View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9241_high_1 (Length: 1147)

Name: NF9241_high_1
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9241_high_1
NF9241_high_1
[»] chr7 (16 HSPs)
chr7 (17-323)||(20145813-20146119)
chr7 (35-323)||(14986989-14987278)
chr7 (35-323)||(15416600-15416889)
chr7 (19-323)||(2546914-2547215)
chr7 (23-239)||(17600539-17600754)
chr7 (57-319)||(24832402-24832670)
chr7 (17-239)||(3743380-3743608)
chr7 (64-226)||(4173452-4173615)
chr7 (391-484)||(2545771-2545864)
chr7 (331-472)||(20146231-20146371)
chr7 (327-469)||(14986744-14986882)
chr7 (327-469)||(15416355-15416493)
chr7 (115-219)||(10649240-10649344)
chr7 (352-471)||(4173104-4173222)
chr7 (68-200)||(18046371-18046501)
chr7 (437-473)||(2563197-2563233)
[»] chr8 (22 HSPs)
chr8 (17-323)||(28371034-28371341)
chr8 (22-238)||(9218079-9218298)
chr8 (327-583)||(28371450-28371705)
chr8 (108-239)||(23540219-23540351)
chr8 (354-472)||(23539981-23540099)
chr8 (20-146)||(10660970-10661095)
chr8 (67-239)||(9286326-9286498)
chr8 (105-239)||(16600591-16600725)
chr8 (139-301)||(10661748-10661911)
chr8 (78-220)||(13110204-13110345)
chr8 (391-469)||(10662109-10662187)
chr8 (108-155)||(26136195-26136242)
chr8 (78-218)||(18672125-18672261)
chr8 (67-173)||(22713661-22713767)
chr8 (175-239)||(24577344-24577408)
chr8 (82-217)||(25095052-25095187)
chr8 (67-239)||(27123582-27123752)
chr8 (119-170)||(15340931-15340983)
chr8 (119-170)||(15429996-15430048)
chr8 (119-170)||(15521300-15521352)
chr8 (119-170)||(41652021-41652073)
chr8 (82-128)||(9006930-9006976)
[»] chr2 (17 HSPs)
chr2 (15-323)||(18929235-18929543)
chr2 (17-309)||(26650839-26651133)
chr2 (327-564)||(18929651-18929887)
chr2 (23-226)||(17402729-17402932)
chr2 (36-251)||(25520385-25520601)
chr2 (67-226)||(31404046-31404205)
chr2 (388-568)||(17403198-17403377)
chr2 (188-323)||(19878981-19879117)
chr2 (352-471)||(26651281-26651400)
chr2 (67-323)||(24543870-24544126)
chr2 (100-226)||(20478255-20478379)
chr2 (416-536)||(25519999-25520118)
chr2 (115-228)||(29891263-29891376)
chr2 (119-170)||(28760672-28760724)
chr2 (1091-1135)||(17403898-17403942)
chr2 (82-168)||(17162015-17162101)
chr2 (67-168)||(17636690-17636791)
[»] chr5 (28 HSPs)
chr5 (43-310)||(19217911-19218177)
chr5 (57-315)||(20064388-20064653)
chr5 (57-323)||(20060802-20061075)
chr5 (108-323)||(20713228-20713443)
chr5 (108-324)||(23210024-23210240)
chr5 (57-323)||(20058550-20058824)
chr5 (334-541)||(20064063-20064265)
chr5 (108-321)||(25951315-25951528)
chr5 (352-472)||(25951664-25951783)
chr5 (352-471)||(20058300-20058418)
chr5 (374-472)||(21165557-21165655)
chr5 (139-239)||(23379373-23379474)
chr5 (67-226)||(17167275-17167433)
chr5 (67-173)||(19924022-19924128)
chr5 (352-474)||(23209772-23209893)
chr5 (19-215)||(23355581-23355777)
chr5 (67-200)||(24878356-24878489)
chr5 (352-471)||(20061207-20061323)
chr5 (67-173)||(19926749-19926855)
chr5 (88-221)||(17987487-17987619)
chr5 (427-471)||(19217727-19217771)
chr5 (427-502)||(17987914-17987988)
chr5 (1093-1135)||(24879513-24879555)
chr5 (352-425)||(20713575-20713647)
chr5 (390-498)||(24878782-24878889)
chr5 (19-50)||(24878288-24878319)
chr5 (119-168)||(31533052-31533102)
chr5 (392-502)||(22011479-22011588)
[»] chr3 (25 HSPs)
chr3 (17-323)||(15686859-15687166)
chr3 (24-251)||(24699049-24699275)
chr3 (23-239)||(26010836-26011055)
chr3 (36-219)||(13428733-13428914)
chr3 (391-569)||(9033046-9033225)
chr3 (19-324)||(4765605-4765916)
chr3 (44-239)||(4769742-4769937)
chr3 (108-323)||(7148790-7149005)
chr3 (17-239)||(4832516-4832740)
chr3 (100-323)||(9033398-9033622)
chr3 (111-323)||(29614512-29614724)
chr3 (73-215)||(23378488-23378631)
chr3 (350-539)||(4765286-4765475)
chr3 (355-568)||(4770096-4770307)
chr3 (108-239)||(16242937-16243069)
chr3 (352-470)||(24698727-24698845)
chr3 (391-471)||(15687340-15687420)
chr3 (376-469)||(16242605-16242699)
chr3 (77-200)||(27304424-27304547)
chr3 (408-471)||(29614037-29614100)
chr3 (350-458)||(4832190-4832300)
chr3 (77-151)||(8737234-8737308)
chr3 (77-151)||(9089472-9089546)
chr3 (82-128)||(13409833-13409879)
chr3 (421-471)||(13428406-13428456)
[»] chr6 (20 HSPs)
chr6 (17-245)||(22397548-22397777)
chr6 (108-323)||(16177304-16177519)
chr6 (112-324)||(15830026-15830238)
chr6 (355-568)||(17525233-17525444)
chr6 (26-226)||(17524797-17524998)
chr6 (108-239)||(1177214-1177349)
chr6 (410-538)||(31125745-31125872)
chr6 (67-200)||(18713709-18713842)
chr6 (67-200)||(17947890-17948023)
chr6 (67-172)||(14762985-14763090)
chr6 (57-323)||(31126065-31126351)
chr6 (391-565)||(22394009-22394179)
chr6 (387-471)||(16177672-16177759)
chr6 (69-170)||(28712360-28712461)
chr6 (353-430)||(1176918-1176994)
chr6 (119-170)||(13002854-13002906)
chr6 (82-152)||(25945846-25945916)
chr6 (374-460)||(32784447-32784534)
chr6 (119-168)||(24154179-24154229)
chr6 (126-170)||(10163272-10163317)
[»] chr4 (9 HSPs)
chr4 (17-251)||(11361595-11361830)
chr4 (24-225)||(9409168-9409370)
chr4 (329-472)||(11362017-11362160)
chr4 (67-239)||(16675086-16675259)
chr4 (108-170)||(5358040-5358102)
chr4 (67-239)||(4697454-4697626)
chr4 (82-129)||(18558469-18558516)
chr4 (120-170)||(26654144-26654195)
chr4 (427-505)||(10071001-10071078)
[»] chr1 (16 HSPs)
chr1 (62-323)||(20146169-20146437)
chr1 (43-323)||(11013745-11014027)
chr1 (73-323)||(33103021-33103273)
chr1 (331-468)||(20146549-20146686)
chr1 (350-471)||(11013493-11013614)
chr1 (67-239)||(36571655-36571826)
chr1 (111-238)||(20150435-20150563)
chr1 (87-237)||(22607834-22607984)
chr1 (111-323)||(13201980-13202192)
chr1 (390-583)||(22619579-22619770)
chr1 (81-239)||(17615272-17615430)
chr1 (110-200)||(22620063-22620153)
chr1 (67-139)||(20866221-20866293)
chr1 (188-251)||(13232737-13232801)
chr1 (89-128)||(20886571-20886610)
chr1 (119-169)||(23455191-23455242)
[»] scaffold0555 (2 HSPs)
scaffold0555 (62-323)||(5582-5851)
scaffold0555 (331-464)||(5337-5470)
[»] scaffold0264 (2 HSPs)
scaffold0264 (17-323)||(20793-21097)
scaffold0264 (350-461)||(21225-21337)
[»] scaffold0002 (2 HSPs)
scaffold0002 (67-323)||(374041-374294)
scaffold0002 (415-568)||(373696-373847)
[»] scaffold0337 (2 HSPs)
scaffold0337 (67-239)||(17221-17392)
scaffold0337 (67-182)||(4546-4661)
[»] scaffold0016 (1 HSPs)
scaffold0016 (139-239)||(12991-13092)
[»] scaffold0795 (2 HSPs)
scaffold0795 (327-471)||(5725-5869)
scaffold0795 (263-323)||(5971-6031)
[»] scaffold0161 (1 HSPs)
scaffold0161 (352-464)||(5276-5388)
[»] scaffold0142 (1 HSPs)
scaffold0142 (98-251)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (115-239)||(871-996)
[»] scaffold0040 (1 HSPs)
scaffold0040 (67-170)||(26930-27031)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 3e-94; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 20145813 - 20146119
Alignment:
Q  17 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 116  Q
    |||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||| | ||||||||||| ||||||||||||||||    
T  20145813 tgtggcgtctttcgacagaaaa-aggttttaaaagcaaagtaaatgcattaactttaaattgcagaaacttcaaggaaaggtagaatacaatgcattaaa 20145911  T
Q  117 aataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| || |||||||||||| || || ||||||||||    
T  20145912 aataaaggtggttcgacaaatcctttacatacattctttatgactctcttctctcgcgccagtacttcgagtgttttagaattatgcatgggtgatttgc 20146011  T
Q  217 gacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgctt 315  Q
    ||||||||||  ||||| ||||||  |||| ||||| ||  | ||| |||||||||||| |||||||| ||||||||| |||||||| |||||| |||||    
T  20146012 gacccgttttacctatgaaaaactactatttatacataggaaataacttggaaagaaactaatcccacgatcagcactccttccatgaagacaaccgctt 20146111  T
Q  316 gtctccca 323  Q
    ||||||||    
T  20146112 gtctccca 20146119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 35 - 323
Target Start/End: Complemental strand, 14987278 - 14986989
Alignment:
Q  35 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaa-tacaatgcattaaaaataaaggtggttcgac 133  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| |||||| ||||| |||| ||||| ||||   |||||||||||||||||||||||     
T  14987278 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 14987179  T
Q  134 aaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatg 232  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||| |||||||| ||||  |||||    
T  14987178 aaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgacccattttccctatg 14987079  T
Q  233 gaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
    ||||||||||||| ||||||||| | |||  |||||||||||  ||| ||| |||| |||| ||||||||||||||| |||||||||||||    
T  14987078 gaaaactcttatttatacaaagaaaataa-gtggaaagaaacttatctcacgatcatcactccttccatgtagacaaccgcttgtctccca 14986989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 35 - 323
Target Start/End: Complemental strand, 15416889 - 15416600
Alignment:
Q  35 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaa-tacaatgcattaaaaataaaggtggttcgac 133  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| |||||| ||||| |||| ||||| ||||   |||||||||||||||||||||||     
T  15416889 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 15416790  T
Q  134 aaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatg 232  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||| |||||||| ||||  |||||    
T  15416789 aaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgacccattttccctatg 15416690  T
Q  233 gaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
    ||||||||||||| ||||||||| | |||  |||||||||||  ||| ||| |||| |||| ||||||||||||||| |||||||||||||    
T  15416689 gaaaactcttatttatacaaagaaaataa-gtggaaagaaacttatctcacgatcatcactccttccatgtagacaaccgcttgtctccca 15416600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 2546914 - 2547215
Alignment:
Q  19 tggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaa 118  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||     ||||    
T  2546914 tggcgtctttcgacggaaaaaaggttttaaaagcaaagaaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatg----taaaa 2547009  T
Q  119 taaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcga 218  Q
    ||||||||||  | |||||||||||||| |||||||||||||| ||||||||||   |||||||| || |||||||||||| | ||||||||||||||||    
T  2547010 taaaggtggtctgccaaatcctttacatccattctttatgacttttttctctcgggtcggtacttcgagtgttttagaattctatataggtgatttgcga 2547109  T
Q  219 cccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgt 317  Q
    ||||||||  |||||||||||| ||| | ||||| ||| |   |  | ||||||||| |||||||| |||| |||| ||||||||||||||| |||||||    
T  2547110 cccgttttccctatggaaaactattacttatacatagaaaaataactagaaagaaactaatcccacgatcaacactccttccatgtagacaaccgcttgt 2547209  T
Q  318 ctccca 323  Q
    ||||||    
T  2547210 ctccca 2547215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 17600539 - 17600754
Alignment:
Q  23 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaa 122  Q
    ||||||||||| ||||||||||||||||| ||||| |||| |  | ||||||||| || |||| |||||||||| ||| |||||| ||||||||||||||    
T  17600539 gtctttcgacaaaaaaaaggttttaaaagaaaagtaaaggaa--aggtttaaattccataaacttaaaggaaagataacatacaaagcattaaaaataaa 17600636  T
Q  123 ggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccg 222  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| || |||||||||||| ||||||||||||||||||| ||    
T  17600637 ggttgttcgacaaatcctttacatacattctttatgactctttcctctcgtgccggtacttcgagtgttttagaattctgtataggtgatttgcgacacg 17600736  T
Q  223 tttttc-tatggaaaact 239  Q
    |||| | |||||||||||    
T  17600737 ttttccttatggaaaact 17600754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 57 - 319
Target Start/End: Original strand, 24832402 - 24832670
Alignment:
Q  57 ttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacataca 149  Q
    |||| |||||||||||||||||||||||| ||||| ||||  |||||||||       |||||||||||||| ||||||||||||||| |||||||||||    
T  24832402 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataatggtggttcgacaaattctttacataca 24832501  T
Q  150 ttctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttattaat 248  Q
    ||||||||||||||||||||| || ||| ||||| || ||||||| |||| |||||||| |||||||||||||||||  ||||| |||||| ||||| ||    
T  24832502 ttctttatgactcttttctcttgcgccgatacttcgagtgtttta-aattctgtataggcgatttgcgacccgttttccctatgaaaaactattatttat 24832600  T
Q  249 acaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtct 319  Q
    ||| ||  | |||  | ||||||||| |||| ||  |||| |||| ||||||||||||||| |||||||||    
T  24832601 acataggaaataa-gtagaaagaaactaatctcatgatcaccactccttccatgtagacaaccgcttgtct 24832670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 3743380 - 3743608
Alignment:
Q  17 tgtggcgtctttcgacagaaaaaaggtttt--aaaagcaaagttaaggcatt-aagttt-aaattgcagaaacgtaaaggaaaggtaaaatacaatgcat 112  Q
    ||||| ||||||||||| ||||| ||||||  || || ||||| |||||||| |||||| ||||||||||| | | |||||||  |||| ||||| ||||    
T  3743380 tgtggtgtctttcgacaaaaaaagggttttttaacagtaaagtaaaggcattcaagtttgaaattgcagaatcttgaaggaaaaataaagtacaaggcat 3743479  T
Q  113 taaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatg-ttttagaattttgtataggtga 211  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||   || ||||||||| || || |||||||||| |||||||||||    
T  3743480 taaaaataaaggtggttcgacaaatcctttgtatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtga 3743579  T
Q  212 tttgcgacccgtttt-tctatggaaaact 239  Q
    ||||||||||||||| ||| |||||||||    
T  3743580 tttgcgacccgttttctctttggaaaact 3743608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 4173615 - 4173452
Alignment:
Q  64 attaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactc 162  Q
    |||||||||||||||||||||| ||||| |||    |||| ||| ||||||||| |||||  | ||||||||||||||||||||||||||||||||||||    
T  4173615 attaagtttaaattgcagaaacttaaagaaaaatacaaatgcaagtgcattaaagataaaactagttcgacaaatcctttacatacattctttatgactc 4173516  T
Q  163 ttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt 226  Q
    |||||||||||  || ||||| || |||||||||||| | |||||| |||||||||||||||||    
