View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9241_high_9 (Length: 397)
Name: NF9241_high_9
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9241_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 14924359 - 14923973
Alignment:
| Q |
1 |
atatcacattatattacaaaagaatcatataattgtgttttatactaaaatgcatccctaactgattcaaagagtatatatcagaatcaatatttcaaat |
100 |
Q |
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| T |
14924359 |
atatcacattatattacaaaagaatcatataattatgttttatactaaaatgcatccctaactgactcaaagagtatatatcagaatcaatatttcaaat |
14924260 |
T |
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| Q |
101 |
cctgaacagaattggacaattcaacttttgaac-------cggcacaatcgatgtttcagttatttgagcgattctatagcaatttcgttttggttcggt |
193 |
Q |
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| T |
14924259 |
ccagaacagaatcggacaattcaacttttgaactgtgaaccggcacgatcgatgtttcagttatttgagcgattctatagcaatttcgttttggttcggt |
14924160 |
T |
|
| Q |
194 |
tcgagcaaattaaaacagtttttacatcactcggagatctcatactaccttttcttctaatctctctcgttaatgctagtacaagatttgaaccgtttaa |
293 |
Q |
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| T |
14924159 |
tcgagcaaattaaaacagtttttacatcactcggagatctcatactaccttttcttccaatctctctcgttaatgctagtacaagatttgaaccgtttaa |
14924060 |
T |
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| Q |
294 |
taacattaatcagaaatagaatgtttatctacactaattttccttctaacctctctcgctaacgctagttcaaaatttgaatgaatt |
380 |
Q |
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| T |
14924059 |
taacattaatcagaaatagaatgtttatctacactaattttccttctaacctctctcgctaacgctagttcaaaatttgaatgaatt |
14923973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 14924433 - 14924358
Alignment:
| Q |
6 |
acattatattacaaaagaatcatataattgtgttttatactaaaatgcatccctaactgattcaaagagtatatat |
81 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14924433 |
acattatattacaaaagaatcatataattgtgttttatactaaaatgcatccctaactgattcaaagagtatatat |
14924358 |
T |
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