View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9241_low_12 (Length: 473)

Name: NF9241_low_12
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9241_low_12
NF9241_low_12
[»] chr5 (1 HSPs)
chr5 (10-473)||(11634932-11635395)
[»] chr3 (13 HSPs)
chr3 (21-136)||(30201152-30201267)
chr3 (71-119)||(30239063-30239111)
chr3 (71-134)||(29649063-29649126)
chr3 (21-127)||(29856825-29856931)
chr3 (10-126)||(30227316-30227432)
chr3 (180-274)||(29856996-29857090)
chr3 (73-126)||(29751882-29751935)
chr3 (85-133)||(30223140-30223188)
chr3 (84-132)||(36333932-36333980)
chr3 (76-110)||(30214753-30214787)
chr3 (97-134)||(29713035-29713072)
chr3 (85-134)||(30230381-30230430)
chr3 (84-132)||(36313855-36313903)
[»] chr6 (2 HSPs)
chr6 (22-125)||(5569421-5569524)
chr6 (22-109)||(5574415-5574502)
[»] chr8 (1 HSPs)
chr8 (73-127)||(1152919-1152973)
[»] chr7 (2 HSPs)
chr7 (71-132)||(16644731-16644792)
chr7 (71-132)||(17619092-17619153)
[»] chr1 (1 HSPs)
chr1 (83-119)||(16955668-16955704)


Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 473
Target Start/End: Original strand, 11634932 - 11635395
Alignment:
Q  10 gacatcataagaaacattcttcagaggctttataccattgatatagtagaaaaggcatgtatagtttgtcctctatggtggaacatatgcaaggatcctc 109  Q
    |||||||||| ||||||||||| ||||||| |||||||||| |||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||    
T  11634932 gacatcataacaaacattcttcggaggcttgataccattgacatagtaaaaaatgcatgtatagtatgtcctctatggtggagcatatgcaaggatcctc 11635031  T
Q  110 tcatgtggcgtaccattcgcatgataggtgattgcagttactttaatgcaaatttgccagagatctgtcattatgctgttgaacgaagctgcggtcattt 209  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11635032 tcatgtggcgtaccattcgcatgataggtgaacgcagttactttaatgcaaatttcccagagatctgtcattatgctgttgaacgaagctgcggtcattt 11635131  T
Q  210 agaagagatttctgttgagtattttgccacagatgagctccttgaattcatagttgagaagtaataataattgataaaagactcttttttcttgtatata 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11635132 agaagagatttctgttgagtattttgccacagatgagctccttgaattcatagttgagaagtaataataattgataaaagaatcttttttcttgtatata 11635231  T
Q  310 tttcaattgcttatattgttttatcatccatgatttattttctaaatttttatgctgcttaatgatggctttatgcatttgcagtggcactaatctgaga 409  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11635232 tttcaattgcgtatattgttttatcatccatgatttattttctaaatttttatgctgcttaatgatggctttatgcatttgcagtggcactaatctgaga 11635331  T
Q  410 tgcatgcggcttgtagaatgccaatacatttcagatgaaggatcttgcaaagctgtgagaaaac 473  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11635332 tgcatgcggcttgtagaatgccaatacatttcagatgaaggattttgcaaagctgtgagaaaac 11635395  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 30201152 - 30201267
Alignment:
Q  21 aaacattcttcagaggctttataccattgatatagtagaaaag-gcatgtatagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 119  Q
    |||||||||||| ||||||  ||||||||| || || || ||| ||||||  ||| |||||||||||||||||||| ||||||||||||||||||||||     
T  30201152 aaacattcttcaaaggcttagtaccattgaaattgt-gacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctctcatgtggca 30201250  T
Q  120 taccattcgcatgatag 136  Q
     |||||||  |||||||    
T  30201251 caccattcatatgatag 30201267  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 30239063 - 30239111
Alignment:
Q  71 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 119  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30239063 tagtatgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 30239111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 29649063 - 29649126
Alignment:
Q  71 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgat 134  Q
    |||| |||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||    
T  29649063 tagtatgtcctctatcgtggaacatttgtaaggatcctctcatgtggcgtaccattcacatgat 29649126  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 29856825 - 29856931
Alignment:
Q  21 aaacattcttcagaggctttataccattgatatagtagaaaag-gcatgtatagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcg 119  Q
    |||||| ||||| |||||| |||| ||||| || || |||||| ||||||  ||||||||||||||||||| ||||||| || ||||||||| |||||||    
T  29856825 aaacatccttcaaaggcttgatacaattgaaatcgt-gaaaagtgcatgtcaagtttgtcctctatggtgggacatatgtaaagatcctctcctgtggcg 29856923  T
Q  120 taccattc 127  Q
    ||||||||    
T  29856924 taccattc 29856931  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 30227316 - 30227432
Alignment:
Q  10 gacatcataagaaacattcttcagaggctttataccattgatatagtagaaaag-gcatgtatagtttgtcctctatggtggaacatatgcaaggatcct 108  Q
    ||||||| || |||||||||||| ||||||  |||||| || || || || ||| ||||||  ||| |||||||||| ||||||||| ||||||||||||    
T  30227316 gacatcacaacaaacattcttcaaaggcttggtaccatcgagattgt-gacaagtgcatgtcaagtgtgtcctctatagtggaacatttgcaaggatcct 30227414  T