T  4173515 ttttctctcgcgtcgatacttcgagtgttttagaattctctataggcgatttgcgacccgtttt 4173452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 391 - 484
Target Start/End: Original strand, 2545771 - 2545864
Alignment:
Q  391 aaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaa 484  Q
    |||||||||| ||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  2545771 aaaagacttcgattcctgcaagagtaaaagtcaagtaatgttgaccacattaaatgaggctggtgaaattaccagctaacaaattgcctcccaa 2545864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 331 - 472
Target Start/End: Original strand, 20146231 - 20146371
Alignment:
Q  331 aaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatg 430  Q
    |||||||| |||||||| | |||||| ||||||||||| ||||||||||||| |  |||| |||  |||| |||||   || ||||||| ||||| ||||    
T  20146231 aaggcttcaagacttttta-tgctaactccaacatctcgttgaaactcctttaacagaaggaaaagcttcgattcctttaacagtaaaagtcaactaatg 20146329  T
Q  431 ttgaccacattaaatgaggctggtgaaaataccagctaacaa 472  Q
    |||||||||||| || | |||| ||||||||||| |||||||    
T  20146330 ttgaccacattacataacgctgatgaaaataccatctaacaa 20146371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 469
Target Start/End: Complemental strand, 14986882 - 14986744
Alignment:
Q  327 ctttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaag-aaaagacttcaattcccgcaagagtaaaaatcaac 425  Q
    ||||||||||| | ||| |||  |||  ||||| |||||||| |||||||| |||| |||| || |||| ||||  ||||| |||||||||||| |||||    
T  14986882 ctttaaggctttgggacattttcatgtgaagtctaacatctcgttgaaacttcttttattggagaaaaatacttggattcctgcaagagtaaaagtcaac 14986783  T
Q  426 caatgttgaccacattaaatgaggctggtgaaaataccagctaa 469  Q
     ||||||||||     ||||||||||||||||||||||||||||    
T  14986782 taatgttgacc-----aaatgaggctggtgaaaataccagctaa 14986744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 469
Target Start/End: Complemental strand, 15416493 - 15416355
Alignment:
Q  327 ctttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaag-aaaagacttcaattcccgcaagagtaaaaatcaac 425  Q
    ||||||||||| | ||| |||  |||  ||||| |||||||| |||||||| |||| |||| || |||| ||||  ||||| |||||||||||| |||||    
T  15416493 ctttaaggctttgggacattttcatgtgaagtctaacatctcgttgaaacttcttttattggagaaaaatacttggattcctgcaagagtaaaagtcaac 15416394  T
Q  426 caatgttgaccacattaaatgaggctggtgaaaataccagctaa 469  Q
     ||||||||||     ||||||||||||||||||||||||||||    
T  15416393 taatgttgacc-----aaatgaggctggtgaaaataccagctaa 15416355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 10649344 - 10649240
Alignment:
Q  115 aaaataaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatt 213  Q
    ||||||||||||||| |  |||||  |||||||||||||||||| ||||||||||||||  ||||||||| || |||||| ||| ||| |||| ||||||    
T  10649344 aaaataaaggtggtttggaaaatcagtttacatacattctttataactcttttctctcgtgccggtacttcgagtgtttt-gaaatttctataagtgatt 10649246  T
Q  214 tgcgac 219  Q
    ||||||    
T  10649245 tgcgac 10649240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 352 - 471
Target Start/End: Complemental strand, 4173222 - 4173104
Alignment:
Q  352 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 451  Q
    |||| |||||||||||| | ||| ||| ||||||||||| ||| ||||  || || |||| | || || ||||| |||||||| |||||||||| ||||     
T  4173222 gctaggtccaacatctcgtcgaa-ctcttttgattgaaggaaatactttgatacctgcaaaattataagtcaactaatgttgaacacattaaataaggca 4173124  T
Q  452 ggtgaaaataccagctaaca 471  Q
    ||||||||||||||||||||    
T  4173123 ggtgaaaataccagctaaca 4173104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 200
Target Start/End: Original strand, 18046371 - 18046501
Alignment:
Q  68 agtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactctttt 166  Q
    ||||||||  ||| |||| ||||| ||||||||| | || |||||||||| |||||||||||||||||||| | ||||| ||||| | ||||   |||||    
T  18046371 agtttaaaacgcaaaaacttaaagaaaaggtaaattgcattgcattaaaa-taaaggtggttcgacaaatcatattacacacattatgtatg--cctttt 18046467  T
Q  167 ctctcgctccggtactttgaatgttttagaattt 200  Q
     |||||| |||||||||  | |||||||||||||    
T  18046468 ttctcgcgccggtacttcaattgttttagaattt 18046501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 437 - 473
Target Start/End: Original strand, 2563197 - 2563233
Alignment:
Q  437 acattaaatgaggctggtgaaaataccagctaacaaa 473  Q
    |||||||||||||||||||||| ||||||||||||||    
T  2563197 acattaaatgaggctggtgaaattaccagctaacaaa 2563233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 2e-92; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 28371034 - 28371341
Alignment:
Q  17 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 116  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  28371034 tgtggcgtctttcgacagaaaaatggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaacttaaaggaacagtaaaatacaatgcattaaa 28371133  T
Q  117 aataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgc 216  Q
    |||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||| | | ||||||| || |||||||||||||| ||||||||||||||    
T  28371134 aataaaggaggttcgacaaatactttacatacattctttatgacttttttcactcacactggtacttcgagtgttttagaattttatataggtgatttgc 28371233  T
Q  217 gacccgtttt-tctatggaaaactcttattaataca-aagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgct 314  Q
    ||||| ||||  ||||||||||||  |||| ||||| |||| | ||| |||||||||||| |||| ||| ||||||||| ||||||||||||||| ||||    
T  28371234 gacccattttccctatggaaaactactatttatacataaga-aataacttggaaagaaactaatctcacgatcagcactccttccatgtagacaaccgct 28371332  T
Q  315 tgtctccca 323  Q
    |||||||||    
T  28371333 tgtctccca 28371341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 9218079 - 9218298
Alignment:
Q  22 cgtctttcgacagaaaaaa----ggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaa 117  Q
    |||||||||||||||||||    | ||||||||||||||| ||  ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  9218079 cgtctttcgacagaaaaaaaaaggtttttaaaagcaaagtaaaaacattaagtttaaattgcagaaacttaaaggaaagataaaatacaatgcattaaaa 9218178  T
Q  118 ataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcg 217  Q
    |||||| |||||||||||||| |||||||||||||| |||||  ||||||||||||  |||||||| || |||||||||||| |||||| ||||||||||    
T  9218179 ataaagatggttcgacaaatcatttacatacattctgtatga--cttttctctcgcgtcggtacttcgagtgttttagaattctgtatatgtgatttgcg 9218276  T
Q  218 acccgtttt-tctatggaaaac 238  Q
    |||||||||  |||||||||||    
T  9218277 acccgttttccctatggaaaac 9218298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 327 - 583
Target Start/End: Original strand, 28371450 - 28371705
Alignment:
Q  327 ctttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaacc 426  Q
    |||||||||||| ||||||||  ||||||||||||||||||| |  |||||||||| | ||| | ||||  ||| |||||  | ||| ||||| |||||     
T  28371450 ctttaaggcttccagactttttcatgctaagtccaacatctcgtcaaaactcctttaactgagggaaaggtttcgattcctaccagaataaaagtcaact 28371549  T
Q  427 aatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattg 526  Q
    ||| ||| ||||||||||| | ||| |||||||||||| ||||||||||||| || || |||||  ||||||||| ||||| | ||||  ||||||||||    
T  28371550 aatattggccacattaaattatgctagtgaaaataccaactaacaaattgccaccaaa-aaatgttattttcgactgaatacattcaaaagagagaattg 28371648  T
Q  527 acatttttgagaaaacgctaagtatttcaaagcatgatgtcacaattatcatgactt 583  Q
    |||||||||||||||| ||| ||||| ||||||||||||||||  | ||||||||||    
T  28371649 acatttttgagaaaactctatgtattccaaagcatgatgtcactctaatcatgactt 28371705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 23540351 - 23540219
Alignment:
Q  108 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 207  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |  |||||||||||| | |||||||||| |||||||    
T  23540351 tgcattaaaaataaaggtggttcgaaaaatcttttacatacattctttatgattcttttctcttgagccggtactttgagtattttagaattctgtatag 23540252  T
Q  208 gtgatttgcgacccgtttt-tctatggaaaact 239  Q
    ||||||||| |||||||||  ||||||||||||    
T  23540251 gtgatttgcaacccgttttccctatggaaaact 23540219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 354 - 472
Target Start/End: Complemental strand, 23540099 - 23539981
Alignment:
Q  354 taagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctgg 453  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| | | |||||||||||| ||||| ||| |||||||||||||||||||||||    
T  23540099 taagtccaacatctcgtcgaaactcctttgattgaagaaaagacttcaaatactgcaagagtaaaagtcaactaatattgaccacattaaatgaggctgg 23540000  T
Q  454 tgaaaataccagctaacaa 472  Q
    ||| ||||| |||||||||    
T  23539999 tgacaatacgagctaacaa 23539981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 10660970 - 10661095
Alignment:
Q  20 ggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaat 119  Q
    ||||||||| |||||||||  ||||||||||||||||| ||| ||||||||||||||||||| ||  |||||||||||| |||  ||||||||| |||||    
T  10660970 ggcgtctttggacagaaaag-ggttttaaaagcaaagtaaagacattaagtttaaattgcaggaagttaaaggaaaggtgaaacgcaatgcattcaaaat 10661068  T
Q  120 aaaggtggttcgacaaatcctttacat 146  Q
    |||||||||||||||||||||||||||    
T  10661069 aaaggtggttcgacaaatcctttacat 10661095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 9286498 - 9286326
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| ||||||||| ||||  |||| |||| | || |||||||||||||||||| ||||||||||||||||||||||||| | ||| ||| ||||    
T  9286498 aagttaaaagtgcagaaacttaaaaaaaagataaattgcattgcattaaaaataaaggtagttcgacaaatcctttacatacattttgtataactatttt 9286399  T
Q  167 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 239  Q
    ||||||| ||||||||| || |||| ||||| ||| |||| |||||||||||||||||||  ||||||||||||    
T  9286398 ctctcgcaccggtacttcgagtgttgtagaa-tttctatatgtgatttgcgacccgttttccctatggaaaact 9286326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 16600591 - 16600725
Alignment:
Q  105 caatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgta 204  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||| | ||| ||||| ||||||||| ||||||||| || |||| ||||| ||| ||    
T  16600591 caatgcattaaaaataaatgtggttcgacaaatcctttacgtacattatgtataactctattctctcgcgccggtacttcgagtgttgtagaa-tttcta 16600689  T
Q  205 taggtgatttgcgacccgttttt-ctatggaaaact 239  Q
    || ||||||||| |||||||||| ||||||||||||    
T  16600690 taagtgatttgcaacccgtttttcctatggaaaact 16600725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 139 - 301
Target Start/End: Original strand, 10661748 - 10661911
Alignment:
Q  139 ctttacatacattctttatgactcttttctctcgctccggtactttga-atgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaa 236  Q
    |||||||||||||||||||||||||||| | |||| ||||||| |||| |  |||||||||| |||||||||||||||||||| |||||  | |||||||    
T  10661748 ctttacatacattctttatgactcttttttatcgcaccggtacattgagagtttttagaattctgtataggtgatttgcgacctgttttcccaatggaaa 10661847  T
Q  237 actcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccat 301  Q
    ||||||||| ||||| ||| |  ||  ||||||||||| |||||||| |||| |||| |||||||    
T  10661848 actcttatttatacatagaaaacaa-ctggaaagaaactaatcccacgatcaacactccttccat 10661911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 13110204 - 13110345
Alignment:
Q  78 gcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccg 177  Q
    |||||||| ||||| |||| |||| | || ||||||||||||||||||||||| ||||||| | |||||| ||| | ||| ||||||||||||| | |||    
T  13110204 gcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcaacaaatcatatacatatattttgtataactcttttctctctcgccg 13110303  T
Q  178 gtactttgaatgttttagaattttgtataggtgatttgcgacc 220  Q
    |||||| || |||| ||||| ||| |||| |||||||||||||    
T  13110304 gtacttcgagtgttgtagaa-tttctataagtgatttgcgacc 13110345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 391 - 469
Target Start/End: Original strand, 10662109 - 10662187
Alignment:
Q  391 aaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaa 469  Q
    |||||||||| | ||| |||||||||||| ||||| |||||||||||||||||||||| ||||||||| || |||||||    
T  10662109 aaaagacttcgagtcctgcaagagtaaaagtcaactaatgttgaccacattaaatgagtctggtgaaattatcagctaa 10662187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 26136242 - 26136195
Alignment:
Q  108 tgcattaaaaataaaggtggttcgacaaatcctttacatacattcttt 155  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26136242 tgcattaaaaataaaggtggtccgacaaatcctttacatacattcttt 26136195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 18672261 - 18672125
Alignment:
Q  78 gcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccg 177  Q
    |||||||| | ||| |||| |||| |||| ||||||||||||||||||   || ||||||| |||||||||||| | ||| ||||||||||||| | ||     
T  18672261 gcagaaacttcaagaaaagataaattacattgcattaaaaataaaggt---tcaacaaatcatttacatacattttgtataactcttttctctctcgcca 18672165  T
Q  178 gtactttgaatgttttagaattttgtataggtgatttgcga 218  Q
    |||||| || |||| ||||| ||| |||| |||||||||||    
T  18672164 gtacttcgagtgttgtagaa-tttctataagtgatttgcga 18672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 22713767 - 22713661
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| || |||||| ||||| |||| |||  |||| |||||||||||||||||||||| ||||||| ||||||||| ||||| ||| | ||||||    
T  22713767 aagttaaaagtgtagaaacttaaagaaaagataatttacattgcattaaaaataaaggtggtttgacaaattctttacatatattctatataaatctttt 22713668  T
Q  167 ctctcgc 173  Q
    || ||||    
T  22713667 ctatcgc 22713661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 24577408 - 24577344
Alignment:
Q  175 ccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaact 239  Q
    ||||||||| || |||||||||||| |||||||||||||||| ||||||||| ||||| ||||||    
T  24577408 ccggtacttcgattgttttagaattctgtataggtgatttgccacccgttttcctatgaaaaact 24577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 25095052 - 25095187
Alignment:
Q  82 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt-acatacattctttatgactcttttctctcgctccggta 180  Q
    |||| ||||| |||| |||| | || |||||| | |||||||||||||||||||||  ||| ||||||||  | ||| |||||||| |||||| ||||||    
T  25095052 aaacttaaagaaaagataaattgcattgcatttataataaaggtggttcgacaaataattttacatacatcatgtataactcttttatctcgcgccggta 25095151  T
Q  181 ctttgaatgttttagaattttgtataggtgatttgcg 217  Q
    ||| |  |||||||||| ||| |||| ||||||||||    
