View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9241_low_23 (Length: 378)
Name: NF9241_low_23
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9241_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 53675684 - 53675331
Alignment:
| Q |
19 |
ttctctgcacttttgcatttgaaaatggaacttccttcctcttctacaatacaaattggactctctttggatccaaatgatagcaaggaacttctatcat |
118 |
Q |
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| T |
53675684 |
ttctctgcacttttgcatttgaaaatggaacttccttcctcttctacaatactaattggactctctttggacccaaatgatagcaaggaacttctatcat |
53675585 |
T |
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| Q |
119 |
gggcaataagagttttagctaatccaaatgataccattgttgctgtgcatgttcttggttagtcactannnnnnnnn--attttaacatgtacaatttat |
216 |
Q |
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| T |
53675584 |
gggcaataagagttttagctaatccaaatgataccattgttgctgtgcatgttcttggttagtcactgtttttttttttattttaacatgtacaatttat |
53675485 |
T |
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| Q |
217 |
tcaaccgttttttcatactgtgaattattagtgttcttttaatagcctgaaaatttgttcaattttcagtagcagagaatatgaagaaacgtgtatcagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53675484 |
tcaaccgttttttcatactgtgaattattagtgttcttttaatagcctgaaaatttgttcaattttcagtagcagagaatatgaagaaacgtgtatcagt |
53675385 |
T |
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| Q |
317 |
gagaagaagacaatcacaacttaggcaagcaaaagcatatgttatatctctgct |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53675384 |
gagaagaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtgct |
53675331 |
T |
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