View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9241_low_47 (Length: 226)

Name: NF9241_low_47
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9241_low_47
NF9241_low_47
[»] chr6 (8 HSPs)
chr6 (1-226)||(34383273-34383498)
chr6 (91-166)||(13627641-13627716)
chr6 (150-186)||(34103681-34103717)
chr6 (91-166)||(9231806-9231881)
chr6 (91-166)||(24694603-24694678)
chr6 (92-166)||(14309752-14309825)
chr6 (150-187)||(27863694-27863731)
chr6 (150-186)||(11279536-11279572)
[»] chr5 (11 HSPs)
chr5 (89-166)||(8456913-8456990)
chr5 (91-166)||(6257362-6257437)
chr5 (91-166)||(23218586-23218661)
chr5 (89-166)||(10081246-10081325)
chr5 (150-186)||(22903252-22903288)
chr5 (91-166)||(16618522-16618597)
chr5 (91-166)||(37168985-37169060)
chr5 (91-166)||(39862439-39862514)
chr5 (118-186)||(2676500-2676568)
chr5 (91-159)||(15631722-15631790)
chr5 (150-186)||(25560424-25560460)
[»] chr4 (12 HSPs)
chr4 (89-166)||(17888500-17888577)
chr4 (89-166)||(31377491-31377567)
chr4 (150-186)||(11054448-11054484)
chr4 (91-166)||(1535872-1535947)
chr4 (91-166)||(16338165-16338240)
chr4 (91-166)||(37801216-37801291)
chr4 (89-166)||(11054557-11054633)
chr4 (133-166)||(47084113-47084146)
chr4 (150-187)||(50328790-50328827)
chr4 (150-186)||(17888647-17888683)
chr4 (90-166)||(20818668-20818744)
chr4 (150-186)||(31377385-31377421)
[»] chr1 (11 HSPs)
chr1 (89-166)||(38859952-38860029)
chr1 (91-166)||(42517246-42517321)
chr1 (91-166)||(47022803-47022878)
chr1 (91-166)||(10155968-10156043)
chr1 (91-148)||(23908394-23908451)
chr1 (91-148)||(29149510-29149567)
chr1 (89-166)||(37189741-37189815)
chr1 (120-168)||(26511615-26511663)
chr1 (91-166)||(7742731-7742806)
chr1 (150-187)||(44107485-44107522)
chr1 (126-166)||(10907635-10907675)
[»] chr3 (8 HSPs)
chr3 (91-166)||(36539733-36539808)
chr3 (91-166)||(8950456-8950531)
chr3 (91-166)||(21853298-21853373)
chr3 (91-166)||(40845869-40845944)
chr3 (89-166)||(20382620-20382695)
chr3 (91-166)||(44994920-44994995)
chr3 (153-187)||(6280458-6280492)
chr3 (150-187)||(48206848-48206885)
[»] chr2 (10 HSPs)
chr2 (91-166)||(3597842-3597917)
chr2 (150-225)||(1387384-1387459)
chr2 (91-166)||(42769710-42769785)
chr2 (91-166)||(14186390-14186465)
chr2 (91-166)||(29846543-29846618)
chr2 (89-166)||(1386112-1386189)
chr2 (91-166)||(14941996-14942071)
chr2 (91-166)||(40277240-40277315)
chr2 (89-139)||(3956700-3956750)
chr2 (150-186)||(23685467-23685503)
[»] chr8 (6 HSPs)
chr8 (91-166)||(42072529-42072604)
chr8 (125-166)||(16591361-16591402)
chr8 (91-166)||(35806895-35806970)
chr8 (150-186)||(16591440-16591476)
chr8 (91-166)||(22324697-22324772)
chr8 (91-166)||(42013973-42014048)
[»] chr7 (9 HSPs)
chr7 (91-166)||(44164695-44164770)
chr7 (89-166)||(19334510-19334587)
chr7 (91-166)||(34707217-34707292)
chr7 (91-166)||(10576774-10576849)
chr7 (91-166)||(29238095-29238170)
chr7 (91-166)||(34259619-34259694)
chr7 (116-166)||(41853212-41853262)
chr7 (150-186)||(10334173-10334209)
chr7 (150-186)||(17303212-17303248)
[»] scaffold0079 (1 HSPs)
scaffold0079 (91-166)||(54620-54695)
[»] scaffold0016 (1 HSPs)
scaffold0016 (150-187)||(85505-85542)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 34383273 - 34383498
Alignment:
Q  1 agtttagtgaaactttggtctctgtttgatcttctcttcgcataggtgctcaatttctcgaacctctttactcaatttggctaagccgatgggcggttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34383273 agtttagtgaaactttggtctctgtttgatcttctcttcgcataggtgctcaatttctcgaacctctttactcaatttggctaagccgatgggcggttct 34383372  T
Q  101 atggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaacctttataaatgtgttgcaaannnnnnnnacccg 200  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||        |  ||    
T  34383373 atggcctggcgaccccgggtattcgcccgggctccggcctaaatttttcgcaatttcttatgcaaacctttataaatgtgttgcaaaatttttttaatcg 34383472  T
Q  201 aactttacaataatcctagctccgcc 226  Q
    ||||||||||||||||||||||||||    
T  34383473 aactttacaataatcctagctccgcc 34383498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 13627716 - 13627641
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| |||||||||| ||| ||| ||||| ||||| | |||||||| |||||||||| ||||||    
T  13627716 gggcggttctaaggcccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaa 13627641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 34103717 - 34103681
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34103717 gcaatttcttatgtaaacctttgtaaatgtgttgcaa 34103681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 9231806 - 9231881
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||  ||||||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  9231806 gggcggttctaaggctcggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 9231881  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 24694603 - 24694678
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||| ||||  |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  24694603 gggcggttctaaggcccggcaaccctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 24694678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 14309752 - 14309825
Alignment:
Q  92 ggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||| || |||| ||||||||||| || |||||||| ||| |||| |||||||| |||||||||| ||||||    
T  14309752 ggcggttataaggcccggcgaccccagacactcgcccggtttcgggcc-aaattttttgcaatttcttgtgtaaa 14309825  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 27863731 - 27863694
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaaa 187  Q
    |||||||||||||||||| | |||||||||||||||||    
T  27863731 gcaatttcttatgtaaacatctataaatgtgttgcaaa 27863694  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 11279572 - 11279536
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    ||||||||||||||||| || ||||||||||||||||    
T  11279572 gcaatttcttatgtaaatctctataaatgtgttgcaa 11279536  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 8456913 - 8456990
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||||| |||||||||| ||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  8456913 atgggcggttctatggcccggcgaccccatgcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaa 8456990  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 6257362 - 6257437