T  25095152 cttcgggtgttttagaa-tttctataagtgatttgcg 25095187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 27123752 - 27123582
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactcttt 165  Q
    |||||||||  ||| |||| |||||||| | |||| | || |||||||||| |||||||||||||| |||||   ||||||||||| | ||| |||||||    
T  27123752 aagtttaaaacgcataaacttaaaggaatgataaattgcattgcattaaaa-taaaggtggttcgataaatcagattacatacattatgtataactcttt 27123654  T
Q  166 tctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaact 239  Q
    ||||||||  ||||||  ||| |||| ||||| ||| ||||  ||||||||||| | ||||| ||||||||||||    
T  27123653 tctctcgcatcggtac--tgagtgttgtagaa-tttctataattgatttgcgactcatttttcctatggaaaact 27123582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 15340983 - 15340931
Alignment:
Q  119 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctct 170  Q
    ||||||||||| ||||||||  |||||||||||||| ||||||||||||||||    
T  15340983 taaaggtggtttgacaaatcagtttacatacattctgtatgactcttttctct 15340931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 15430048 - 15429996
Alignment:
Q  119 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctct 170  Q
    ||||||||||| ||||||||  |||||||||||||| ||||||||||||||||    
T  15430048 taaaggtggtttgacaaatcagtttacatacattctgtatgactcttttctct 15429996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 15521352 - 15521300
Alignment:
Q  119 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctct 170  Q
    ||||||||||| ||||||||  |||||||||||||| ||||||||||||||||    
T  15521352 taaaggtggtttgacaaatcagtttacatacattctgtatgactcttttctct 15521300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 41652073 - 41652021
Alignment:
Q  119 taaaggtggttcgacaaatcct-ttacatacattctttatgactcttttctct 170  Q
    ||||||||||||||||||||   ||||||||||||| ||||||||||||||||    
T  41652073 taaaggtggttcgacaaatcaaattacatacattctgtatgactcttttctct 41652021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 9006930 - 9006976
Alignment:
Q  82 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggt 128  Q
    |||| |||||||||||||||||  | |||||||||||||||||||||    
T  9006930 aaacttaaaggaaaggtaaaatgtattgcattaaaaataaaggtggt 9006976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 1e-90; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 15 - 323
Target Start/End: Original strand, 18929235 - 18929543
Alignment:
Q  15 cctgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcatta 114  Q
    |||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18929235 cctgtggcgtatttcgacataaaa-aggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatgcatta 18929333  T
Q  115 aaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgattt 214  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||| | ||||||||| || |||||||||||| | ||||||||||||    
T  18929334 aaaataaaggtggttcgataaatcttttacatacattctttatgactatcttctctcacgccggtacttcgagtgttttagaattctatataggtgattt 18929433  T
Q  215 gcgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgc 313  Q
    || |||| ||||  || |||||||||  |||| || || ||| | ||| |||||||||||| |||||||| |||| |||| ||||||||||||||| |||    
T  18929434 gcaacccattttccctttggaaaactactatttatgcatagaaaataacttggaaagaaactaatcccacgatcaacactccttccatgtagacaaccgc 18929533  T
Q  314 ttgtctccca 323  Q
    ||||||||||    
T  18929534 ttgtctccca 18929543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 26650839 - 26651133
Alignment:
Q  17 tgtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaa 115  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||| ||||     
T  26650839 tgtggcttctttcgacagaaaaaagggttttaaaagcaaagtaaagacatgaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatggattat 26650938  T
Q  116 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||| || |||||||||||| |||||||||||||||    
T  26650939 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtgcttcgagtgttttagaattctgtataggtgatttg 26651038  T
Q  216 cgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaa 309  Q
    ||||| |||||  |||||||||||||||||| ||||| ||| |   |  | ||||||||| |||||||| || ||||||  ||||||||||||||    
T  26651039 cgacctgttttccctatggaaaactcttatttatacatagaaaaataactagaaagaaaccaatcccacgattagcactcattccatgtagacaa 26651133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 327 - 564
Target Start/End: Original strand, 18929651 - 18929887
Alignment:
Q  327 ctttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaacc 426  Q
    |||||||| ||||||||||||  ||||||||||||| ||||  | ||||||||||| ||||| ||||| ||||||||||| |||||||||||| |||||     
T  18929651 ctttaaggattcgagactttttcatgctaagtccaaaatcttgtcgaaactcctttaattgaggaaaatacttcaattcctgcaagagtaaaagtcaact 18929750  T
Q  427 aatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattg 526  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||| |||||||||| ||||||| |||| |||||||||||    
T  18929751 aatgttcaccacattaaatgaggttggtgaaaataccagctaacaaatttcccctcaa-aaatgtcattttcgactgaatatattcaaaggagagaattg 18929849  T
Q  527 acatttttgagaaaacgctaagtatttcaaagcatgat 564  Q
    |||||||||||||||| |||||||||||||||||||||    
T  18929850 acatttttgagaaaactctaagtatttcaaagcatgat 18929887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 17402729 - 17402932
Alignment:
Q  23 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaa 122  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||  |||||||||||||||||||||||||    
T  17402729 gtctttcaacaaaaaaaaggttttaaaagcaaagtaaaggcaataagtttaaattgcagaaacttaaaggaaatataaaatacaatgcattaaaaataaa 17402828  T
Q  123 ggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccg 222  Q
    |||||||  |||||||||||||||||||||||||| ||| ||||||||||  ||||||||| || |||||||||||| | |||||||||||||||||| |    
T  17402829 ggtggttatacaaatcctttacatacattctttataacttttttctctcgtgccggtacttagagtgttttagaattctatataggtgatttgcgacctg 17402928  T
Q  223 tttt 226  Q
    ||||    
T  17402929 tttt 17402932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 25520601 - 25520385
Alignment:
Q  36 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaa 135  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||  ||||| |||| |||| |||| ||||||||||||||||| ||||||||||    
T  25520601 aaaaaggttttaaaagcaaagtaaaggcattaagttaaaattgcagaaagttaaagaaaagataaactacattgcattaaaaataaaggaggttcgacaa 25520502  T
Q  136 atcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatgga 234  Q
    | |||||||||||||| | ||||||||||||||||||| |||  |||| || ||||||| |||| |||||||||||||||| |||||||||  |||||||    
T  25520501 aacctttacatacattatgtatgactcttttctctcgcgccgtcacttcgagtgttttataattctgtataggtgatttgcaacccgttttccctatgga 25520402  T
Q  235 aaactcttattaataca 251  Q
    ||||| ||||| |||||    
T  25520401 aaactattatttataca 25520385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 67 - 226
Target Start/End: Complemental strand, 31404205 - 31404046
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt-acatacattctttatgactcttt 165  Q
    ||||||||| ||||||||| ||||| ||||||||| | || ||||||||||  ||||||||||||||||||| ||| ||||||||||| ||| |||||||    
T  31404205 aagtttaaaatgcagaaacttaaagaaaaggtaaattgcattgcattaaaataaaaggtggttcgacaaatcattttacatacattctgtataactcttt 31404106  T
Q  166 tctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt 226  Q
    |||||||| ||||||||| || |||||||||| |||  ||| |||||||||||||| ||||    
T  31404105 tctctcgcgccggtacttcgagtgttttagaa-tttcaataagtgatttgcgacccatttt 31404046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 388 - 568
Target Start/End: Original strand, 17403198 - 17403377
Alignment:
Q  388 aagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaa 487  Q
    ||||||||||||||||| | ||||  |||||| | ||| |||||||||||||||||||||||||||| ||| |||||||||| ||||| |||   || ||    
T  17403198 aagaaaagacttcaattgctgcaaaggtaaaagttaactaatgttgaccacattaaatgaggctggtaaaattaccagctaaaaaatttcccaaaaaaaa 17403297  T
Q  488 atgccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgatgtca 568  Q
    |||||||||| |||  || ||  || | |||||  |||||||||||| || |||| |||||||||||||||||||||||||    
T  17403298 atgccatttttgactaaagattttcgaaggagaagattgacatttttcag-aaactctaagtatttcaaagcatgatgtca 17403377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 188 - 323
Target Start/End: Original strand, 19878981 - 19879117
Alignment:
Q  188 tgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaat 286  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||  ||||  |||| ||| | ||| |||||||||||| |||||||| ||    
T  19878981 tgttttagaattctgtataggtgatttgcgacccgtttttcctatggaaaactactatttttacatagaaaataagttggaaagaaactaatcccacgat 19879080  T
Q  287 cagcactacttccatgtagacaaacgcttgtctccca 323  Q
    || |||| ||  ||||| |||||||||||||||||||    
T  19879081 caacactcctctcatgttgacaaacgcttgtctccca 19879117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 352 - 471
Target Start/End: Original strand, 26651281 - 26651400
Alignment:
Q  352 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 451  Q
    |||||||||||||| || ||||||||||||   |||||||||| ||||| ||| | |||||||||||| ||||| ||| |||||||||||||||||||||    
T  26651281 gctaagtccaacatatcgttgaaactccttaagttgaagaaaaaacttcgatttctgcaagagtaaaagtcaactaatattgaccacattaaatgaggct 26651380  T
Q  452 ggtgaaaataccagctaaca 471  Q
    ||||||| |||| |||||||    
T  26651381 ggtgaaattacctgctaaca 26651400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 67 - 323
Target Start/End: Original strand, 24543870 - 24544126
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| |||||||| |||| |  ||||||  |||| | || ||||||||||||||||||||||| | |||||||||||||| ||| | ||| | ||||||    
T  24543870 aagttaaaattgcaaaaacttgtaggaaaaataaattgcattgcattaaaaataaaggtggttccagaaatcctttacatatattatgtataaatctttt 24543969  T
Q  167 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaactcttattaatacaaag-atactaattt 264  Q
    ||||||| ||| ||||| || |||| |  || ||| |||| |||||||| ||||||||||| ||||||||||||  |||| ||||| || | | |||  |    
T  24543970 ctctcgcgccgatacttcgagtgttgt-caaatttctataagtgatttgtgacccgtttttcctatggaaaactactatttatacatagtaaaataa-ct 24544067  T
Q  265 ggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
    ||||| || | ||  |||| ||||||||| |||||||||| || | |||||||||||||    
T  24544068 ggaaaaaacctaactccacgatcagcacttcttccatgtaaactaccgcttgtctccca 24544126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 20478379 - 20478255
Alignment:
Q  100 aaatacaatgcattaaaaataaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaat 198  Q
    |||| |||| |||||||| |||||||||| | |||||||  |||||||||||||| ||| |||| |||| ||||| |||||| ||||| |||| ||||||    
T  20478379 aaatgcaattcattaaaattaaaggtggt-ctacaaatcagtttacatacattctgtataactcgtttccctcgcgccggtagtttgagtgttgtagaat 20478281  T
Q  199 tttgtataggtgatttgcgacccgtttt 226  Q
    | ||||||  ||||||||||||| ||||    
T  20478280 tatgtata--tgatttgcgacccatttt 20478255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 416 - 536
Target Start/End: Complemental strand, 25520118 - 25519999
Alignment:
Q  416 aaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaac 515  Q
    |||| ||||| |||||||||  ||||||||  | ||  |||||||||   ||||||||||||| ||||| |||||||||||||||| |||||||||| |     
T  25520118 aaaagtcaactaatgttgactgcattaaattggccttttgaaaatacagcctaacaaattgccacccaa-aaatgccattttcgactgaatataatcgaa 25520020  T
Q  516 ggagagaattgacatttttga 536  Q
    ||||| ||||| |||||||||    
T  25520019 ggagataattggcatttttga 25519999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 29891376 - 29891263
Alignment:
Q  115 aaaataaaggtggttcgacaaatcctt-tacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatt 213  Q
    |||||||| ||||||||||| |||  | |||||||||| | ||| | ||||||||||||| ||| |||||||| ||||||| || ||| |||| |||||     
T  29891376 aaaataaatgtggttcgacatatcagtgtacatacattttgtataaatcttttctctcgcgccgatactttgagtgttttataa-tttctataagtgatc 29891278  T
Q  214 tgcgacccgtttttc 228  Q
    |||||||||||||||    
T  29891277 tgcgacccgtttttc 29891263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 28760724 - 28760672
Alignment:
Q  119 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctct 170  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  28760724 taaaggtggttcgacaaatcagtttacatacattctatatgactcttttctct 28760672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1091 - 1135
Target Start/End: Original strand, 17403898 - 17403942
Alignment:
Q  1091 ccaagatttggaaatctcatgtacttattccatactctgtctctg 1135  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||    
T  17403898 ccaagatttagaaatctcaggtactcattccatactctgtctctg 17403942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 17162101 - 17162015
Alignment:
Q  82 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactcttttct 168  Q
    |||| ||||||||||||||| | || |||||||| | ||||||||| ||||||||||   ||||||||||||| ||||| ||||||||    
T  17162101 aaacttaaaggaaaggtaaattgcattgcattaata-taaaggtggctcgacaaatcagattacatacattctgtatgattcttttct 17162015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 17636690 - 17636791
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatc-ctttacatacattctttatgactcttt 165  Q
    |||||||||  |||||||| ||||| ||||||||| | |  ||||||||   ||||||||||||||||||||   ||||||||||| | |||||||||||    
T  17636690 aagtttaaaacgcagaaacttaaagaaaaggtaaattgccttgcattaatg-taaaggtggttcgacaaatcagattacatacattttgtatgactcttt 17636788  T
Q  166 tct 168  Q
    |||    
T  17636789 tct 17636791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 3e-85; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 43 - 310
Target Start/End: Complemental strand, 19218177 - 19217911
Alignment:
Q  43 ttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt 142  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19218177 ttttaaaagcaaagtaaaggcattaagtttaaattgtagaaacttaaaggaaatgtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt 19218078  T
Q  143 acatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactct 241  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||  |    
T  19218077 acatacattctttatggctcttttctctcgcgccggtactttgagtgttttagaa-tttgtataggtgatttgcgacccgttttccctatggaaaacagt 19217979  T
