View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9240_low_7 (Length: 602)
Name: NF9240_low_7
Description: NF9240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9240_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 11 - 584
Target Start/End: Original strand, 9235518 - 9236093
Alignment:
| Q |
11 |
aagcagagattataactctagcatgactaccaggcacataatttcaaaagtggtttatgtgaaacaaggcacataatttcgtcatggaaatggggaaact |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9235518 |
aagcacagattataactctagcatgactaccaggcacataatttcaaaagtggtttatgtgaaacaaggcacataatttcgtcatggaaatggggaaact |
9235617 |
T |
|
| Q |
111 |
ttacaagtaataagaattagaggatatggaacac--ggaaagccttagagagcactatgtggcaggatacatgttgcccaataaagccactgctgccaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9235618 |
ttacaagtaataagaattagaggatatggaacacagggaaagccttagagagcactatgtggcaggatacatgttgcccaataaagccactgctgccaat |
9235717 |
T |
|
| Q |
209 |
acaatatttatatagggggaaattgatttagtttgttcttgaatatgaaaataaatataataaatttaaactcgccaaagaattttaaagtgcaggaaaa |
308 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9235718 |
acaatatttatataggggggaattgatttagtttgttcttgaatatgaaaataaatataataaatttaaactcgccaaagaattttaaagtgcaggaaaa |
9235817 |
T |
|
| Q |
309 |
ggggggaaaataaaaaatcagtgaagataaaggtgaagccaatgtgattccataagatcagtatcctacataccttccaaaaccaagatatctgatgatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9235818 |
ggggggaaaataaaaaatcagtgaagataaaggtgaagccaatgtgattccataagatcagtatcctacataccttccaaaaccaagatatctgatgatc |
9235917 |
T |
|
| Q |
409 |
attctctttatagccatgatacttggtatgtgccttccaatcttcaacagaaatggcattctcactgccatgcagcatcaaatcaaaatcttcaaggtct |
508 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9235918 |
attctctttatagccatgatacttggtatgtaccttccaatcttcaacagaaatggcattctcactgccatgcagcatcaaatcaaaatcttcaaggtct |
9236017 |
T |
|
| Q |
509 |
aaaaattgaaagaactcgagccttgagcaagataaaatatcagcaaaaccttcggcaaaatgtgatacctgcttag |
584 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9236018 |
aaaaattgaaagaactcgagccttgagcaagataaaatatcagcaaaaccttcggcaaaatgtgatacctgcttag |
9236093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 227 - 581
Target Start/End: Original strand, 9255987 - 9256338
Alignment:
| Q |
227 |
gaaattgatttagtttgttcttgaatatgaaaataaatataataaatttaaactcgccaaagaattttaaag-tgcaggaaaaggggggaaaataaaaaa |
325 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
9255987 |
gaaattgacttagtttgttcttgaatatgacaataaatataataaatttacactcgccaaagaattttaaaaatgcaggaaaaggggggaaaatagaaaa |
9256086 |
T |
|
| Q |
326 |
tcagtgaagataaaggtgaagccaatgtgattccataagatcagtatcctacataccttccaaaaccaagatatctgatgatcattctctttatagccat |
425 |
Q |
| |
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| ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
9256087 |
t-agtgaagataaag---aagacaatgtgattccataagatcagtgtcctacataccttccaaaaccaagatatctgacaatcattctttttatagccac |
9256182 |
T |
|
| Q |
426 |
gatacttggtatgtgccttccaatcttcaacagaaatggcattctcactgccatgcagcatcaaatcaaaatcttcaaggtctaaaaattgaaagaactc |
525 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
9256183 |
ggtacttggtatgtgccttccaatcttcaacagaaatggcattttcactcccatgcagcatccaatcaagatcttcaaggtctaaaaattgaaagaactc |
9256282 |
T |
|
| Q |
526 |
gagccttgagcaagataaaatatcagcaaaaccttcggcaaaatgtgatacctgct |
581 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
9256283 |
tagccttgagccagatataatatcagcaaaaccctcggcaaaatgcgatacctgct |
9256338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 328 - 581
Target Start/End: Original strand, 9247703 - 9247956
Alignment:
| Q |
328 |
agtgaagataaaggtgaagccaatgtgattccataagatcagtatcctacataccttccaaaaccaagatatctgatgatcattctctttatagccatga |
427 |
Q |
| |
|
||||||||| ||||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
9247703 |
agtgaagatgaaggtaaagacaaagtgatcccataagatcagtatcctacataccttccaaaaccaagatatctgacgatcgttctctttatagccatga |
9247802 |
T |
|
| Q |
428 |
tacttggtatgtgccttccaatcttcaacagaaatggcattctcactgccatgcagcatcaaatcaaaatcttcaaggtctaaaaattgaaagaactcga |
527 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||||||| ||| ||||||||| |||||||| | |
