View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9241_low_41 (Length: 253)
Name: NF9241_low_41
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9241_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 42495958 - 42496134
Alignment:
| Q |
20 |
taggcacactaaattatgtcggggtctaaattgcttagagttaaattcttgatattcacggcaaatatatatactattgagttgcttgaagaaagtgggt |
119 |
Q |
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| T |
42495958 |
taggcacactaaattatgtcggggtctaaattgcttagagttaaattcttgatattcacggcaaatatatatactattgagttgcttgaagaaagtgggt |
42496057 |
T |
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| Q |
120 |
cagctagctagacatgaaaccttcttcctagaaaacaataacttgtagaaattccatagcaagtttattgttttattct |
198 |
Q |
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| T |
42496058 |
cagctagctagacatgaaaccttcttcctagaaaacaataacttgtagaaat--catagcaagtttattgttttattct |
42496134 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 42493776 - 42493903
Alignment:
| Q |
20 |
taggcacactaaattatgtcggggtctaaattgctta------gagttaaattcttgatattcacggcaaatatatatactattgagttgcttgaagaaa |
113 |
Q |
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|||||||||| |||||||||||||| |||||||||| |||||||||| ||||| ||| |||||||| |||||||||||||||||||||| |
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| T |
42493776 |
taggcacactccattatgtcggggtcaaaattgcttaatcagagagttaaattattgatgatcagtgcaaatat----actattgagttgcttgaagaaa |
42493871 |
T |
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| Q |
114 |
gtgggtcagctagctagacatgaaaccttcttc |
146 |
Q |
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| T |
42493872 |
gt-ggtcagctagctaggcatgaaaccttcttc |
42493903 |
T |
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