Q  242 tattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaa 310  Q
    |||| ||||| | | | |||  ||||||||||| |||||||| | ||||||| ||| ||||||||||||    
T  19217978 tatttatacataaaaaataa-ctggaaagaaactaatcccacgaccagcactcctttcatgtagacaaa 19217911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 57 - 315
Target Start/End: Complemental strand, 20064653 - 20064388
Alignment:
Q  57 ttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacataca 149  Q
    |||| |||||||||||||||||||||||| ||||| ||||  |||||| ||       ||||||||||||||||||||||| ||||||| ||||||||||    
T  20064653 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatataaatgcaagtgcattaaaaataaaggtggttcaacaaatcatttacataca 20064554  T
Q  150 ttctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttattaat 248  Q
    || ||||| |||||||||||| || |||||||||| | |||||||||||| |||||||| |||||||||||||||||  |||||||||||| ||||| ||    
T  20064553 ttttttataactcttttctcttgcaccggtactttcagtgttttagaattctgtataggcgatttgcgacccgttttccctatggaaaactattatttat 20064454  T
Q  249 acaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgctt 315  Q
    ||| ||  | |||  ||||||||||| |||||||||||||||||  ||||||||||||||| |||||    
T  20064453 acatagtaaataa-gtggaaagaaactaatcccacaatcagcacaccttccatgtagacaaccgctt 20064388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 57 - 323
Target Start/End: Original strand, 20060802 - 20061075
Alignment:
Q  57 ttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacataca 149  Q
    |||| |||||||||||||||||||||||| ||||| ||||  |||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  20060802 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataaaggtggttcgacaaatcctttacataca 20060901  T
Q  150 ttctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgt-ttttctatggaaaactcttattaat 248  Q
    || |||||||||||||||||| || |||||| ||  |||||||||||||| |||||||| ||||||| |||||| |   |||||||||||| | ||| ||    
T  20060902 ttgtttatgactcttttctcttgcgccggtagttcaaatgttttagaattctgtataggcgatttgcaacccgtctaccctatggaaaactatcatttat 20061001  T
Q  249 acaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
    ||| ||  | ||| || ||||||||| |||||||| |||| ||||  || |||||| |||| |||||||||||||    
T  20061002 acataggaagtaagtt-gaaagaaactaatcccacgatcatcactcattacatgtacacaatcgcttgtctccca 20061075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 108 - 323
Target Start/End: Original strand, 20713228 - 20713443
Alignment:
Q  108 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 207  Q
    |||||||||||||||||| |||| |||||||  |||||||||||||||||||||||||||||| ||  ||||| || || |||||||||||| ||||||     
T  20713228 tgcattaaaaataaaggttgttcaacaaatctgttacatacattctttatgactcttttctcttgcatcggtatttcgagtgttttagaattctgtatat 20713327  T
Q  208 gtgatttgcgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtaga 306  Q
    | |||||||||||||||||  |||||||||||| ||||| ||||| ||  | ||| || ||||||||| |||||||| ||||||||| ||||||||||||    
T  20713328 gcgatttgcgacccgttttccctatggaaaactattatttatacataggaaataagtt-gaaagaaactaatcccacgatcagcactccttccatgtaga 20713426  T
Q  307 caaacgcttgtctccca 323  Q
    ||| |||||||||||||    
T  20713427 caaccgcttgtctccca 20713443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 108 - 324
Target Start/End: Complemental strand, 23210240 - 23210024
Alignment:
Q  108 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 207  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| || |||||||||||| ||||||     
T  23210240 tgcattaaaaataaaagtggttcgacaaatcctttacatacattctttaagactcttttctcttgcgccggtacttcgagtgttttagaattatgtatat 23210141  T
Q  208 gtgatttgcgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtaga 306  Q
      ||||||||||| |||||  |||||| ||||| ||||| ||||| ||  | |||  ||||||||||| |||||||| |||| |||| ||||||| ||||    
T  23210140 acgatttgcgacctgttttccctatgggaaactattatttatacataggaaataa-gtggaaagaaactaatcccacgatcaacactccttccatttaga 23210042  T
Q  307 caaacgcttgtctcccat 324  Q
    ||| ||||||||||||||    
T  23210041 caaccgcttgtctcccat 23210024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 57 - 323
Target Start/End: Complemental strand, 20058824 - 20058550
Alignment:
Q  57 ttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacataca 149  Q
    |||| |||||||||||||||||||||||| ||||  |||   |||||||||       |||||||||||||||||||||||||||||| |||||||||||    
T  20058824 ttaatgcattaagtttaaattgcagaaacttaaataaaataaaaaatacaaatgcaattgcattaaaaataaaggtggttcgacaaattctttacataca 20058725  T
Q  150 ttctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttattaat 248  Q
    ||||||||||||||||||||| || |  ||||||||||||||||||||||||| ||||| ||||||| ||| || |  | ||||||||||| | ||| ||    
T  20058724 ttctttatgactcttttctcttgcgctagtactttgaatgttttagaattttgcataggcgatttgcaacctgtctaccttatggaaaactatcatttat 20058625  T
Q  249 acaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
    ||| ||  | ||| | | ||| |||| |||||||| ||||||||| |||||||| | |||| |||||||||||||    
T  20058624 acataggaagtaagtggaaaaaaaactaatcccacgatcagcactccttccatgcaaacaaccgcttgtctccca 20058550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 334 - 541
Target Start/End: Complemental strand, 20064265 - 20064063
Alignment:
Q  334 gcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttg 433  Q
    |||||||||||||| |  |||| |||||||||||| | ||| ||| ||||||||||||||||||||| ||||| |||||||||||| |||||  ||||||    
T  20064265 gcttcgagactttttac-gctaggtccaacatctcgtcgaa-ctcttttgattgaagaaaagacttcgattcctgcaagagtaaaagtcaactgatgttg 20064168  T
Q  434 accacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttt 533  Q
    ||||||||||| |||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||  ||   || |||| |||||| |||||||||||    
T  20064167 accacattaaacgaggctggtgaaaataacagctaacaaattgtcccccaa-aaatgtcattttcgaatga--ctactcaaaggagaggattgacatttt 20064071  T
Q  534 tgagaaaa 541  Q
    || |||||    
T  20064070 tgggaaaa 20064063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 108 - 321
Target Start/End: Original strand, 25951315 - 25951528
Alignment:
Q  108 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 207  Q
    |||||||| | ||||  |||||||||||||| ||||||||||||||||||||||||||||||||  | ||||||||||| |||||||||||| ||||||     
T  25951315 tgcattaagagtaaaattggttcgacaaatcttttacatacattctttatgactcttttctctctgt-cggtactttgagtgttttagaattatgtataa 25951413  T
Q  208 gtgatttgcgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtaga 306  Q
    | ||||| ||||| |||||  |||||||||||| ||||| |||||  |  | ||| | | |||||||| |||| ||| |||| |||| ||||||||||||    
T  25951414 gcgatttacgacctgttttacctatggaaaactattatttatacatcggaaataagtggaaaagaaactaatctcacgatcaacactccttccatgtaga 25951513  T
Q  307 caaacgcttgtctcc 321  Q
    ||| |||||||||||    
T  25951514 caaccgcttgtctcc 25951528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 352 - 472
Target Start/End: Original strand, 25951664 - 25951783
Alignment:
Q  352 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 451  Q
    ||||| |||||||| || ||||| |||||||||||  |||||||||||  ||||  |||||||||||| ||||| |||||||||||||||||||||||||    
T  25951664 gctaaatccaacatttcgttgaa-ctcctttgattagagaaaagactttgattcgtgcaagagtaaaagtcaactaatgttgaccacattaaatgaggct 25951762  T
Q  452 ggtgaaaataccagctaacaa 472  Q
    |||||||||||||||||||||    
T  25951763 ggtgaaaataccagctaacaa 25951783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 352 - 471
Target Start/End: Complemental strand, 20058418 - 20058300
Alignment:
Q  352 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 451  Q
    |||| |||||||||||| | ||| ||| ||||||||||||||||||||| ||||| |||||||||||| ||||| |||  ||||||||||||||||||||    
T  20058418 gctaggtccaacatctcgtcgaa-ctcttttgattgaagaaaagacttcgattcctgcaagagtaaaagtcaactaatactgaccacattaaatgaggct 20058320  T
Q  452 ggtgaaaataccagctaaca 471  Q
    |||||||||| |||||||||    
T  20058319 ggtgaaaatatcagctaaca 20058300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 374 - 472
Target Start/End: Original strand, 21165557 - 21165655
Alignment:
Q  374 aactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaa 472  Q
    ||||||||||||||||| |||||||||  |||| |||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||| |||||||||    
T  21165557 aactcctttgattgaaggaaagacttcgcttcctgcaagagtaaaagtcaactaatgttgaccacattaagtgaggctggtaaaaatactagctaacaa 21165655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 23379474 - 23379373
Alignment:
Q  139 ctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaa 237  Q
    ||||||||||||||||||||||||||||||||||| |  |||||| || |||||||||||| || |||||||||||||||||||||||  ||||||||||    
T  23379474 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgacccgttttccctatggaaaa 23379375  T
Q  238 ct 239  Q
    ||    
T  23379374 ct 23379373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 67 - 226
Target Start/End: Complemental strand, 17167433 - 17167275
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| || |||||| ||||| |||| |||| | || | |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  17167433 aagttaaaagtgtagaaacttaaagaaaagataaattgcattacattaaaaataaaggtggttcgacaaatcctttacatacattttgtattactctttt 17167334  T
Q  167 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt 226  Q
    ||||||| | |||||||    |||| ||||| ||| |||| |||||||| ||||||||||    
T  17167333 ctctcgcgctggtacttctggtgttgtagaa-tttctataagtgatttgggacccgtttt 17167275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 19924128 - 19924022
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| |||| |||| ||||| |||| |||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||    
T  19924128 aagttaaaagtgcataaacttaaagaaaagataaattacattgcattaaaaataaaggtggttcgacaaatcttttatatacattctgtataactctttt 19924029  T
Q  167 ctctcgc 173  Q
    |||||||    
T  19924028 ctctcgc 19924022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 23209893 - 23209772
Alignment:
Q  352 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 451  Q
    ||||| ||||||||||| | ||| |||||||| |||||||||| ||||| ||||| |||||||||||| ||||| | ||||||||||||||| |||||||    
T  23209893 gctaaatccaacatctcgtcgaa-ctcctttgtttgaagaaaatacttcgattcctgcaagagtaaaagtcaactattgttgaccacattaattgaggct 23209795  T
Q  452 ggtgaaaataccagctaacaaat 474  Q
    |||| ||||| ||||||| ||||    
T  23209794 ggtgcaaataacagctaataaat 23209772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 23355581 - 23355777
Alignment:
Q  19 tggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaa 118  Q
    ||||||| |||||  | ||||| |||||||| ||||||| |||| || ||||| ||||||||||||| ||||| |||| |||| | || ||||||||||     
T  23355581 tggcgtcattcgatgggaaaaacgttttaaatgcaaagtaaaggaataaagttaaaattgcagaaacataaagaaaagataaattgcattgcattaaaag 23355680  T
Q  119 taaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttg 215  Q
    ||||||||||  || ||||| |||||||| ||| | ||||||| ||||| ||  | |||||||||  | |||| ||||||| ||||||||| |||||    
T  23355681 taaaggtggtctgaaaaatcatttacatatattttgtatgactattttccctaacgccggtacttcaagtgttctagaattctgtataggtaatttg 23355777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 24878356 - 24878489
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    |||||||||  |||||||| ||||| |||| |||| | || |||||||||||||||||||||| ||||||||||||||||| |||   ||| ||||||||    
T  24878356 aagtttaaaacgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggtttgacaaatcctttacataaattacgtataactctttt 24878455  T
Q  167 ctctcgctccggtactttgaatgttttagaattt 200  Q
    |||||||  ||||| || || |||| ||||||||    
T  24878456 ctctcgcgtcggtaattcgagtgttgtagaattt 24878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 352 - 471
Target Start/End: Original strand, 20061207 - 20061323
Alignment:
Q  352 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 451  Q
    ||||||||||||||||| | ||| | ||||| ||||||||||| ||||| ||||| |||||||||||| ||||| |||| |||||| |||||| ||||||    
T  20061207 gctaagtccaacatctcgtcgaa-cacctttcattgaagaaaa-acttcgattcctgcaagagtaaaagtcaactaatggtgaccatattaaacgaggct 20061304  T
Q  452 ggtgaaaataccagctaaca 471  Q
    |||| |||||||||| ||||    
T  20061305 ggtg-aaataccagcaaaca 20061323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 67 - 173
Target Start/End: Complemental strand, 19926855 - 19926749
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| |||| |||| ||||| |||| |||| | || ||||||||||||||||||||||||||||||| ||||  |||||||| ||| ||| ||||    
T  19926855 aagttaaaagtgcataaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgacaaatcttttatttacattctgtataactatttt 19926756  T
Q  167 ctctcgc 173  Q
    |||||||    
T  19926755 ctctcgc 19926749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 17987487 - 17987619
Alignment:
Q  88 aaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatc-ctttacatacattctttatgactcttttctctcg-ctccggtactttg 185  Q
    |||||||||||||||| || |||||||||||||||||||| || |||||||  | |||||||||||| ||| |||| |||| || | |  ||||| ||||    
T  17987487 aaaggaaaggtaaaatgcattgcattaaaaataaaggtgg-tctacaaatcagtctacatacattctgtataactcgtttccctagacgtcggtagtttg 17987585  T
Q  186 aatgttttagaattttgtataggtgatttgcgaccc 221  Q
    | |||||||||||| ||||||  |||||||||||||    
T  17987586 agtgttttagaattctgtata--tgatttgcgaccc 17987619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 19217771 - 19217727
Alignment:
Q  427 aatgttgaccacattaaatgaggctggtgaaaataccagctaaca 471  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  19217771 aatgttgaccacattaaatgaggctggtgaaattaccagctaaca 19217727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 427 - 502
Target Start/End: Original strand, 17987914 - 17987988
Alignment:
Q  427 aatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacg 502  Q
    ||||||||||| |||||||||| |||  |||| ||| |||||||||| |||||||||| |||| ||||||||||||    
T  17987914 aatgttgaccatattaaatgagcctgtcgaaattacaagctaacaaaatgccccccaa-aaatcccattttcgacg 17987988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1093 - 1135
Target Start/End: Original strand, 24879513 - 24879555
Alignment:
