View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9241_low_31 (Length: 312)
Name: NF9241_low_31
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9241_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 68 - 295
Target Start/End: Original strand, 20271178 - 20271405
Alignment:
| Q |
68 |
tttcattaattccaattataagccatgcttgcttatagaatcagccaagtcataatcacatgagttcgacttttggtttagcgatttttggcctattgtt |
167 |
Q |
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| T |
20271178 |
tttcattaattccaattataagccatgcttgcttctagaatcagccaagtcataatcacatgagttccacttttggtttagcgatttttggcctattgtt |
20271277 |
T |
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| Q |
168 |
ttccatttgatagattaaaattgtattgtgttgtttggtgccttatctgttaggtgataggaatgcattttatgaatcctcccccagtgatgaaattgat |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20271278 |
ttccatttgatagattaaaattgtattgtgttgtttggtgccttatctgttaggtgataggaatgcattttatgaatcctcctccagtgatgaaattgat |
20271377 |
T |
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| Q |
268 |
tgagattgtgcgaggtgccgacacttct |
295 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
20271378 |
tgagattgtgcgaggtgccgacacttct |
20271405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 68 - 295
Target Start/End: Original strand, 21057806 - 21058033
Alignment:
| Q |
68 |
tttcattaattccaattataagccatgcttgcttatagaatcagccaagtcataatcacatgagttcgacttttggtttagcgatttttggcctattgtt |
167 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21057806 |
tttcattaattccaattataagccatgcttgcttctagaatcagccaagtcataatcacatgagttccacttttggtttagcgatttttggcctattgtt |
21057905 |
T |
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| Q |
168 |
ttccatttgatagattaaaattgtattgtgttgtttggtgccttatctgttaggtgataggaatgcattttatgaatcctcccccagtgatgaaattgat |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21057906 |
ttccatttgatagattaaaattgtattgtgttgtttggtgccttatctgttaggtgataggaatgcattttatgaatcctcctccagtgatgaaattgat |
21058005 |
T |
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| Q |
268 |
tgagattgtgcgaggtgccgacacttct |
295 |
Q |
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| T |
21058006 |
tgagattgtgcgaggtgccgacacttct |
21058033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 20270951 - 20270996
Alignment:
| Q |
29 |
attggctgtaaacataaattgtaaacgggttctacattttttcatt |
74 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||| |||| |
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| T |
20270951 |
attggccgtaaacataaattgtaaacgggtcctacatttttccatt |
20270996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 21057579 - 21057624
Alignment:
| Q |
29 |
attggctgtaaacataaattgtaaacgggttctacattttttcatt |
74 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||| |||| |
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| T |
21057579 |
attggccgtaaacataaattgtaaacgggtcctacatttttccatt |
21057624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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