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  6257362 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 6257437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 23218661 - 23218586
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||| ||| |||| ||||||||||||||| | ||| |||| |||||||||| ||||||    
T  23218661 gggcggttctaaggcccggcgatcccgggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaa 23218586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 10081325 - 10081246
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaa--atttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||||| ||||| |||||||| ||||||||| || |||| ||   |||||  ||||||||||||||||    
T  10081325 atgggcggttctatggcccggcgatcccaggcactcgcccgggctctggcccaattttttttttcaatttcttatgtaaa 10081246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 22903288 - 22903252
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    |||||||||||||||||||| ||||||||||||||||    
T  22903288 gcaatttcttatgtaaacctctataaatgtgttgcaa 22903252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 16618522 - 16618597
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| ||||| | ||||||||  ||||||||| ||||||    
T  16618522 gggcggttctaaggcccggcgaccccgggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaa 16618597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 37168985 - 37169060
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| | ||||||| ||||| | |||||||| ||||||| || ||||||    
T  37168985 gggcggttctaaggcccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaa 37169060  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 39862439 - 39862514
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||||||| | ||||| | || ||||| |||||||||| ||||||    
T  39862439 gggcggttctaaggcccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaa 39862514  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 2676500 - 2676568
Alignment:
Q  118 ggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    |||| ||||||||| || || | || |||||  ||||||||||||||||||  ||||||||||||||||    
T  2676500 ggcactcgcccgggctctggtccaattttttttcaatttcttatgtaaacccctataaatgtgttgcaa 2676568  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 15631790 - 15631722
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttctt 159  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||| | | ||||||||  |||||||||    
T  15631790 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttctt 15631722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 25560424 - 25560460
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    |||||||||||||||||||  ||||||||||||||||    
T  25560424 gcaatttcttatgtaaacccatataaatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 17888500 - 17888577
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  17888500 atgggcggttctatggccaggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaa 17888577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 31377567 - 31377491
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  31377567 atgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaattttt-tcaatttcttatgtaaa 31377491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 11054484 - 11054448
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    |||||||||||||||||||||||||||||||||||||    
T  11054484 gcaatttcttatgtaaacctttataaatgtgttgcaa 11054448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 1535947 - 1535872
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||  |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  1535947 gggcggttctaaggcccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 1535872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 16338165 - 16338240
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| ||||||||||||| |||||| | || ||||| ||||||| || ||||||    
T  16338165 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaa 16338240  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 37801216 - 37801291
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| | ||| | |||||||||| ||||| ||||| |||||||||| |||||||||| ||||||    
T  37801216 gggcggttctaaggcccgacgatctcaggcattcgtccgggctccgggctaaattttttgcaatttcttgtgtaaa 37801291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 11054633 - 11054557
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||||| |||||||||  ||| || |||||| ||||| |  ||||||| |||||||||||||||||    
T  11054633 atgggcggttctatggcccggcgaccccgagcactcacccgggctccggtc-caattttttgcaatttcttatgtaaa 11054557  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 47084146 - 47084113
Alignment:
Q  133 tccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||| |||||||||||||||||    
T  47084146 tccggcctaaattttttgcaatttcttatgtaaa 47084113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 50328827 - 50328790
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaaa 187  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  50328827 gcaattttttatgtaaacccttataaatgtgttgcaaa 50328790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 17888647 - 17888683
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    |||||||||||||||||||  ||||||||||||||||    
T  17888647 gcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 20818744 - 20818668
Alignment:
Q  90 tgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||||||  | |||||| || |||| ||||||||| || | || |||||||| |||||||||| ||||||    
T  20818744 tgggcggttctatgatccggcgactccgggcactcgcccgggctctgacccaaattttttgcaatttcttttgtaaa 20818668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 31377421 - 31377385
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    |||||||||||||||||||  ||||||||||||||||    
T  31377421 gcaatttcttatgtaaaccgctataaatgtgttgcaa 31377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 38860029 - 38859952
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  38860029 atgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaa 38859952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 42517246 - 42517321
