View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9241_low_16 (Length: 446)

Name: NF9241_low_16
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9241_low_16
NF9241_low_16
[»] chr1 (1 HSPs)
chr1 (135-438)||(13153609-13153917)
[»] scaffold0999 (1 HSPs)
scaffold0999 (135-437)||(2875-3180)
[»] chr5 (1 HSPs)
chr5 (20-83)||(3762163-3762228)
[»] chr8 (2 HSPs)
chr8 (370-434)||(13528944-13529008)
chr8 (370-434)||(13618483-13618547)
[»] chr4 (1 HSPs)
chr4 (370-414)||(25367745-25367789)
[»] chr3 (2 HSPs)
chr3 (121-208)||(11474405-11474492)
chr3 (206-281)||(11474531-11474606)
[»] chr2 (1 HSPs)
chr2 (388-438)||(23854063-23854113)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 135 - 438
Target Start/End: Complemental strand, 13153917 - 13153609
Alignment:
Q  135 aagaatcaaaataacatttatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatgtagtttgatcttactgcatgaagaga 234  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13153917 aagaatcaaaattacatctatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatgtagtttgatcttactgcatgaagaga 13153818  T
Q  235 ggacatgacaagaaa--gtttgttcaatgttaaaagctttcaagcttaacacactggnnnnnnnnnn---ggataagtcttggtaaactgacctatgagg 329  Q
    ||||||| |||||||  ||||||||||||||||||||| |||||||||| |||||||             ||||||||||||| ||||||||||||||||    
T  13153817 ggacatgtcaagaaattgtttgttcaatgttaaaagctatcaagcttaaaacactggaaaaaaaaaaaaaggataagtcttggaaaactgacctatgagg 13153718  T
Q  330 acccatgaaaacatcggtatccaagaactaaattgtctattgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgt 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13153717 acccatgaaaacatcggtatccaagaactaaattgtctattgatggacgaattgacaggtgcaccaaatcaaaacaagtaataaaacagtagattatcgt 13153618  T
Q  430 ctccacagg 438  Q
    |||||||||    
T  13153617 ctccacagg 13153609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0999 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold0999
Description:

Target: scaffold0999; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 135 - 437
Target Start/End: Complemental strand, 3180 - 2875
Alignment:
Q  135 aagaatcaaaataacatttatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatgtagtttgatcttactgcatgaagaga 234  Q
    |||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3180 aagaatcaaaattacatctatgatttatggtgtaagaaagaagatactaaaagttattgaatatatagaagatgtagtttgatcttactgcatgaagaga 3081  T
Q  235 ggacatgacaagaaagtttgttcaatgttaaaagctttcaagcttaacacactgg---nnnnnnnnnnggataagtcttggtaaactgacctatgaggac 331  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||             ||||||||||||| ||||||||||||||||||    
T  3080 ggacatgacaagaaagtttgttcaatgttaaaagctatcaagcttaaaacactggaaaaaaaaaaaaaggataagtcttggaaaactgacctatgaggac 2981  T
Q  332 ccatgaaaacatcggtatccaagaactaaattgtctattgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtct 431  Q
    |||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2980 ccatgaaaacatggttatccaagaactaaattgtctattgatggatgaattgacaggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtct 2881  T
Q  432 ccacag 437  Q
    ||||||    
T  2880 ccacag 2875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 3762163 - 3762228
Alignment:
Q  20 gatcgaagtaggcataccgtcaaccactttacccaacaaaccttctta--ccccatcacacctccc 83  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  3762163 gatcgaggtaggcataccgtcgaccactttacccaacaaaccttcttaccccccatcacacctccc 3762228  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 434
Target Start/End: Original strand, 13528944 - 13529008
Alignment:
Q  370 tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctcca 434  Q
    |||||| |||||||||| ||||||||||||| || ||||||||||  ||||  ||||||||||||    
T  13528944 tgatgggcgaattgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctcca 13529008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 434
Target Start/End: Original strand, 13618483 - 13618547
Alignment:
Q  370 tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctcca 434  Q
    |||||| |||||||||| ||||||||||||| || ||||||||||  ||||  ||||||||||||    
T  13618483 tgatgggcgaattgataagtgcaccaaatcataataagtaataaagtagtaagttatcgtctcca 13618547  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 25367789 - 25367745
Alignment:
Q  370 tgatggacgaattgataggtgcaccaaatcaaaacaagtaataaa 414  Q
    ||||||||||||||| | |||||||||||| ||||||||||||||    
T  25367789 tgatggacgaattgacaagtgcaccaaatcgaaacaagtaataaa 25367745  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 11474405 - 11474492
Alignment:
Q  121 tctaatggtatagaaagaatcaaaataacatttatgatttatggtgtaagaaagaagaaactaaaaggtattgaatatatagaagatg 208  Q
    ||||||| |||||||| |   ||||| |||| |||||||||||||||||| | ||  ||||||||||||||||  |||| ||||||||    
T  11474405 tctaatgatatagaaaaatgaaaaatgacatctatgatttatggtgtaagtatgagcaaactaaaaggtattgggtatacagaagatg 11474492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 11474531 - 11474606
Alignment:
Q  206 atgtagtttgatcttactgcatgaagagaggacatgacaagaaagtttgttcaatgttaaaagctttcaagcttaa 281  Q
    |||||||||  ||||| |||||||| | |||||| || |||||||  |||||||||||||||| ||||| ||||||    
T  11474531 atgtagtttactcttattgcatgaaaataggacaagaaaagaaagcatgttcaatgttaaaagatttcatgcttaa 11474606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 23854063 - 23854113
Alignment:
Q  388 gtgcaccaaatcaaaacaagtaataaaacagtagattatcgtctccacagg 438  Q
    ||||||||||||| |||||||||||||  |||| ||||| |||||||||||    
T  23854063 gtgcaccaaatcataacaagtaataaagtagtaaattattgtctccacagg 23854113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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