgccaaagatggatggatatgaggcaacaaaagaaataaggaaatcagaggaaggaacaggaaaacacattccaattgttgctctaacagcccatgc |
333 |
Q |
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| T |
31858729 |
agatgccaaagatggatggatatgaggcaacaaaagaaataaggaaatcagaaattggaacttcattccacattccaatcgtcgctcttacggctcatgc |
31858630 |
T |
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| Q |
334 |
aatgtcttgtgatgaagccaaatgtcttaaggttggcatggatgcttacttaacaaagccaattgacttcaagcttatggtctcaaccattctctcactc |
433 |
Q |
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| T |
31858629 |
aatgtcatgtgatgaagccaaatgtttagaagtgggcatggatgcttatttaaccaagccaattgactttaagctgatggagtctaccattctttcactc |
31858530 |
T |
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| Q |
434 |
ac |
435 |
Q |
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| T |
31858529 |
ac |
31858528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 31858868 - 31858836
Alignment:
| Q |
41 |
atatgatttgatcctaatggattgtcaggtatg |
73 |
Q |
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| T |
31858868 |
atatgacttgatcctaatggattgtcaggtatg |
31858836 |
T |
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