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  42517246 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 42517321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 47022878 - 47022803
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  47022878 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 47022803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 10155968 - 10156043
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  10155968 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 10156043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 23908451 - 23908394
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaattttt 148  Q
    ||||||||||| |||| |||||||||||||| ||||||||| ||||| | ||||||||    
T  23908451 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaattttt 23908394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 29149510 - 29149567
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaattttt 148  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||||| | ||||||||    
T  29149510 gggcggttttaaggcctggcgaccccaggcactcgcccgggctccggaccaaattttt 29149567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 37189815 - 37189741
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||||||||||  | || |||||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  37189815 atgggcggttctatggcc-agtga-cccaggcattcgcccggactccggcccaaattttt-gcaatttcttatgtaaa 37189741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 26511615 - 26511663
Alignment:
Q  120 cattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaacc 168  Q
    |||| ||||||| |||||||||| ||||| |||||||||||||||||||    
T  26511615 catttgcccgggctccggcctaatttttttgcaatttcttatgtaaacc 26511663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 7742731 - 7742806
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||  | || ||||| |||||||||| ||||||    
T  7742731 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaa 7742806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 44107485 - 44107522
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaaa 187  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  44107485 gcaatttcttatgtaaaaccttataaatgtgttgcaaa 44107522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 10907635 - 10907675
Alignment:
Q  126 cccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||| ||||||| |||||||| |||||||||||||||||    
T  10907635 cccgggctccggcccaaattttttgcaatttcttatgtaaa 10907675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 36539808 - 36539733
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||||||||| | | |||| ||||||||| |||||||||||||||  |||||||||||||||||    
T  36539808 gggcggttctaaggcctggcgagctcgggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaa 36539733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 8950456 - 8950531
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||||||||||||| |||| ||||||||| || || | |||||||| |||||||||| ||||||    
T  8950456 gggcggttctaaggcctggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaa 8950531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 21853373 - 21853298
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| ||||| | |||||||| |||||||||| ||||||    
T  21853373 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaa 21853298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 40845869 - 40845944
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||||||   |||||||| ||||||| || ||||||    
T  40845869 gggcggttctaaggcccggcgacctcgggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaa 40845944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 20382695 - 20382620
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||||| ||||||||| |||| | ||||||| ||||||| ||||||||   |||||||||||||||    
T  20382695 atgggcggttctatggcc-ggcgaccccgggcacttgcccgggctccggcccaaattttt-ttaatttcttatgtaaa 20382620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 44994920 - 44994995
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| || | |||| |||| ||||| | |||||||| |||||||||| ||||||    
T  44994920 gggcggttctaaggcccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaa 44994995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 6280458 - 6280492
Alignment:
Q  153 atttcttatgtaaacctttataaatgtgttgcaaa 187  Q
    |||| ||||||||||||||||||||||||||||||    
T  6280458 attttttatgtaaacctttataaatgtgttgcaaa 6280492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 48206885 - 48206848
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaaa 187  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  48206885 gcaatttcttatgtaaacacttataaatgtgttgcaaa 48206848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 3597842 - 3597917
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| |||||||||||||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  3597842 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 3597917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 1387384 - 1387459
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaaannnnnnnnacccgaactttacaataatcctagctccgc 225  Q
    ||||||||||||||||||| ||| ||||||||||||||        |||||||||||||||||||||| |||||||    
T  1387384 gcaatttcttatgtaaacccttacaaatgtgttgcaaattttttttacccgaactttacaataatcctggctccgc 1387459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 42769710 - 42769785
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  42769710 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 42769785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 14186390 - 14186465
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| |||||||||||||| ||||||| | ||||| | |||||||| | |||||||| ||||||    
T  14186390 gggcggttctaaggcccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaa 14186465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 29846618 - 29846543