Q  109 ctcatgtggcgtaccatt 126  Q
    ||||||||||| ||||||    
T  30227415 ctcatgtggcgcaccatt 30227432  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 29856996 - 29857090
Alignment:
Q  180 ttatgctgttgaacgaagctgcggtcatttagaagagatttctgttgagtattttgccacagatgagctccttgaattcatagttgagaagtaat 274  Q
    |||||||||||||||||| ||||||||| | ||||| ||   | ||||||||| ||  || ||||| |||||||||||||||| |||||||||||    
T  29856996 ttatgctgttgaacgaagttgcggtcatcttgaagacatcaatattgagtattctgtaactgatgaactccttgaattcatagctgagaagtaat 29857090  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 29751882 - 29751935
Alignment:
Q  73 gtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccatt 126  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||    
T  29751882 gtttgtcctctttggtggaacgtttgcaaggatcctctcatgtggagtaccatt 29751935  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 30223140 - 30223188
Alignment:
Q  85 tggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatga 133  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  30223140 tggtggaacatttgcaaggatcctctcatgtggcgcaccattcacatga 30223188  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 36333980 - 36333932
Alignment:
Q  84 atggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 132  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||    
T  36333980 atggtggaacatttgcaaggatcctctcatgtggcgcactattcgcatg 36333932  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 30214753 - 30214787
Alignment:
Q  76 tgtcctctatggtggaacatatgcaaggatcctct 110  Q
    |||||||||||||||||||| ||||||||||||||    
T  30214753 tgtcctctatggtggaacatttgcaaggatcctct 30214787  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 29713035 - 29713072
Alignment:
Q  97 tgcaaggatcctctcatgtggcgtaccattcgcatgat 134  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  29713035 tgcaaggatcctctaatgtggcgtaccattcacatgat 29713072  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 30230381 - 30230430
Alignment:
Q  85 tggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatgat 134  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||||| ||||||    
T  30230381 tggtggagcatttgcaaggatcctcgcatgtggcgcaccattcacatgat 30230430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 36313903 - 36313855
Alignment:
Q  84 atggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 132  Q
    ||||| ||| || ||||||||||||||||||||||| || |||||||||    
T  36313903 atggttgaagatttgcaaggatcctctcatgtggcgcactattcgcatg 36313855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 5569524 - 5569421
Alignment:
Q  22 aacattcttcagaggctttataccattgatatagtagaaaaggcatgtatagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgta 121  Q
    ||||| ||||| |||||| |||| |||||| |||||  ||  ||||||  ||| |||||||||||||||||||| ||||||||||||||  |||||||||    
T  5569524 aacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctcttgtgtggcgta 5569425  T
Q  122 ccat 125  Q
    ||||    
T  5569424 ccat 5569421  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 5574502 - 5574415
Alignment:
Q  22 aacattcttcagaggctttataccattgatatagtagaaaaggcatgtatagtttgtcctctatggtggaacatatgcaaggatcctc 109  Q
    ||||| ||||| |||||| |||| |||||| |||||  ||  ||||||  ||| |||||||||||||||||||| |||||||||||||    
T  5574502 aacatccttcaaaggcttgatactattgatgtagtaacaagtgcatgtcaagtgtgtcctctatggtggaacatttgcaaggatcctc 5574415  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 1152973 - 1152919
Alignment:
Q  73 gtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattc 127  Q
    ||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||    
T  1152973 gtttgtcctctgtggtggcacatttgcaaggatcctctaatgtggcgtaccattc 1152919  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 16644792 - 16644731
Alignment:
Q  71 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 132  Q
    |||| ||| |||||||||||||||| |||||||| |||||||||||||| ||||||| ||||    
T  16644792 tagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg 16644731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 17619153 - 17619092
Alignment:
Q  71 tagtttgtcctctatggtggaacatatgcaaggatcctctcatgtggcgtaccattcgcatg 132  Q
    |||| ||| |||||||||||||||| |||||||| |||||||||||||| ||||||| ||||    
T  17619153 tagtgtgtgctctatggtggaacatttgcaaggaacctctcatgtggcgcaccattcacatg 17619092  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 16955704 - 16955668
Alignment:
Q  83 tatggtggaacatatgcaaggatcctctcatgtggcg 119  Q
    |||||||||| || |||||||||||||||||||||||    
T  16955704 tatggtggaatatttgcaaggatcctctcatgtggcg 16955668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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