Q  1093 aagatttggaaatctcatgtacttattccatactctgtctctg 1135  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  24879513 aagatttggaaatctcaggtactcattccatactctgtctctg 24879555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 425
Target Start/End: Original strand, 20713575 - 20713647
Alignment:
Q  352 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaac 425  Q
    ||||||||||| ||||| | ||| ||||||||||||||||||||||||  ||||| |||||| ||||| |||||    
T  20713575 gctaagtccaatatctcgtcgaa-ctcctttgattgaagaaaagactttgattcctgcaagaataaaagtcaac 20713647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 390 - 498
Target Start/End: Original strand, 24878782 - 24878889
Alignment:
Q  390 gaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaat 489  Q
    ||||||||||| ||||  ||||   ||||| ||||| |||||||||  ||||||||||| ||| ||||| |||  |||||||||||| ||||||| ||||    
T  24878782 gaaaagacttcgattcttgcaaagataaaagtcaactaatgttgactgcattaaatgagcctgttgaaattacaggctaacaaattgacccccaa-aaat 24878880  T
Q  490 gccattttc 498  Q
    | |||||||    
T  24878881 gtcattttc 24878889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 24878288 - 24878319
Alignment:
Q  19 tggcgtctttcgacagaaaaaaggttttaaaa 50  Q
    ||||||||||||||||||||||||||||||||    
T  24878288 tggcgtctttcgacagaaaaaaggttttaaaa 24878319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 31533102 - 31533052
Alignment:
Q  119 taaaggtggttcgacaaatcct-ttacatacattctttatgactcttttct 168  Q
    ||||||||||||||||||||   ||||||||||||| ||||||||||||||    
T  31533102 taaaggtggttcgacaaatcagattacatacattctctatgactcttttct 31533052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 392 - 502
Target Start/End: Original strand, 22011479 - 22011588
Alignment:
Q  392 aaagacttcaattcccgcaagagtaaaaa-tcaaccaa-tgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaat 489  Q
    |||| |||| ||||| |||| |||||||| |||||||| |||||||||||||||||||  ||| ||||| |||   |||||||| |||||||  | ||||    
T  22011479 aaagccttcgattcctgcaa-agtaaaaagtcaaccaaatgttgaccacattaaatgaatctgttgaaattacagactaacaaactgccccc--aaaaat 22011575  T
Q  490 gccattttcgacg 502  Q
    |||||||||||||    
T  22011576 gccattttcgacg 22011588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 4e-78; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 15686859 - 15687166
Alignment:
Q  17 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 116  Q
    |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15686859 tgtggcgtgtttcgatagaaaaagggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaagcaaaggtaaaatacaatgcattaaa 15686958  T
Q  117 aataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaat-gttttagaattttgtataggtgatttg 215  Q
    |||||||||||| | | |||||| || ||||||||||||| ||||||||||||||||  |||||||| || |  ||||||||||  ||||||||||||||    
T  15686959 aataaaggtggtcctaaaaatccatttcatacattctttaagactcttttctctcgcgtcggtacttcgagtatttttagaattcagtataggtgatttg 15687058  T
Q  216 cgacccgttt-ttctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgct 314  Q
    |||| |||||   |||||||||||||||||| ||||| ||| | |||  ||||||||||| |||||||| |||| |||| |||| |||||| ||| ||||    
T  15687059 cgactcgtttccactatggaaaactcttatttatacatagaaaataa-ctggaaagaaactaatcccacgatcatcactccttctatgtaggcaaccgct 15687157  T
Q  315 tgtctccca 323  Q
    |||||||||    
T  15687158 tgtctccca 15687166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 24 - 251
Target Start/End: Complemental strand, 24699275 - 24699049
Alignment:
Q  24 tctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaag 123  Q
    |||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  24699275 tctttcgacagaaaaagggtttcataagcaaagtaaaggcattaagtttaaattgcataaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 24699176  T
Q  124 gtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgt 223  Q
    |||||||||||||||||||| ||||||||||  ||| ||||||||||||| ||||||||| || |||||||||||| |||||||| ||||||||||||||    
T  24699175 gtggttcgacaaatcctttaaatacattctt--tgattcttttctctcgcgccggtacttcgagtgttttagaattctgtataggggatttgcgacccgt 24699078  T
Q  224 ttt-tctatggaaaactcttattaataca 251  Q
    |||  |||||||||||| ||||| |||||    
T  24699077 tttccctatggaaaactattatttataca 24699049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 26010836 - 26011055
Alignment:
Q  23 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaa---ttgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaat 119  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||||||||    |||||||||| |||||||||| ||||||||||||| ||||||||    
T  26010836 gtctttcgacagaaaag-gtttttaaaagcaaagtaaaggcattaagtttaataacttgcagaaacttaaaggaaagataaaatacaatgctttaaaaat 26010934  T
Q  120 aaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgac 219  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| || ||||||||||||  ||||||||||||||||||    
T  26010935 aaaggtggttcgacaaatcatttacatacattctttatgactctattctctcgcgccggtacttcgagtgttttagaattcggtataggtgatttgcgac 26011034  T
Q  220 ccgtttt-tctatggaaaact 239  Q
    | |||||  ||||||||||||    
T  26011035 ctgttttccctatggaaaact 26011055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 13428914 - 13428733
Alignment:
Q  36 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaa 135  Q
    |||| ||||||||||||||||| || |||||||||||||||||||||||  |||||||||| |||||||||||||||||| |||||| ||||||| ||||    
T  13428914 aaaagggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaatttaaaggaaagataaaatacaatgcattaataataaatgtggttcaacaa 13428815  T
Q  136 atcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgac 219  Q
    |||||||||||||||||||||| ||||||||||||| |  |||||||| || ||||||||||  || |||||||||||||||||    
T  13428814 atcctttacatacattctttattactcttttctctcacgtcggtacttcgagtgttttagaa--ttatataggtgatttgcgac 13428733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 391 - 569
Target Start/End: Complemental strand, 9033225 - 9033046
Alignment:
Q  391 aaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaatt--gccccccaagaaa 488  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||  | ||||||| |||    
T  9033225 aaaagacttcaattcctgcaagagtaaaagtcaactaatgttgaccatattaaatgaggctggtgaaaataccagctaacaaattgggacccccaa-aaa 9033127  T
Q  489 tgccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgatgtcac 569  Q
    ||||||||||||| |||||||||||| |||| |||||| |||||||| |||||    ||||||| ||||||||||||||||    
T  9033126 tgccattttcgactgaatataatcaaaggagggaattggcatttttgggaaaaattaaagtattccaaagcatgatgtcac 9033046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 4765916 - 4765605
Alignment:
Q  19 tggcgtctttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 116  Q
    |||||||||||||||  |||| |||||| ||||||||||| ||||||||||||||||| ||||| |||| |||||||||  |||| ||||||||||||||    
T  4765916 tggcgtctttcgacatgaaaagggtttttaaaagcaaagtaaaggcattaagtttaaaattgcataaacttaaaggaaaaataaagtacaatgcattaaa 4765817  T
Q  117 aataaaggtggttcgacaaatcctttacatac----attctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgat 212  Q
    | |||||||||||||||||||| |||||||||    ||||||||||||||||||||||||| |  |||| |  | |||||||||||  | ||||||||||    
T  4765816 agtaaaggtggttcgacaaatcatttacatacattaattctttatgactcttttctctcgcgctagtacatcaagtgttttagaatactatataggtgat 4765717  T
Q  213 ttgcgacccgttttt-ctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaac 311  Q
    ||||||||| ||||| ||||||||||||  |||| ||||| ||| | ||| | | | |   || |||||||| |||  |||| |||||||||||||||      
T  4765716 ttgcgacccatttttcctatggaaaactactatttatacatagaaaataactagaacaagtac-aatcccacgatctacacttcttccatgtagacaact 4765618  T
Q  312 gcttgtctcccat 324  Q
    |||||||||||||    
T  4765617 gcttgtctcccat 4765605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 4769742 - 4769937
Alignment:
Q  44 tttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttta 143  Q
    |||||||||||||| ||||||||||||||||||| || |||| ||||||||||   ||||||||||||||| ||||||||||||||||| |||| | |||    
T  4769742 tttaaaagcaaagtaaaggcattaagtttaaatttcataaacttaaaggaaagaataaatacaatgcattagaaataaaggtggttcgaaaaattcgtta 4769841  T
Q  144 catacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaact 239  Q
    ||||||||||||||||||||||||||| || | |||| || || |||||||||||| ||||||| ||||||| ||| | |||  ||||||||||||    
T  4769842 catacattctttatgactcttttctcttgcgctggtatttcgagtgttttagaattatgtatagatgatttgggacgcttttccctatggaaaact 4769937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 108 - 323
Target Start/End: Original strand, 7148790 - 7149005
Alignment:
Q  108 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 207  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||  | | |||||||||| |||||||    
T  7148790 tgcattaaaagtaaaagtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtacttcaactattttagaattctgtatag 7148889  T
Q  208 gtgatttgcgaccc-gtttttctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtaga 306  Q
    |  ||||| ||||| ||||| ||||||||||||  |||| ||||| ||  | ||| |||||||||||| |||||||| |||| |||| ||||||||||||    
T  7148890 gcaatttgtgacccggttttcctatggaaaactactatttatacataggaaataa-ttggaaagaaactaatcccacgatcaacactccttccatgtaga 7148988  T
Q  307 caaacgcttgtctccca 323  Q
    ||| | |||||||||||    
T  7148989 caaccacttgtctccca 7149005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 4832740 - 4832516
Alignment:
Q  17 tgtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaa 115  Q
    |||| |||||||||| |||||||||| |||| ||||||| || ||| |||||||||||||||||| ||||  ||||||||  ||||||||||||||||||    
T  4832740 tgtgacgtctttcgaaagaaaaaagggtttttaaagcaaggtaaagacattaagtttaaattgcataaactcaaaggaaaattaaaatacaatgcattaa 4832641  T
Q  116 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttg 215  Q
    | ||||||||||| |  || |||||||| ||| ||||||| ||||||||||||||| | ||  | ||| || |||||||||||| |||||||||||||||    
T  4832640 atataaaggtggtccagcagatcctttaaatatattctttgtgactcttttctctcacaccaatgcttcgagtgttttagaattctgtataggtgatttg 4832541  T
Q  216 cgacccgtttt-tctatggaaaact 239  Q
    ||| || ||||  ||||||||||||    
T  4832540 cgatccattttccctatggaaaact 4832516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 100 - 323
Target Start/End: Complemental strand, 9033622 - 9033398
Alignment:
Q  100 aaatacaa-tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgtttt-agaa 197  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||  |||||||| || ||| ||||| || |||||| | ||    
T  9033622 aaatacaagtgcattaaaaataaaggtggtttgacaaatcctttacatacattctttgtgaccattttctcttgcgccgatacttcgagtgttttgaaaa 9033523  T
Q  198 ttttgtataggtgatttgcgacccgtttttctatggaaaactcttattaataca-aagatactaatttggaaagaaacgaatcccacaatcagcactact 296  Q
    || |||||||| ||| ||||||||||||| |||||||||||| ||||| ||||| |||| | |||  ||||||||||| |||| ||| |||| |||| |     
T  9033522 ttctgtataggcgatatgcgacccgttttcctatggaaaactattatttatacataaga-aataa-gtggaaagaaactaatcacacgatcaacactccc 9033425  T
Q  297 tccatgtagacaaacgcttgtctccca 323  Q
    ||||||||||||| ||||||| |||||    
T  9033424 tccatgtagacaaccgcttgtatccca 9033398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 111 - 323
Target Start/End: Complemental strand, 29614724 - 29614512
Alignment:
Q  111 attaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgtt-ttagaattttgtataggt 209  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |   |||||||| || |||| |||||||| | ||||||     
T  29614724 attaaaaataaaggtggttcgacaaatcctttacatacattatttatgactcttttctcttgtgtcggtacttcgagtgttcttagaattatatataggc 29614625  T
Q  210 gatttgcgacccgtttt-tctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagaca 308  Q
    |||||||||||| ||||  |||||||||||| || || ||||| ||  | |||  || |||||||| |||||||||||||||||| ||||||||||||||    
T  29614624 gatttgcgacccattttccctatggaaaactatt-tttatacataggaaataa-atgaaaagaaactaatcccacaatcagcactccttccatgtagaca 29614527  T
Q  309 aacgcttgtctccca 323  Q
    |  ||||||| ||||    
T  29614526 actgcttgtcgccca 29614512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 23378488 - 23378631
Alignment:
Q  73 aaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcga-caaatcctttacatacattctttatgactcttttctctc 171  Q
    |||||| |||||| |||||||||| |||| | || ||||||||||||||||||||||| | ||||||||||||||||||| | |||||||||||||||||    
T  23378488 aaattgtagaaacttaaaggaaagataaattgcattgcattaaaaataaaggtggttcaaacaaatcctttacatacattatgtatgactcttttctctc 23378587  T
Q  172 gctccggtactttgaatgttttagaattttgtataggtgatttg 215  Q
    || ||| ||||| || | ||||||||||||||||| ||||||||    
T  23378588 gcgccgatacttcgagtattttagaattttgtataagtgatttg 23378631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 350 - 539
Target Start/End: Complemental strand, 4765475 - 4765286
Alignment:
Q  350 atgctaagtccaacatctctttgaaactcctttgattgaag-aaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgag 448  Q
    |||||||||||||||| || | ||||||||||   |||||| |||| ||||| ||||| |||||||||||| ||||| |||||||| |||||||||||||    
T  4765475 atgctaagtccaacatttcgtcgaaactccttaagttgaaggaaaaaacttcgattcctgcaagagtaaaagtcaactaatgttgatcacattaaatgag 4765376  T
Q  449 gctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttgagaa 539  Q
    |||||||||||| ||| |||||||||| | |||||| |||||||||||||||| ||| | | |  | |||||||||||  |||||||||||    
T  4765375 gctggtgaaaattccaactaacaaattacaccccaa-aaatgccattttcgactgaacaaattagaaggagagaattggtatttttgagaa 4765286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 355 - 568
Target Start/End: Original strand, 4770096 - 4770307
Alignment:
Q  355 aagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggt 454  Q
    |||||||||||||| |  ||| |||||   |||||||||||||| | ||||| |||||  ||||| | ||| ||||||| |||||||||| ||| ||| |    
T  4770096 aagtccaacatctcgtcaaaattccttatgttgaagaaaagactacgattcctgcaaggataaaagtaaacgaatgttggccacattaaacgagtctgtt 4770195  T
Q  455 gaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttc 554  Q
     ||| ||||||||||||| || ||||||  ||||||||||||||||| |||| || || | ||||||||||| ||||||| || |||| |||||||||||    
T  4770196 aaaattaccagctaacaatttacccccc-tgaaatgccattttcgactgaatctattcgaaggagagaattggcattttttag-aaactctaagtatttc 4770293  T
Q  555 aaagcatgatgtca 568  Q
