View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9241_low_26 (Length: 356)
Name: NF9241_low_26
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9241_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 2484438 - 2484135
Alignment:
| Q |
17 |
cagagagggacaatcaatcagaaaaactaatgaaggagaaactagttaaacaaagaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagt |
116 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484438 |
cagagagggacaatcaatgagaaaaactaatgagggagaaaccaattaaacaaacaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagt |
2484339 |
T |
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| Q |
117 |
gcaatcataaaggggagatatgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaaccaaatgaacca |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484338 |
gcaatcataaaggggagatgtgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacatacca-------------- |
2484253 |
T |
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| Q |
217 |
aaccgaattcaaagtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484252 |
aaccgaattcaaagtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcat |
2484153 |
T |
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| Q |
317 |
tttgcattcgaactaaat |
334 |
Q |
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|||||||||||||||||| |
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| T |
2484152 |
tttgcattcgaactaaat |
2484135 |
T |
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