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| T |
9247803 |
tacttggtatgtgccttccaatcttcaacagaaatgtcattttcactcccatgcagcatccaatcaaaatcttcatggtgtaaaaattggaagaactcta |
9247902 |
T |
|
| Q |
528 |
gccttgagcaagataaaatatcagcaaaaccttcggcaaaatgtgatacctgct |
581 |
Q |
| |
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| ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
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| T |
9247903 |
gacttgagcaagatataatatcagcaaaaccttgggcaaaatgtgatatctgct |
9247956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 234 - 584
Target Start/End: Original strand, 9265835 - 9266174
Alignment:
| Q |
234 |
atttagtttgttcttgaatatgaaaataaatataataaatttaaactcgccaaagaattttaaagtgcaggaaaaggggggaaaataaaaaatcagtgaa |
333 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||||| || ||||| ||| ||| |||||| ||| |||| | |||| |||||| |
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| T |
9265835 |
atttagtctgttcttaaatatgaaaataaatataataaatttacgctaaccaaaaaat--------gcaagaaaagagggaaaaa--ataaat-agtgaa |
9265923 |
T |
|
| Q |
334 |
gataaaggtgaagccaatgtgattccataagatcagtatcctacataccttccaaaaccaagatatctgatgatcattctctttatagccatgatacttg |
433 |
Q |
| |
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||| ||||| ||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||| |
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| T |
9265924 |
gatgaaggtaaagacaatgatatcccataagatcagtatcctacataccttccaaaaccaagatatctgacgatcgttctttttatagccaagatacttg |
9266023 |
T |
|
| Q |
434 |
gtatgtgccttccaatcttcaacagaaatggcattctcactgccatgcagcatcaaatcaaaatcttcaaggtctaaaaattgaaagaactcgagccttg |
533 |
Q |
| |
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|| ||||||||||||||||||||| |||| |||| ||||| ||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
9266024 |
gtgtgtgccttccaatcttcaacattaatgtcattttcactcccatgcagcttccaatcaaaatcttcatggtctaaaaattgaaagaactctagccttg |
9266123 |
T |
|
| Q |
534 |
agcaagataaaatatcagcaaaaccttcggcaaaatgtgatacctgcttag |
584 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
9266124 |
agcaagatataatatcagcaaaaccttgggcaaaatgtgatacctgcttag |
9266174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 51 - 202
Target Start/End: Original strand, 9255780 - 9255934
Alignment:
| Q |
51 |
atttcaaaagtggtttatgt-gaaacaaggcacataatttcgtcatggaaatggggaaactttacaagtaataagaattagaggatatggaacac--gga |
147 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| || |||||||| ||||||||| ||| |
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|
| T |
9255780 |
atttcaaaagtggtttatgttgaaacaaggcacataattccgtcatggaaatggggaaacttaacaagtaatcaggattagagggcatggaacacaggga |
9255879 |
T |
|
| Q |
148 |
aagccttagagagcactatgtggcaggatacatgttgcccaataaagccactgct |
202 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
9255880 |
aagccttagagagcaccatgtagcaggatacacgttgcctaataaagccactgct |
9255934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 9247587 - 9247626
Alignment:
| Q |
237 |
tagtttgttcttgaatatgaaaataaatataataaattta |
276 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9247587 |
tagtttattcttgaatatgaaaataaatataataaattta |
9247626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 502
Target Start/End: Original strand, 55698886 - 55699010
Alignment:
| Q |
378 |
ataccttccaaaaccaagatatctgatgatcattctctttatagccatgatacttggtatgtgccttccaatcttcaacagaaatggcattctcactgcc |
477 |
Q |
| |
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|||||| ||||||||||||||||||| ||| | ||| ||||||||| ||||| || ||||| ||||||||||| || |||||||||| ||||| || |
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| T |
55698886 |
atacctcccaaaaccaagatatctgaatatctgtgtctgtatagccattatactcagtgtgtgctttccaatcttcgacggaaatggcatcttcactccc |
55698985 |
T |
|
| Q |
478 |
atgcagcatcaaatcaaaatcttca |
502 |
Q |
| |
|
| |||||||| |||||| ||||||| |
|
|
| T |
55698986 |
acgcagcatccaatcaagatcttca |
55699010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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