View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9241_low_35 (Length: 297)

Name: NF9241_low_35
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9241_low_35
NF9241_low_35
[»] chr1 (5 HSPs)
chr1 (1-284)||(18618330-18618613)
chr1 (193-284)||(24035171-24035262)
chr1 (235-284)||(16560738-16560787)
chr1 (192-283)||(47762706-47762797)
chr1 (218-268)||(3550569-3550619)
[»] chr4 (4 HSPs)
chr4 (218-281)||(36186502-36186565)
chr4 (219-280)||(39734596-39734657)
chr4 (235-284)||(1586940-1586988)
chr4 (238-281)||(21327913-21327956)
[»] chr7 (2 HSPs)
chr7 (218-284)||(39825916-39825982)
chr7 (211-268)||(32182046-32182103)
[»] chr5 (2 HSPs)
chr5 (194-281)||(2588360-2588447)
chr5 (190-284)||(12966963-12967057)
[»] chr8 (2 HSPs)
chr8 (210-268)||(13854147-13854205)
chr8 (190-228)||(16636550-16636588)
[»] chr6 (1 HSPs)
chr6 (235-284)||(7763838-7763887)
[»] chr3 (1 HSPs)
chr3 (238-279)||(9197015-9197056)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 18618330 - 18618613
Alignment:
Q  1 atgatgcaaagagcaccaactacctatattcaaaataaaaagggaacaaggggaagctaggtcaaaacctttcaaacatttacaaatttgcagcttggta 100  Q
    |||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||    
T  18618330 atgatgcaaagagcaccatctaactatattcaaaataaaaggggaacaaggggaagctaagccaaaacctttcaaacatttacaaatttgtagcttggta 18618429  T
Q  101 aaccaagcctatttattagtaaatcaacatatttattaggagaattctttagtacctaaaatttgattgggtttcggtatattgcgaaaagggtcatact 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  18618430 aaccaagcctatttattagtaaattaacatatttattaggagaattctttagtacctagaatttgattgggtttccgtatattgcgaaaagggtcatact 18618529  T
Q  201 aacttatatccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 284  Q
    |||||||   |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18618530 aacttatgctcttaaggcacatattaagaattctattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 18618613  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 24035171 - 24035262
Alignment:
Q  193 gtcatactaacttatatccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 284  Q
    ||||| ||||||||| | ||||||||||||||||| ||||| |||||||  ||||||||||| ||||||||||||||||||||| |||||||    
T  24035171 gtcatgctaacttatgttcttagggcacatattaagaatttcattaataataaatatttattgtgaaaaattaattcttaactttttgagaa 24035262  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 16560738 - 16560787
Alignment:
Q  235 attaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 284  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  16560738 attaatagcaaatatttgttatgaaaaattaattcttaccttcttgagaa 16560787  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 47762706 - 47762797
Alignment:
Q  192 ggtcatactaacttatatccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttgaga 283  Q
    |||||| ||||||| |  |||||| |||||| |||| ||||   ||||||| |||||||||||||||||| |||||| ||||||| ||||||    
T  47762706 ggtcatgctaacttgtgcccttagagcacatgttaagaattcctttaataggaaatatttattatgaaaatttaatttttaacttattgaga 47762797  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 3550569 - 3550619
Alignment:
Q  218 cacatattaaaaattttattaatagcaaatatttattatgaaaaattaatt 268  Q
    ||||| |||| ||||  |||||||||||||||||||||||||||| |||||    
T  3550569 cacattttaagaattccattaatagcaaatatttattatgaaaaactaatt 3550619  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 36186502 - 36186565
Alignment:
Q  218 cacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttga 281  Q
    |||||||||| ||||  |||||||||||||||||||||||| ||||||||||||||||||||||    
T  36186502 cacatattaagaattcaattaatagcaaatatttattatgagaaattaattcttaacttcttga 36186565  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 39734596 - 39734657
Alignment:
Q  219 acatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttg 280  Q
    |||| |||| |||||||||||||| ||||||||||||| |||||||||||  ||||||||||    
T  39734596 acatgttaagaattttattaatagtaaatatttattataaaaaattaatttctaacttcttg 39734657  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 1586940 - 1586988
Alignment:
Q  235 attaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 284  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  1586940 attaatatcaaatatttattttgaaaa-ttaattcttaacttcttgagaa 1586988  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 21327913 - 21327956
Alignment:
Q  238 aatagcaaatatttattatgaaaaattaattcttaacttcttga 281  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||    
T  21327913 aatagtaaatatttattatgaaaaattaattttcaacttcttga 21327956  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 39825982 - 39825916
Alignment:
Q  218 cacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 284  Q
    ||||| |||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  39825982 cacatgttaagaatttcattaatagcaaatatttattataaaaatttaattcttaacttcttgagaa 39825916  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 32182103 - 32182046
Alignment:
Q  211 cttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaatt 268  Q
    ||||| |||| | |||| |||| ||||||||||||| ||||||| |||||||||||||    
T  32182103 cttagagcacgtgttaagaattctattaatagcaaacatttattctgaaaaattaatt 32182046  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 2588360 - 2588447
Alignment:
Q  194 tcatactaacttatatccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttga 281  Q
    |||| ||||||||| | |||||| ||||| |||| ||||| |||| | | ||||||||| ||||||||||||||||||||||||||||    
T  2588360 tcatgctaacttatgttcttaggacacatgttaagaatttcattagtggtaaatatttactatgaaaaattaattcttaacttcttga 2588447  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 284
Target Start/End: Complemental strand, 12967057 - 12966963
Alignment:
Q  190 agggtcatactaacttatatccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 284  Q
    |||||||| ||||| | | |||| ||||||||| |||| |||| ||  |||||||||||||||||  ||||||||| || | ||||| |||||||    
T  12967057 agggtcatgctaacatctgtcctaagggcacatgttaagaattctacaaatagcaaatatttattgagaaaaattagttttcaactttttgagaa 12966963  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 13854205 - 13854147
Alignment:
Q  210 ccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaatt 268  Q
    ||||| ||||||| |||| |||| |||||||||||||||||||||||||||||||||||    
T  13854205 ccttaaggcacatgttaagaattctattaatagcaaatatttattatgaaaaattaatt 13854147  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 16636588 - 16636550
Alignment:
Q  190 agggtcatactaacttatatccttagggcacatattaaa 228  Q
    |||||||||||||||||| || |||||||||||||||||    
T  16636588 agggtcatactaacttatgtctttagggcacatattaaa 16636550  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 7763838 - 7763887
Alignment:
Q  235 attaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 284  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  7763838 attaataacaaatatttattatgaaaaattaatttttaacttcatgagaa 7763887  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 9197015 - 9197056
Alignment:
Q  238 aatagcaaatatttattatgaaaaattaattcttaacttctt 279  Q
    |||| ||||||||||| |||||||||||||| ||||||||||    
T  9197015 aatatcaaatatttatcatgaaaaattaatttttaacttctt 9197056  T

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