View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9241_low_30 (Length: 319)
Name: NF9241_low_30
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9241_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 48038875 - 48038707
Alignment:
| Q |
10 |
tggacatcaaaaaagtgcactaatgcattttgtgaatattgatatgtggcatgctccatatccatgctttaattttatttggtgtatcaagcatatttgc |
109 |
Q |
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| T |
48038875 |
tggacatcaaaaaggcgcactaatgcatttcgtgaatattgatatgtggcatgctccatatccatgctataattttatttggtgtataaagcatatttgc |
48038776 |
T |
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| Q |
110 |
aaaggaaaacacctagaggaaaaatcaaaatctgagactaatttcccttgcccaccaacctcttcgttg |
178 |
Q |
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| T |
48038775 |
aaaggaaaacacctagaggaaaaatcaaaatctgagactaatttcccttgcccaccaacctcttcgttg |
48038707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 48038631 - 48038582
Alignment:
| Q |
254 |
tcatcacgaagtaccttgccaatgcaattggatacccaaggacaatgatg |
303 |
Q |
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| T |
48038631 |
tcatcacgaagtaccttgccaatgcaattggatacccaaggacaatgatg |
48038582 |
T |
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