    ||||||||||||||    
T  4770294 aaagcatgatgtca 4770307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 16243069 - 16242937
Alignment:
Q  108 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 207  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||| || |||||||||||  |||| ||    
T  16243069 tgcattaaaaataaaagtggttcgacaaatgctttacatacattctttatgactcttttctctcgcgttggtacttcgagtgttttagaatcctgtagag 16242970  T
Q  208 gtgatttgcgacccgtttt-tctatggaaaact 239  Q
    |  |||| |||| ||||||  ||||||||||||    
T  16242969 gaaatttacgactcgttttccctatggaaaact 16242937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 352 - 470
Target Start/End: Complemental strand, 24698845 - 24698727
Alignment:
Q  352 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct 451  Q
    |||||||| |||||||| | ||||||||||   ||||||||||||||||||||||  ||| ||||||| ||||| ||||||||| | ||||||||||| |    
T  24698845 gctaagtctaacatctcgtcgaaactccttatgttgaagaaaagacttcaattcctccaatagtaaaagtcaactaatgttgactaaattaaatgaggtt 24698746  T
Q  452 ggtgaaaataccagctaac 470  Q
    ||||||| || ||||||||    
T  24698745 ggtgaaattatcagctaac 24698727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 391 - 471
Target Start/End: Original strand, 15687340 - 15687420
Alignment:
Q  391 aaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaaca 471  Q
    |||||||||  |||||  ||||||||||| ||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  15687340 aaaagactttgattcctacaagagtaaaagtcaactaatgttgaccacattaaatgaggctggtgaacttaccagctaaca 15687420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 376 - 469
Target Start/End: Complemental strand, 16242699 - 16242605
Alignment:
Q  376 ctcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatc-aaccaatgttgaccacattaaatgaggctggtgaaaataccagctaa 469  Q
    ||||||||||||| |||||||||||  |||| |||| ||||| | || ||| ||||||||||||||||||||||| || ||||||||||||||||    
T  16242699 ctcctttgattgaggaaaagacttcgcttcctgcaaaagtaacagtctaactaatgttgaccacattaaatgaggttgatgaaaataccagctaa 16242605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 27304547 - 27304424
Alignment:
Q  77 tgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctcc 176  Q
    ||||||||| ||||| |||  |||| | || ||||||||||||||| |||||| ||||||| || |||||||||| | ||| | ||||||||||||  ||    
T  27304547 tgcagaaacttaaagaaaatataaattgcattgcattaaaaataaaagtggtttgacaaattctatacatacattttgtataattcttttctctcgagcc 27304448  T
Q  177 ggtactttgaatgttttagaattt 200  Q
    | |||||||| |||| ||||||||    
T  27304447 gatactttgagtgttgtagaattt 27304424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 408 - 471
Target Start/End: Complemental strand, 29614100 - 29614037
Alignment:
Q  408 gcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaaca 471  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||| ||||||||| |||||||||    
T  29614100 gcaagagtaaaagtcaactaatattgaccacattaaatgaggctagtgaaaatagcagctaaca 29614037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 350 - 458
Target Start/End: Complemental strand, 4832300 - 4832190
Alignment:
Q  350 atgctaagtccaacatctctttgaaactcctttgattgaag-aaaagacttcaattcccgc-aagagtaaaaatcaaccaatgttgaccacattaaatga 447  Q
    ||||||||||||||||||| |  ||||||||    || ||| |||||||||| ||||| || ||||  |||| ||||| ||||||||||| |||||||||    
T  4832300 atgctaagtccaacatctcgtcaaaactcctcaagttcaagaaaaagacttcgattcctgcaaagataaaaagtcaactaatgttgaccatattaaatga 4832201  T
Q  448 ggctggtgaaa 458  Q
    |||||||||||    
T  4832200 ggctggtgaaa 4832190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 8737308 - 8737234
Alignment:
Q  77 tgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacatt 151  Q
    ||||||||  ||||| |||| |||| | || |||||| |||||||||||||||| ||||||||||||||| ||||    
T  8737308 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 8737234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 9089546 - 9089472
Alignment:
Q  77 tgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacatt 151  Q
    ||||||||  ||||| |||| |||| | || |||||| |||||||||||||||| ||||||||||||||| ||||    
T  9089546 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 9089472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 13409833 - 13409879
Alignment:
Q  82 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggt 128  Q
    |||| ||||||||||||||||| || |||||||||||||||||||||    
T  13409833 aaacttaaaggaaaggtaaaatgcattgcattaaaaataaaggtggt 13409879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 421 - 471
Target Start/End: Complemental strand, 13428456 - 13428406
Alignment:
Q  421 tcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaaca 471  Q
    ||||| ||||| |||| ||||||| ||||||||||||| ||||||||||||    
T  13428456 tcaactaatgtcgaccgcattaaacgaggctggtgaaattaccagctaaca 13428406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 1e-75; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 22397777 - 22397548
Alignment:
Q  17 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaa-ggaaaggtaaaatacaatgcattaa 115  Q
    ||||||||||||||||| ||||||||||||||||| |||||    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  22397777 tgtggcgtctttcgacaaaaaaaaggttttaaaagaaaagtct--gcattaagtttaaattgcagaaacttaaaaggaaaggtaaaatacaatgcattaa 22397680  T
Q  116 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatg-ttttagaattttgtataggtgattt 214  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || || |||||||||| ||||||||||||||    
T  22397679 aaataaaggttgttcgacaaatcctttacatacattctttatgactattttctctcgcgccggtacttcgagtgtttttagaattctgtataggtgattt 22397580  T
Q  215 gcgacccgtttt-tctatggaaaactcttatt 245  Q
    ||||||||||||  ||| ||||||||||||||    
T  22397579 gcgacccgttttccctacggaaaactcttatt 22397548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 108 - 323
Target Start/End: Original strand, 16177304 - 16177519
Alignment:
Q  108 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtatag 207  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||      ||||||| || ||||||||||||||||||||    
T  16177304 tgcattaaaaataaatgtggttcgaaaaatcctttacatacattctttatgactcttttctcttatgttggtacttcgagtgttttagaattttgtatag 16177403  T
Q  208 gtgatttgcgacccgtttttc-tatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtaga 306  Q
    || |||||||||||||||| | |||||||||||  |||| ||||| ||| | ||| | |||||||||| |||||||||||||||||| ||||||||||||    
T  16177404 gttatttgcgacccgttttccatatggaaaactaatatttatacatagaaaataagt-ggaaagaaactaatcccacaatcagcactccttccatgtaga 16177502  T
Q  307 caaacgcttgtctccca 323  Q
    ||| |||||||||||||    
T  16177503 caaccgcttgtctccca 16177519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 112 - 324
Target Start/End: Original strand, 15830026 - 15830238
Alignment:
Q  112 ttaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtga 211  Q
    ||||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||| | | | |||||||| |||||||||||| |||||||| ||    
T  15830026 ttaaaaataaaagtgattcgacaaatcttttacatacattatttatgactcttttctctcacactgatactttgagtgttttagaattctgtataggcga 15830125  T
Q  212 tttgcgacccgtttttc-tatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaa 310  Q
    ||||||||||||||| | |||| |||||| ||||| ||||| ||| | |||  ||||||||||| ||||||| ||| ||||||  ||||||||||||||     
T  15830126 tttgcgacccgttttccttatgcaaaactattatttatacatagaaaataa-gtggaaagaaactaatcccataattagcactctttccatgtagacaac 15830224  T
Q  311 cgcttgtctcccat 324  Q
     | |||||||||||    
T  15830225 tgtttgtctcccat 15830238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 355 - 568
Target Start/End: Original strand, 17525233 - 17525444
Alignment:
Q  355 aagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggt 454  Q
    ||||| |||||||| |||||||| |||   ||||||||||| |||| |||||   | |||||||| ||||| |||||||||||||||||||||| |||||    
T  17525233 aagtctaacatctcgttgaaacttcttaagttgaagaaaaggcttcgattcctagaggagtaaaagtcaactaatgttgaccacattaaatgagactggt 17525332  T
Q  455 gaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttc 554  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||||  |||||| |||| |||||||||    |||||||| ||||| ||||||||||     
T  17525333 gaaattaccagctaacaaattgccccccaa-aaatgctattttcgacaaaatatattcaaaggagagaatcagaatttttga-aaaactctaagtattta 17525430  T
Q  555 aaagcatgatgtca 568  Q
    ||||||||||||||    
T  17525431 aaagcatgatgtca 17525444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 17524797 - 17524998
Alignment:
Q  26 tttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaag 123  Q
    |||||| | |||||||||||| |||| |||||| |||| ||||| |||||| ||| |||||| ||||| |||  |||| || ||||||||||||||||||    
T  17524797 tttcgataaaaaaaaggtttttaaaaacaaagtaaaggaattaattttaaaattgtagaaacttaaagaaaaaataaattataatgcattaaaaataaag 17524896  T
Q  124 gtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgt 223  Q
    || || |||||| ||||||| ||||||||||||||||||||||||||| | || | |||| || |||||||||||| |||||||||||||||||||| ||    
T  17524897 gttgtccgacaa-tcctttaaatacattctttatgactcttttctctcacgccagcacttcgagtgttttagaattatgtataggtgatttgcgacctgt 17524995  T
Q  224 ttt 226  Q
    |||    
T  17524996 ttt 17524998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 1177349 - 1177214
Alignment:
Q  108 tgcattaaaaataaaggtggttcgacaaatcctttacatacat----tctttatgactcttttctctcgctccggtactttgaatgttttagaattttgt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |  |||||| || |||||||||||| |||    
T  1177349 tgcattaaaaataaaggtggttcgacaaatcctttacatacatgtattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgt 1177250  T
Q  204 ataggtgatttgcgacccgtttttctatggaaaact 239  Q
    |||| ||||||||| || ||||| ||||| ||||||    
T  1177249 atagatgatttgcgtcctgttttcctatgcaaaact 1177214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 410 - 538
Target Start/End: Complemental strand, 31125872 - 31125745
Alignment:
Q  410 aagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatata 509  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| || |||||  |||||| || |||||||    
T  31125872 aagagtaaaagtcaactaatgttgaccacattaaatgaggatggtgaaaatatcagctaaaaaattgccccctaa-aaatgaaattttctactgaatata 31125774  T
Q  510 atcaacggagagaattgacatttttgaga 538  Q
     |||| ||||||||||| |||||||||||    
T  31125773 ttcaaaggagagaattggcatttttgaga 31125745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 18713709 - 18713842
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| ||||||||| ||||| || | |||| | || ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  18713709 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactctttt 18713808  T
Q  167 ctctcgctccggtactttgaatgttttagaattt 200  Q
    ||||||   ||||||||||| |||| ||||||||    
T  18713809 ctctcgtgacggtactttgagtgttatagaattt 18713842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 17948023 - 17947890
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| |||| |||| |||||||||| |||| | || || ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||     
T  17948023 aagttaaaaatgcataaacttaaaggaaagataaattgcattgaattaaaaataaaggtggttcgacaaatcctttacatacattttatataactctttc 17947924  T
Q  167 ctctcgctccggtactttgaatgttttagaattt 200  Q
    |||| || ||| ||||| ||||||| ||||||||    
T  17947923 ctcttgcgccgttacttcgaatgttgtagaattt 17947890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 14763090 - 14762985
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| ||||||||| ||||| |||| |||| | || ||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||    
T  14763090 aagttaaaagtgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgagaactcctttacatacattctgtataactctttt 14762991  T
Q  167 ctctcg 172  Q
    ||||||    
T  14762990 ctctcg 14762985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 57 - 323
Target Start/End: Complemental strand, 31126351 - 31126065
Alignment:
Q  57 ttaaggcattaagttt-aaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacatac 148  Q
    |||| ||||||||||| |||||||||||||  |||| ||||  |||||||||       ||||||| |||||||||||||||| ||||||||||||||||    
T  31126351 ttaatgcattaagttttaaattgcagaaactcaaagaaaagaaaaaatacaaatgcaagtgcattataaataaaggtggttcggcaaatcctttacatac 31126252  T
Q  149 attct------------ttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaa 235  Q
    ||| |            ||||||||||||||||| ||   | ||||| || ||||||||||||   |||||| |||||| ||||||||||  ||| ||||    
T  31126251 attttaaaatatgagatttatgactcttttctcttgcgttgttacttcgagtgttttagaattccatataggagatttgagacccgttttccctaaggaa 31126152  T
Q  236 aactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
    |||| ||||| ||||| ||  | |||  ||||||||||| |||||||  || |||||| ||||||||||||||| |||||||||||||    
T  31126151 aactattatttatacataggaaataa-gtggaaagaaactaatcccaagattagcactccttccatgtagacaatcgcttgtctccca 31126065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 391 - 565
Target Start/End: Complemental strand, 22394179 - 22394009
Alignment:
Q  391 aaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatg 490  Q
    |||||||||  ||||| ||||||||||||   ||| ||||||||||||||||||  |||||||||||| ||||| |||||| |||||||||||| |||||    
T  22394179 aaaagactttgattcctgcaagagtaaaacggaactaatgttgaccacattaaa--aggctggtgaaattaccaactaacagattgccccccaa-aaatg 22394083  T
Q  491 ccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgatg 565  Q
     ||||||||||  ||| || |  | ||||| |||||  ||||||||| |||| ||||||||| || |||||||||    
T  22394082 tcattttcgacaaaatctatttgaaggagataattggaatttttgag-aaactctaagtattccagagcatgatg 22394009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 387 - 471
Target Start/End: Original strand, 16177672 - 16177759
Alignment:
Q  387 gaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggct---ggtgaaaataccagctaaca 471  Q
    |||||||||||||  |||||  ||||||||||| ||||| |||||| ||||||||||||||||||   ||||||||||||||||||||    
T  16177672 gaagaaaagactttgattcctacaagagtaaaagtcaactaatgttaaccacattaaatgaggctggaggtgaaaataccagctaaca 16177759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 28712360 - 28712461
Alignment:
Q  69 gtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactcttttc 167  Q
