View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9241_low_14 (Length: 451)
Name: NF9241_low_14
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9241_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 425302 - 425735
Alignment:
| Q |
8 |
caatgacaacatatatcatgtatgatattaacaacataactctttctgatatcaatatgtggatggcttgaccaccaaacttaaaattacggttcttcca |
107 |
Q |
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| T |
425302 |
caatgacaacatatatcatgtatgatattaacaatatacctctttctgatatcaatatgtggatggcttgaccaccaaacttaaaattatggttcttcca |
425401 |
T |
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| Q |
108 |
tcttccttcaattcaagtccttaaataactcagctaagctgtttcacatacaacaaaaataaataaattttctgtatacacaaaatttcattaaactgtt |
207 |
Q |
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| T |
425402 |
tcttccttcaattcaagtccttaaataactcagctaagctgtttcgcatacaacaaaaataaataaattttctctatacacaaaatttcattaaactgtt |
425501 |
T |
|
| Q |
208 |
caaaataaacgatataaagttatctattcacaactccaaaacattacattctttaatttcaaagcctaactattcannnnnnnnnnnnnnnnnnngattc |
307 |
Q |
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| T |
425502 |
ccaaataaacgatataaagttatctattcacaactccaaaacattacattctttaatttcaaagcctaactaatcaattttatttatttatttttgattc |
425601 |
T |
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| Q |
308 |
agcaaatattattaactactagcaatcatgaaagattctaataggacaaagaaatactnnnnnnnnttcaagaactcgacctggaaaaatttaatcatgc |
407 |
Q |
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| T |
425602 |
agcaaatattattaactactagcaatcatgagagattctaataggacaaagaaatactaaaaaaaattcaagaacgcgacctggaaaaatttaatcatgc |
425701 |
T |
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| Q |
408 |
atacgatcatgttggatttgaacatgtgctgatg |
441 |
Q |
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| T |
425702 |
atacgatcatgttggatttgaacatgtgctgatg |
425735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 65 - 279
Target Start/End: Original strand, 17217712 - 17217920
Alignment:
| Q |
65 |
tgtggatggcttgaccaccaaacttaaaattacggttcttccatcttccttcaattcaagtccttaaataactcagctaagctgtttcacatacaacaaa |
164 |
Q |
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| T |
17217712 |
tgtggatggcttgaccaccaaacttcaaattatggctctt-------ccttcaattcaagtccttaaataactcagctaagctgttttacaaacaacaaa |
17217804 |
T |
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| Q |
165 |
aataaataaattt--tctgtatacacaaaatttcattaaactgttcaaaataaacgatataaagttatctattcacaactccaaaacattacattcttta |
262 |
Q |
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| T |
17217805 |
aactaataaattttgtctctatacacaaaattccattaaac-attccaaataaatgatatgaagttatctattcacaactccaaaacatcacattcttca |
17217903 |
T |
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| Q |
263 |
atttcaaagcctaacta |
279 |
Q |
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| T |
17217904 |
aattcaaagcctaacta |
17217920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 17215493 - 17215344
Alignment:
| Q |
8 |
caatgacaacatatatcatgtatgatattaacaacataactctttctgatatcaatatgtggatggcttgaccaccaaacttaaaattacggttcttcca |
107 |
Q |
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|||||||||||||||||||||||| | ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| |||||| || || |
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| T |
17215493 |
caatgacaacatatatcatgtatggttttaacaacatacctctatctgatatcaatgtgtggatggcttgaccaccaaacttcaaattatggctc----- |
17215399 |
T |
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| Q |
108 |
tcttccttcaattcaagtccttaaataactcagctaagctgtttcacatacaaca |
162 |
Q |
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| T |
17215398 |
tcttccttcaattcaagtccttaaataactcagctaagctgtttcacatacaaca |
17215344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 17215346 - 17215253
Alignment:
| Q |
185 |
acacaaaatttcattaaactgttcaaaataaacgatataaagttatctattcacaactccaaaacattacattctttaatttcaaagcctaacta |
279 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||| |
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| T |
17215346 |
acacaaaatttcattaaacttttccaaataaacgatataaagtta-ctattcacaactccaaaacattacatttttcaaattcaaagcctaacta |
17215253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 17215225 - 17215183
Alignment:
| Q |
306 |
tcagcaaatattattaactactagcaatcatgaaagattctaa |
348 |
Q |
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||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
17215225 |
tcagcaaatattattaactactaacaaacatgaaagatgctaa |
17215183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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