View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9241_high_4 (Length: 548)
Name: NF9241_high_4
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9241_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 15 - 548
Target Start/End: Complemental strand, 11974995 - 11974462
Alignment:
| Q |
15 |
ctcttgacagcagaaggatttcaatcggatttagaaaactctacagaagacaaattccgccagtatttcaacgactttgttgggatgcctattttcaaag |
114 |
Q |
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| T |
11974995 |
ctcttgacagcagaaggatttcaatcggatttagaaaactctacagaagacaaattccgccagtatttcaacgactttgttgggatgcctattttcaaag |
11974896 |
T |
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| Q |
115 |
atatggaagaagacgagtgtggtgctgttagaagatgtagaatgcaacccttaatgcacgacctagcacgattcgtatcagatcaaatagagaatgtcac |
214 |
Q |
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| T |
11974895 |
atatggaagaagacgagtgtggcgctgttagaagatgtagaatgcaacccttaatgcacgacctagcacgattcgtatcagatcaaatagagaatgtcac |
11974796 |
T |
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| Q |
215 |
ggtggatccagaaggtgaaaaagttactgaaggagtcttacgagcctcttttgattttagcttggacgtttcgcgtggaattccaccttctttgtttaaa |
314 |
Q |
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| T |
11974795 |
ggtggatccagaaggtgaaaaagttactgaaggagtcttacgagcctcttttgattttagcttggacgtttcacgtggaattccaccttctttgtttaaa |
11974696 |
T |
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| Q |
315 |
aaggcaaagaaactaagggccattctcttttggaagacacaatcgttgcttccgaaggacatgaagacaggctattccacttgtggtcaaatattcaaat |
414 |
Q |
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| T |
11974695 |
aaggcaaagaaactaaaggccattctcttttggaagacacaatcgttgcttccgaaggacatgaagacaggctattccacttgtggtcaaatattcaaat |
11974596 |
T |
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| Q |
415 |
ccttcaaggccactctccgaatgttggatctccacgacatgggaatcaagacattgcccaactcaattggggatatgaataatttgaggtatctcgacct |
514 |
Q |
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| T |
11974595 |
ccttcaaggccactctccgaatgttggatctccacgacatgggaatcaagacattgcccaactcaattggggatatgaataatttgaggtatctcgacct |
11974496 |
T |
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| Q |
515 |
gtcccttaattctatagaaaagttacccaattcc |
548 |
Q |
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| T |
11974495 |
gtcccttaattctatagaaaagttacccaattcc |
11974462 |
T |
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