    |||||||  |||||||| ||||| ||||||||| |||| ||||||||   ||||||||||||||||||||   ||||||||||| | |||||||||||||    
T  28712360 gtttaaaacgcagaaacttaaagaaaaggtaaattacattgcattaatg-taaaggtggttcgacaaatcagattacatacattatatatgactcttttc 28712458  T
Q  168 tct 170  Q
    |||    
T  28712459 tct 28712461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 353 - 430
Target Start/End: Complemental strand, 1176994 - 1176918
Alignment:
Q  353 ctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatg 430  Q
    |||| ||||||||||| ||||| ||||||| ||||||||||||| ||| ||||| |||||||||||| ||||| ||||    
T  1176994 ctaaatccaacatctcgttgaa-ctccttttattgaagaaaagatttcgattcctgcaagagtaaaagtcaactaatg 1176918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 13002906 - 13002854
Alignment:
Q  119 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttctct 170  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  13002906 taaaggtggttcgacaaatcagtttacatacattctgtatgactcttttctct 13002854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 25945846 - 25945916
Alignment:
Q  82 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatc-ctttacatacattc 152  Q
    |||| ||||||| ||||||||| || |||||||||||||||||||| || |||||||  |||||||||||||    
T  25945846 aaacttaaaggagaggtaaaatgcattgcattaaaaataaaggtgg-tctacaaatcagtttacatacattc 25945916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 374 - 460
Target Start/End: Original strand, 32784447 - 32784534
Alignment:
Q  374 aactcctttgattgaagaaaa-gacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaat 460  Q
    |||||| ||||||| |||||| || ||||||||| | || ||||||| ||||| ||| || ||||||||||||||| ||| |||||||    
T  32784447 aactccattgattgtagaaaaagatttcaattcctgtaaaagtaaaagtcaactaatattaaccacattaaatgagactgatgaaaat 32784534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 24154229 - 24154179
Alignment:
Q  119 taaaggtggttcgacaaatcc-tttacatacattctttatgactcttttct 168  Q
    ||||||||||||||||||||  |||||||||||| | ||||||||||||||    
T  24154229 taaaggtggttcgacaaatcagtttacatacattttgtatgactcttttct 24154179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 10163317 - 10163272
Alignment:
Q  126 ggttcgacaaatcc-tttacatacattctttatgactcttttctct 170  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||    
T  10163317 ggttcgacaaatcagtttacatacattctatatgactcttttctct 10163272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 6e-68; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 11361595 - 11361830
Alignment:
Q  17 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 116  Q
    ||||| |||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  11361595 tgtggtgtcttttgacaggaaaaaagttttaaaagcaaagtaaaggcattaagtttaaattgcagaaatttaaatgaaaggtaaaatacaatgcattaaa 11361694  T
Q  117 aataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgc 216  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||  |||||  | || |||||||||||| |||||||||||| | |    
T  11361695 aataaaggtggttcgacaaatcctttacatacattctttgtaactcttttccctcgcgtcggtaagtcgagtgttttagaattctgtataggtgatctac 11361794  T
Q  217 gacccgtttt-tctatggaaaactcttattaataca 251  Q
    |||| |||||  ||| |||||||||||||| |||||    
T  11361795 gacctgttttccctacggaaaactcttatttataca 11361830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 9409370 - 9409168
Alignment:
Q  24 tctttcgacagaaaaaaggttttaaaa-gcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaa 122  Q
    |||| ||||||||||  |||||||||| ||||||| || | ||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||    
T  9409370 tcttacgacagaaaaggggttttaaaaagcaaagtaaaagtattaagtttaaattgcataaacttaaaggaaagataaaatacaatgcattaaaaataaa 9409271  T
Q  123 ggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccg 222  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||| || |||||||||||| | |||| |||||||||||||||    
T  9409270 ggtggttcgacaaatcctttacatacattctttataacttttttctcttgcgccggtacttcgagtgttttagaattctatataagtgatttgcgacccg 9409171  T
Q  223 ttt 225  Q
    |||    
T  9409170 ttt 9409168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 329 - 472
Target Start/End: Original strand, 11362017 - 11362160
Alignment:
Q  329 ttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaa 428  Q
    |||||||||||||| ||||  ||||||||||||||||||| ||||||||||||   ||||||||||||||||||| || |||||||||||| ||||| ||    
T  11362017 ttaaggcttcgagaatttttcatgctaagtccaacatctcgttgaaactccttaagttgaagaaaagacttcaatacctgcaagagtaaaagtcaactaa 11362116  T
Q  429 tgttgaccacattaaatgaggctggtgaaaataccagctaacaa 472  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  11362117 tgttgaccactttaaatgaggctggtgaaaataccagctaacaa 11362160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 16675086 - 16675259
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatc-ctttacatacattctttatgactcttt 165  Q
    ||||||||| ||||||||| ||||| ||||||||| |  | |||||| |||||||| |||||||||||||||  |||||||||||||| ||| ||||| |    
T  16675086 aagtttaaaatgcagaaacataaagaaaaggtaaattgtattgcatttaaaataaaagtggttcgacaaatcattttacatacattctgtataactctct 16675185  T
Q  166 tctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaact 239  Q
    |||||||| ||||||||| || |||||||||| | | |||| | |||||| |||||||||||| |||||||||||    
T  16675186 tctctcgcaccggtacttcgagtgttttagaa-tatctataagggatttgtgacccgtttttcatatggaaaact 16675259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 5358040 - 5358102
Alignment:
Q  108 tgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctct 170  Q
    |||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||    
T  5358040 tgcattaaaaataaaggtagttcgacaaatcatttacatacattatgtatgactcttttctct 5358102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 4697454 - 4697626
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactcttt 165  Q
    |||||||||  ||| |||| ||||| ||||||||| |  | |||||||||  ||||||||||||||| ||||   ||||||||||| | ||| ||| | |    
T  4697454 aagtttaaaacgcataaacttaaagaaaaggtaaattgtattgcattaaag-taaaggtggttcgacgaatcagattacatacattttgtataactttgt 4697552  T
Q  166 tctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaact 239  Q
    |||||| | ||||| |||||| |||||||||| ||| |||| |||||||||||| | |||| | |||||||||||    
T  4697553 tctctcacgccggtgctttgagtgttttagaa-tttctataagtgatttgcgactcattttccatatggaaaact 4697626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 18558516 - 18558469
Alignment:
Q  82 aaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggtt 129  Q
    |||| ||||||||| ||||||| || ||||||||||||||||||||||    
T  18558516 aaacttaaaggaaatgtaaaatgcattgcattaaaaataaaggtggtt 18558469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 26654195 - 26654144
Alignment:
Q  120 aaaggtggttcgacaaatcct-ttacatacattctttatgactcttttctct 170  Q
    ||||||||||||||||||| | ||||||||||| | ||||||||||||||||    
T  26654195 aaaggtggttcgacaaatcatattacatacattatgtatgactcttttctct 26654144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 10071001 - 10071078
Alignment:
Q  427 aatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaa 505  Q
    ||||||||||| |||||||||| |||  |||| |||  ||||||||| | |||||||| |||||| |||||||||||||    
T  10071001 aatgttgaccatattaaatgagcctgtcgaaattacaggctaacaaaattccccccaa-aaatgcaattttcgacggaa 10071078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 1e-65; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 62 - 323
Target Start/End: Original strand, 20146169 - 20146437
Alignment:
Q  62 gcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtggttcgacaaatcctttacatacattctt 154  Q
    |||||||||||||||||||||||| ||||| ||||| |||||| ||       |||||||||||||||| |||| | | ||||||||||||||||| |||    
T  20146169 gcattaagtttaaattgcagaaacttaaagaaaaggaaaaataaaaatgcaagtgcattaaaaataaagatggtccaaaaaatcctttacatacat-ctt 20146267  T
Q  155 tatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttc-tatggaaaactcttattaatacaaa 253  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |||||||    
T  20146268 tatgactcttttctctcgcaccggtactttgagtgttttagaattttgtataggtgatttgcgacccattttccatatggaaaactcttatttatacaaa 20146367  T
Q  254 gatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
    |  | ||| |||||||||||| | |||||| |||| |||| |||| |||||||||| | |||||||||||    
T  20146368 gcaaataacttggaaagaaactagtcccacgatcaacactccttctatgtagacaatcacttgtctccca 20146437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 43 - 323
Target Start/End: Complemental strand, 11014027 - 11013745
Alignment:
Q  43 ttttaaaagcaaagttaaggcattaagtttaaa-ttgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctt 141  Q
    ||||||||||||||| ||||||||||||||||| || | ||||| |||||||||  |||| ||||||||||||||||||||||||| |||||||||||||    
T  11014027 ttttaaaagcaaagtaaaggcattaagtttaaaattcctgaaacttaaaggaaaaataaagtacaatgcattaaaaataaaggtggctcgacaaatcctt 11013928  T
Q  142 tacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactc 240  Q
    |||||| |||||||||||||||||||||||   | |||| || || ||||||| ||||||||||||||||||||| |||| ||||  |||||||||||||    
T  11013927 tacatatattctttatgactcttttctctcaagctggtatttcgagtgttttaaaattttgtataggtgatttgcaacccattttacctatggaaaactc 11013828  T
Q  241 ttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
     |||  ||||| ||| |   |  |||||| |    |||||||| ||||||||| ||||||||||||||| | |||||||||||    
T  11013827 ctatatatacatagaaaaataactggaaaaagtacaatcccacgatcagcacttcttccatgtagacaaccacttgtctccca 11013745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 73 - 323
Target Start/End: Original strand, 33103021 - 33103273
Alignment:
Q  73 aaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcg 172  Q
    ||||||||||||| |||||||||| |||| | || ||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||     
T  33103021 aaattgcagaaacttaaaggaaagataaattgcattgcattaaaaataaatgtagttcgacaaatcctttacatacattctatatgactcttttctctca 33103120  T
Q  173 ctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt--tctatggaaaactcttattaataca-aagatactaatttggaaa 269  Q
    |  |||||||| || |||||||||||| |||||||||||||||||||| |||||   ||||||||||||  |||| ||||| |  | | |||  ||||||    
T  33103121 cgtcggtacttcgagtgttttagaattatgtataggtgatttgcgacctgttttcccctatggaaaactactatttatacataccaaaataa-ctggaaa 33103219  T
Q  270 gaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
     |    ||||||||||||| |||| ||||||||||||||| | |||||||||||    
T  33103220 aagcataatcccacaatcaacacttcttccatgtagacaaccacttgtctccca 33103273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 331 - 468
Target Start/End: Original strand, 20146549 - 20146686
Alignment:
Q  331 aaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatg 430  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||  ||||||  |||||||||| ||||| |||||||||| | | ||| ||||    
T  20146549 aaggcttcgagacttttcaatgctaagtccaacatctcgtcgaaactcctacgattgagtaaaagacttcgattcctgcaagagtaatagttaactaatg 20146648  T
Q  431 ttgaccacattaaatgaggctggtgaaaataccagcta 468  Q
    ||| |||||||||||||| |||||||| ||||||||||    
T  20146649 ttggccacattaaatgagactggtgaatataccagcta 20146686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 350 - 471
Target Start/End: Complemental strand, 11013614 - 11013493
Alignment:
Q  350 atgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgagg 449  Q
    ||||||||||||||||||| | ||||||||||   |||||||||||||||| ||||| |||||||||||| | | | |||||||||||||||||||||||    
T  11013614 atgctaagtccaacatctcgtcgaaactccttaagttgaagaaaagacttcgattcctgcaagagtaaaagtaagctaatgttgaccacattaaatgagg 11013515  T
Q  450 ctggtgaaaataccagctaaca 471  Q
    ||| ||||| ||||||||||||    
T  11013514 ctgatgaaattaccagctaaca 11013493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 67 - 239
Target Start/End: Complemental strand, 36571826 - 36571655
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| ||||||||| ||||| |||| | || | || |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  36571826 aagttaaaactgcagaaacttaaag-aaagattaattgcattgcattaaaaataaaggtggttcgacaaatcctttacatacattatgtataactctttt 36571728  T
Q  167 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgttttt-ctatggaaaact 239  Q
    ||||||  |  |||||| || |||| ||||| ||| |||| |||||||||||||| ||||| ||||||||||||    
T  36571727 ctctcgtgctagtacttcgagtgttgtagaa-tttctataagtgatttgcgacccatttttcctatggaaaact 36571655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 111 - 238
Target Start/End: Complemental strand, 20150563 - 20150435
Alignment:
Q  111 attaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtg 210  Q
    ||||||||||||||||||| |||||||||||| ||| |||| | ||||||| |||||||||||  |||||||| || |||| ||||||| ||||||||||    
T  20150563 attaaaaataaaggtggtttgacaaatcctttgcatgcattttgtatgacttttttctctcgcgtcggtacttcgagtgttgtagaattatgtataggtg 20150464  T
Q  211 atttgcgacccgtttt-tctatggaaaac 238  Q
    ||||| ||||||||||  |||||||||||    
T  20150463 atttgagacccgttttccctatggaaaac 20150435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 87 - 237
Target Start/End: Complemental strand, 22607984 - 22607834
Alignment:
Q  87 taaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttga 186  Q
    |||||||||| |||| |||| |||||||||||||||||||||||  || |||||||||||||||| ||||| |||||||||||| ||  |||||||| ||    
T  22607984 taaaggaaagataaactacattgcattaaaaataaaggtggttcagcagatcctttacatacattttttataactcttttctcttgcgacggtacttcga 22607885  T
Q  187 atgttttagaattttgtataggtgatttgcgacccgttt-ttctatggaaaa 237  Q
     |||| |||||  ||  ||| ||||||||||||||||||  |||||||||||    
T  22607884 ttgttatagaa-attccataagtgatttgcgacccgtttcctctatggaaaa 22607834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 111 - 323
Target Start/End: Complemental strand, 13202192 - 13201980
Alignment:
Q  111 attaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||| |||||| || || |||| ||||| ||| |||| |||    
T  13202192 attaaaaataaaggtggttcgacaaatcctttacatacattatgtataactattttctctcgcgccggtatttcgagtgttgtagaa-tttctataagtg 13202094  T
Q  211 atttgcgacccgttttt-ctatggaaaactcttattaatacaaag-atactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagaca 308  Q
    |||||||||  |||||| ||||| ||||||  |||| ||||| || | | |||  |||||| |  | ||  |||| ||||||||| ||||||| ||||||    
