View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9241_low_34 (Length: 306)

Name: NF9241_low_34
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9241_low_34
NF9241_low_34
[»] chr3 (1 HSPs)
chr3 (16-306)||(43806678-43806968)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 43806678 - 43806968
Alignment:
Q  16 caataattgactgttgaaatgatgtcagcccaaggaggcaagaactgcacaattgtatttagcaagacgttggcctacacgtgcctgttgtatcacgtga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43806678 caataattgactgttgaaatgatgtcagcccaaggaggcaagaactgcacaattgtatttagcaagacgttggcctacacgtgcctgttgtatcacgtga 43806777  T
Q  116 cggagatgtgacgcagaattgcttgttttcttcattggtatgatatatcatgttttggaggtggattgttttgatgagtaatgtgagcttagatgttttg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43806778 cggagatgtgacgcagaattgcttgttttcttcattggtatgatataatatgttttggaggtggattgttttgatgagtaatgtgagcttagatgttttg 43806877  T
Q  216 cagctaaactggaattctaagtaagaactacgtttcatttaaaattggataccttttcttgtgatgccaatgtttttactggttcttttgc 306  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43806878 cagctaaactggaattctaagtaagagctacttttcatttaaaattggataccttttcttgtgatgccaatgtttttactggttcttttgc 43806968  T

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