View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9241_low_17 (Length: 436)
Name: NF9241_low_17
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9241_low_17 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Original strand, 31101357 - 31101776
Alignment:
| Q |
17 |
gaagaaattaaggtatctagcaattacacaaggtagcctagttggttccattccacaagaaattggtttgttgacaaaccttacttatattgatttgtca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101357 |
gaagaaattaaggtatctagcaattacacaaggtagcctagttggttccattccacaagaaattggtttgttgacaaaccttacttatattgatttgtca |
31101456 |
T |
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| Q |
117 |
aacaactttctatctggtgttatccctgaaaccatagggaacatgagcaaattaaatcaactcatccttgctaataacaccaagttgtatggaccaattc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31101457 |
aacaactttctatctggtgttatccctgaaaccatagggaacatgagcaaattaaatcaactcatgtttgctaataacaccaagttgtatggaccaattc |
31101556 |
T |
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| Q |
217 |
ctcactccttgtggaacatgtctagcttgaccttgatctacctttttaacatgagtctttctggttcaatccctgattcagtacaaaacttgattaattt |
316 |
Q |
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| T |
31101557 |
ctcactccttgtggaacatgtctagcttgaccttgatctacctttataacatgagtctttctggttcaatccctgattcagtacaaaacttgattaattt |
31101656 |
T |
|
| Q |
317 |
ggatgtacttgcactttatatgaataacctttctggattcattccttccacaattggaaacttgaaaaacctcactttattgcttttgcgaaatagtcga |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31101657 |
ggatgtacttgcactttatatgaataacctttctggattcattccttccacaattggaaacttgaaaaacctcactttattgcttttgcgaaataatcga |
31101756 |
T |
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| Q |
417 |
ctttctggatcaattcctgc |
436 |
Q |
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| T |
31101757 |
ctttctggatcaattcctgc |
31101776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 58 - 389
Target Start/End: Original strand, 31138775 - 31139106
Alignment:
| Q |
58 |
ttggttccattccacaagaaattggtttgttgacaaaccttacttatattgatttgtcaaacaactttctatctggtgttatccctgaaaccatagggaa |
157 |
Q |
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||||||| |||||| |||||||||| || ||||||||||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |
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| T |
31138775 |
ttggttctattccaaaagaaattgggtttttgacaaaccttactcttattgatttgtcaaacaacattctttctggtgttattcctgaaaccatagggaa |
31138874 |
T |
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| Q |
158 |
catgagcaaattaaatcaactcatccttgctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctac |
257 |
Q |
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|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31138875 |
catgagcaaattaaataaactctaccttgctaaaaacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctac |
31138974 |
T |
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| Q |
258 |
ctttttaacatgagtctttctggttcaatccctgattcagtacaaaacttgattaatttggatgtacttgcactttatatgaataacctttctggattca |
357 |
Q |
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| T |
31138975 |
ctttttaacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaacca |
31139074 |
T |
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| Q |
358 |
ttccttccacaattggaaacttgaaaaacctc |
389 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31139075 |
ttccttccacaattggaaacttgaaaaacctc |
31139106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 53 - 390
Target Start/End: Original strand, 31056958 - 31057295
Alignment:
| Q |
53 |
cctagttggttccattccacaagaaattggtttgttgacaaaccttacttatattgatttgtcaaacaactttctatctggtgttatccctgaaaccata |
152 |
Q |
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|||||| ||||||||||||||||||||||| || |||||||| ||| | ||||||||||||||||| |||| ||||||||||| ||| |||||||||||| |
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| T |
31056958 |
cctagtcggttccattccacaagaaattgggtttttgacaaatcttgcatatattgatttgtcaaaaaactctctatctggtggtattcctgaaaccata |
31057057 |
T |
|
| Q |
153 |
gggaacatgagcaaattaaatcaactcatccttgctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttga |
252 |
Q |
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|||||| ||||||||||| || ||| | ||| |||||||||||||| ||| ||| |||||||| || ||||||||||||||||||||||||||| | |
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| T |
31057058 |
gggaacttgagcaaattagatacacttgttctttctaataacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttgaccgtac |
31057157 |
T |
|
| Q |
253 |
tctacctttttaacatgagtctttctggttcaatccctgattcagtacaaaacttgattaatttggatgtacttgcactttatatgaataacctttctgg |
352 |
Q |
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||||| || |||||| ||||||||||||||||||||||||| ||||||||||| |||||||| | | |||||||||| |||| ||| |||||||||| |
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| T |
31057158 |
tctactttgataacataggtctttctggttcaatccctgattccatacaaaacttggttaatttgaaggaacttgcacttgatatcaatcacctttctgg |
31057257 |
T |
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| Q |
353 |
attcattccttccacaattggaaacttgaaaaacctca |
390 |
Q |
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|| |||||||||||| |||||| |||||||||| |||| |
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| T |
31057258 |
atccattccttccactattggagacttgaaaaatctca |
31057295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 385
Target Start/End: Original strand, 31182490 - 31182817
Alignment:
| Q |
58 |
ttggttccattccacaagaaattggtttgttgacaaaccttacttatattgatttgtcaaacaactttctatctggtgttatccctgaaaccatagggaa |
157 |
Q |
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||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| || |
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| T |
31182490 |
ttggttctattccaaaagaaattgggtttttgacaaaccttacttatattgatttgtcaaacaaccttctttctggtgttatttctgaaaccataggcaa |
31182589 |
T |
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| Q |
158 |
catgagcaaattaaatcaactcatccttgctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctac |
257 |
Q |
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|||||| ||||||||| ||| |||||| ||||||||| ||| | | ||| |||||||| |||||||||||||||||||||||||||| | |||| |
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| T |
31182590 |
catgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacactatctta |
31182689 |
T |
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| Q |
258 |
ctttttaacatgagtctttctggttcaatccctgattcagtacaaaacttgattaatttggatgtacttgcactttatatgaataacctttctggattca |
357 |
Q |
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|||| |||||||||||||||||||||||||||||| || || |||||||||||||| || ||| ||||||||| || ||| |||||||||| || |
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| T |
31182690 |
ctttataacatgagtctttctggttcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaacca |
31182789 |
T |
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| Q |
358 |
ttccttccacaattggaaacttgaaaaa |
385 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
31182790 |
ttccttccacaattggaaacttgaaaaa |
31182817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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