T  13202093 atttgcgacatgtttttcctatgaaaaactactatttatacatagcaaaataa-ctggaaaaagcctaactccacgatcagcacttcttccatttagaca 13201995  T
Q  309 aacgcttgtctccca 323  Q
    | |||||||||||||    
T  13201994 accgcttgtctccca 13201980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 390 - 583
Target Start/End: Complemental strand, 22619770 - 22619579
Alignment:
Q  390 gaaaagacttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaat 489  Q
    ||||||||||| ||||| ||||   ||||| ||||| |||||||||||||||||||||| ||  || |||||   |||||||||||||| ||||| ||||    
T  22619770 gaaaagacttcgattcctgcaaagataaaagtcaactaatgttgaccacattaaatgagccttttggaaatataggctaacaaattgcctcccaa-aaat 22619672  T
Q  490 gccattttcgacggaatataatcaacggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgatgtcacaattatcatgactt 583  Q
    | |||||||||| ||||| | || | ||||| |||||  | |||||| |||||  |||||||||||||||||||||||| | | ||||||||||    
T  22619671 gtcattttcgactgaatacattcgaaggagataattggtaattttga-aaaactataagtatttcaaagcatgatgtcatattaatcatgactt 22619579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 17615272 - 17615430
Alignment:
Q  81 gaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggta 180  Q
    ||||| ||||| |||||| || | || |||||| ||||||||||| ||||||||||||||||||||||||| | | | |||||||| |||| | || |||    
T  17615272 gaaacttaaagaaaaggttaactgcattgcattcaaaataaaggttgttcgacaaatcctttacatacattatgtgtaactcttttttctcccgcctgta 17615371  T
Q  181 ctttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 239  Q
    ||| || |||| ||||| ||| |||| |||||| | ||||||||||  ||||||||||||    
T  17615372 cttcgagtgttgtagaa-tttctataagtgattcgtgacccgttttccctatggaaaact 17615430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 200
Target Start/End: Complemental strand, 22620153 - 22620063
Alignment:
Q  110 cattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattt 200  Q
    ||||||||||||||||||||||||||||| |||||||||  | |  || ||| ||||||||||||| ||||||| || |||| ||||||||    
T  22620153 cattaaaaataaaggtggttcgacaaatcttttacatacggtttgaataactattttctctcgctctggtacttcgagtgttgtagaattt 22620063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 20866221 - 20866293
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcc 139  Q
    ||||| ||||||||||||| ||||| |||| |||| |    ||||||||||||||||||||||||||||||||    
T  20866221 aagttaaaattgcagaaacttaaagaaaagataaattgtgttgcattaaaaataaaggtggttcgacaaatcc 20866293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 13232801 - 13232737
Alignment:
Q  188 tgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttattaataca 251  Q
    |||||||||||| || ||||||||||||||| |||||||  |||||||||||| ||||| |||||    
T  13232801 tgttttagaattatgcataggtgatttgcgatccgttttccctatggaaaactattatttataca 13232737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 20886571 - 20886610
Alignment:
Q  89 aaggaaaggtaaaatacaatgcattaaaaataaaggtggt 128  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  20886571 aaggaaaggtaaaatgcattgcattaaaaataaaggtggt 20886610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 23455191 - 23455242
Alignment:
Q  119 taaaggtggttcgacaaatcct-ttacatacattctttatgactcttttctc 169  Q
    |||||||||||||||||||| | ||||||||||| | |||||||||||||||    
T  23455191 taaaggtggttcgacaaatcatattacatacattttgtatgactcttttctc 23455242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 107; Significance: 5e-53; HSPs: 2)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 62 - 323
Target Start/End: Complemental strand, 5851 - 5582
Alignment:
Q  62 gcattaagtttaaattgcagaaacgtaaaggaaaggtaaaata------caa-tgcattaaaaataaaggtggttcgacaaatcctttacatacattctt 154  Q
    ||||||||||||||||||| |||| ||||| ||||| ||||||      ||| ||||||||||||||||||||| |||||||| |||||||||||||| |    
T  5851 gcattaagtttaaattgcaaaaacttaaagaaaaggaaaaataacaatgcaagtgcattaaaaataaaggtggtccgacaaattctttacatacattcct 5752  T
Q  155 tatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaactcttattaatacaaa 253  Q
    |||||||||||| |||||   ||||||||  |  ||||||||||| |||||||||||||| |||||||||||  |||| ||||||||||||| |||||||    
T  5751 tatgactcttttttctcgtgtcggtacttcaagcgttttagaattctgtataggtgatttacgacccgttttccctatagaaaactcttatttatacaaa 5652  T
Q  254 gatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
    |  | ||| |||||| ||||| |||||||| |||| |||| ||||||| ||||||| |||||||||||||    
T  5651 gcaaataacttggaatgaaactaatcccacgatcaacactccttccatatagacaaccgcttgtctccca 5582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 331 - 464
Target Start/End: Complemental strand, 5470 - 5337
Alignment:
Q  331 aaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaaccaatg 430  Q
    |||||||||||||||||  ||||||||||||||||||| | |||| | |||  ||||| ||||| ||||| || || |||||||||||| ||||| || |    
T  5470 aaggcttcgagactttttgatgctaagtccaacatctcgtcgaaaattcttcaattgatgaaaaaacttcgatacctgcaagagtaaaagtcaactaaag 5371  T
Q  431 ttgaccacattaaatgaggctggtgaaaatacca 464  Q
    ||||||||| ||||||||||||||||||||||||    
T  5370 ttgaccacaataaatgaggctggtgaaaatacca 5337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 104; Significance: 3e-51; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 20793 - 21097
Alignment:
Q  17 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaa 116  Q
    |||||||||||| |||||||||| ||||||||||| |   | || |||||||||||||| ||||||||| ||||||||||  ||||| ||||||||| ||    
T  20793 tgtggcgtcttttgacagaaaaa-ggttttaaaagtagtataaatgcattaagtttaaaatgcagaaacttaaaggaaagaaaaaatgcaatgcatttaa 20891  T
Q  117 aataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgc 216  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||     ||||||  | |||||||||||| | |||| |||||||||    
T  20892 aataaaggtggttccacaaattctttacatacattctttatgactcttttctctcgtgttagtacttcaagtgttttagaattat-tatacgtgatttgc 20990  T
Q  217 gacccgtt-tttctatggaaaactcttattaatacaaagatactaatttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgctt 315  Q
    ||||| || |  |||||||| |||  |||| ||||| ||  | |||  ||||||||||| |||||||| |||| |||| ||||||||| ||||| |||||    
T  20991 gacccattgtccctatggaagactactatttatacataggaaataa-gtggaaagaaactaatcccacgatcaacactccttccatgttgacaaccgctt 21089  T
Q  316 gtctccca 323  Q
    ||||||||    
T  21090 gtctccca 21097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 350 - 461
Target Start/End: Original strand, 21225 - 21337
Alignment:
Q  350 atgctaagtccaacatctctttgaaactcctttgattgaagaaaaga-cttcaattcccgcaagagtaaaaatcaaccaatgttgaccacattaaatgag 448  Q
    ||||| ||||||||||||| | ||||||| || | ||||||||||   |||| ||||  |||| | ||||| ||||| |||||||| || ||||||||||    
T  21225 atgcttagtccaacatctcgtcgaaactctttcggttgaagaaaaatgcttcgattcttgcaaaaataaaagtcaacaaatgttgatcatattaaatgag 21324  T
Q  449 gctggtgaaaata 461  Q
    | |||||||||||    
T  21325 gatggtgaaaata 21337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 72; Significance: 4e-32; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 67 - 323
Target Start/End: Complemental strand, 374294 - 374041
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| |||||||| |||| |||||||||| |||| | || |||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||    
T  374294 aagttaaaattgcaaaaac-taaaggaaagataaattgcattgcattaaaaataaaggtggttcgacaaatactttacatacattttgtat-actctttt 374197  T
Q  167 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttttctatggaaaactcttattaatacaaag-atactaatttg 265  Q
    ||||||| || ||||||||| |||| ||| | ||| |||| |||||||||||||  |||  ||||||||||||  |||| ||||| || | | ||| |      
T  374196 ctctcgcgcctgtactttgagtgttgtagca-tttctataagtgatttgcgaccgttttccctatggaaaactactatttatacatagcaaaataact-- 374100  T
Q  266 gaaagaaac-gaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
    |||| || |  |||| ||| ||||||||| ||||||||||||||| |||||||||||||    
T  374099 gaaaaaagcaaaatctcacgatcagcacttcttccatgtagacaaccgcttgtctccca 374041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 415 - 568
Target Start/End: Complemental strand, 373847 - 373696
Alignment:
Q  415 taaaaatcaaccaatgttgaccacattaaatgaggctggtgaaaataccagctaacaaattgccccccaagaaatgccattttcgacggaatataatcaa 514  Q
    ||||| ||||| ||||||||||||||||||||||| |||| |||  |||| ||||||||||||||||||| ||| ||||||||||||  ||  |  |  |    
T  373847 taaaagtcaactaatgttgaccacattaaatgaggttggtaaaataaccaactaacaaattgccccccaa-aaaagccattttcgacttaaattttttga 373749  T
Q  515 cggagagaattgacatttttgagaaaacgctaagtatttcaaagcatgatgtca 568  Q
     | ||||||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  373748 agaagagaattgtcatttttga-aaaactctaagtatttcaaagcatgatgtca 373696  T

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Target: scaffold0337 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 17221 - 17392
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| ||||||||| ||||| || | |||| | || ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  17221 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactctttt 17320  T
Q  167 ctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaact 239  Q
    ||||||| ||||||| | || |||| || || ||| |||| |||||||| ||||||||||  ||||||||||||    
T  17321 ctctcgcgccggtac-tcgagtgttgtacaa-tttctataagtgatttgtgacccgttttccctatggaaaact 17392  T

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Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 182
Target Start/End: Original strand, 4546 - 4661
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcctttacatacattctttatgactctttt 166  Q
    ||||| ||| ||||||||| ||||| ||   |||| | || ||| ||||||||||||||||||| ||||||| |||| || |||||| ||| ||||||||    
T  4546 aagttaaaagtgcagaaacttaaagaaataataaattgcattgctttaaaaataaaggtggttctacaaatcttttaaatgcattctgtataactctttt 4645  T
Q  167 ctctcgctccggtact 182  Q
    ||||||| ||||||||    
T  4646 ctctcgcgccggtact 4661  T

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Target: scaffold0016 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 12991 - 13092
Alignment:
Q  139 ctttacatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatttgcgacccgtttt-tctatggaaaa 237  Q
    ||||||||||||||||||||||||||||||||||| |  |||||| || |||||||||||| || |||||||||||||||||||||||  ||||||||||    
T  12991 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgacccgttttccctatggaaaa 13090  T
Q  238 ct 239  Q
    ||    
T  13091 ct 13092  T

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Target: scaffold0795 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 327 - 471
Target Start/End: Complemental strand, 5869 - 5725
Alignment:
Q  327 ctttaaggcttcgagacttttcaatgctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgcaagagtaaaaatcaacc 426  Q
    ||||| |||||| || |||||  |||||||||| |||||||| ||||||||||||| | ||| |||||| |||| ||||| ||||||  |||| ||| |     
T  5869 ctttagggcttcaaggctttttcatgctaagtctaacatctcgttgaaactcctttaactgaggaaaaggcttcgattcctgcaagaaaaaaagtcacct 5770  T
Q  427 aatgttgaccacattaaatgaggctggtgaaaataccagctaaca 471  Q
    |||||||||| |||||||||||| |||| ||||||||||||||||    
T  5769 aatgttgaccgcattaaatgaggttggtaaaaataccagctaaca 5725  T

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Target: scaffold0795; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 6031 - 5971
Alignment:
Q  263 ttggaaagaaacgaatcccacaatcagcactacttccatgtagacaaacgcttgtctccca 323  Q
    |||||||||||| |||||||| |||||||||  |||||||||| ||| |||||||||||||    
T  6031 ttggaaagaaactaatcccacgatcagcactcgttccatgtaggcaaccgcttgtctccca 5971  T

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Target: scaffold0161 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 352 - 464
Target Start/End: Original strand, 5276 - 5388
Alignment:
Q  352 gctaagtccaacatctctttgaaactcctttgattgaagaaaagacttcaattcccgc-aagagtaaaaatcaaccaatgttgaccacattaaatgaggc 450  Q
    ||||||||||||||||| ||||| ||||||   |||||||||||||||  ||||| || |||| ||||| ||||| ||||||||||||||||||||| ||    
T  5276 gctaagtccaacatctcgttgaagctccttaagttgaagaaaagactttgattcctgcgaaga-taaaagtcaactaatgttgaccacattaaatgatgc 5374  T
Q  451 tggtgaaaatacca 464  Q
    |||||||| |||||    
T  5375 tggtgaaattacca 5388  T

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Target: scaffold0142 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 20572 - 20725
Alignment:
Q  98 taaaatacaatgcattaaaaataaaggtggttcgacaaatccttt-acatacattctttatgactcttttctctcgctccggtactttgaatgttttaga 196  Q
    |||| |||| |||||||||| ||||||||||| |||||||  ||| ||||||||| | ||| ||||||||||||||| ||||||||| || |||||||||    
T  20572 taaattacattgcattaaaa-taaaggtggtttgacaaattatttcacatacattatgtataactcttttctctcgcgccggtacttcgagtgttttaga 20670  T
Q  197 attttgtataggtgatttgcgacccgt-ttttctatggaaaactcttattaataca 251  Q
    |  || | || |||||||||||||||| ||  |||||||||||| ||||| |||||    
T  20671 a-gttctgtaagtgatttgcgacccgtcttgcctatggaaaactattatttataca 20725  T

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Target: scaffold1102 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 996 - 871
Alignment:
Q  115 aaaataaaggtggttcgacaaatccttt-acatacattctttatgactcttttctctcgctccggtactttgaatgttttagaattttgtataggtgatt 213  Q
    ||||||||||| |||| ||||||| ||| ||||||||| | ||| |||||| | |||||| ||||||||| || |||||| ||| ||| |||| ||||||    
T  996 aaaataaaggttgttcaacaaatcattttacatacattatgtataactcttctttctcgcgccggtacttcgagtgttttggaa-tttctataagtgatt 898  T
Q  214 tgcgacccgtttttc-tatggaaaact 239  Q
    ||| ||||||||| | |||||||||||    
T  897 tgcaacccgttttccgtatggaaaact 871  T

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Target: scaffold0040 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 27031 - 26930
Alignment:
Q  67 aagtttaaattgcagaaacgtaaaggaaaggtaaaatacaatgcattaaaaataaaggtggttcgacaaatcct-ttacatacattctttatgactcttt 165  Q
    |||||||||  |||||||| ||||| |||| |||| | || |||||||||  |||||||||||||||||||    ||||||||||| | |||||||||||    
T  27031 aagtttaaaacgcagaaac-taaagaaaagataaattgcattgcattaaa--taaaggtggttcgacaaattagattacatacattatgtatgactcttt 26935  T
Q  166 tctct 170  Q
    |||||    
T  26934 tctct 26930  T

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