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| | ||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  29846618 gggcggttctaaggcccgacgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 29846543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 1386112 - 1386189
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||||  | ||||||| |||| ||||||||| || | || || ||||| |||||||||||||||||    
T  1386112 atgggcggttctatggctcgacgaccccgggcactcgcccgggctcggacccaatttttttgcaatttcttatgtaaa 1386189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 14941996 - 14942071
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||  ||||||||| | || ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  14941996 gggcggttctaaggctcggcgaccccggacactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 14942071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 40277240 - 40277315
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| | | ||||| ||||| | |||||||| ||||||| |||||||||    
T  40277240 gggcggttctaaggcccggcgaccccgggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaa 40277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 3956750 - 3956700
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcc 139  Q
    |||||||||||||||||| || |||||| |||| ||||||||| |||||||    
T  3956750 atgggcggttctatggcccggtgaccccgggcactcgcccgggctccggcc 3956700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 23685467 - 23685503
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  23685467 gcaatttcttatgtaaacccttataaatatgttgcaa 23685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 42072604 - 42072529
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||| ||||||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  42072604 gggcggttctatggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 42072529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 16591361 - 16591402
Alignment:
Q  125 gcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  16591361 gcccgggttccggcctaaattttttgcaatttcttatgtaaa 16591402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 35806970 - 35806895
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| ||||| | |||||||| |||||||||| ||||||    
T  35806970 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaa 35806895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 16591440 - 16591476
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    ||||||||||||||||||| |||||||||||||||||    
T  16591440 gcaatttcttatgtaaacccttataaatgtgttgcaa 16591476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 22324772 - 22324697
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||| ||||| |||| ||||||||| ||||| | |||||||| | |||||||| ||||||    
T  22324772 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaa 22324697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 42014048 - 42013973
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| | | ||||||| ||| | |||||||| |||||||||| ||||||    
T  42014048 gggcggttctaaggcccggcgaccccgggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaa 42013973  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 44164695 - 44164770
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  44164695 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 44164770  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 19334510 - 19334587
Alignment:
Q  89 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||||||||||||||| ||||||||| | || || ||| |||| ||||| || ||||| |||||||||||||||||    
T  19334510 atgggcggttctatggcccggcgaccccggtcactcccccaggtttcggcccaatttttttgcaatttcttatgtaaa 19334587  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 34707292 - 34707217
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| | || ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  34707292 gggcggttctaagacccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 34707217  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 10576849 - 10576774
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| || | ||||||||| |||| || |||||| ||||| | |||||||| |||||||||| ||||||    
T  10576849 gggcggttctaaggtccggcgaccccgggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaa 10576774  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 29238095 - 29238170
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||| ||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  29238095 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 29238170  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 34259694 - 34259619
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| |||||| || |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  34259694 gggcggttctaaggcccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 34259619  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 41853262 - 41853212
Alignment:
Q  116 caggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||| ||||    
T  41853262 caggcactcgcccgggctccggcccaaattttttgcaatttcttatttaaa 41853212  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 10334209 - 10334173
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    |||||||||||||||||||  ||||||||||||||||    
T  10334209 gcaatttcttatgtaaacccctataaatgtgttgcaa 10334173  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 17303212 - 17303248
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaa 186  Q
    |||||||||||||||||||  ||||||||||||||||    
T  17303212 gcaatttcttatgtaaaccactataaatgtgttgcaa 17303248  T

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Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 54695 - 54620
Alignment:
Q  91 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 166  Q
    ||||||||||| |||| ||||||||| ||||||||||||| |||||| | || ||||| ||||||| || ||||||    
T  54695 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaa 54620  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 85542 - 85505
Alignment:
Q  150 gcaatttcttatgtaaacctttataaatgtgttgcaaa 187  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  85542 gcaatttcttatgtaaacctctataaatatgttgcaaa 85505  T

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