View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9241_low_7 (Length: 821)

Name: NF9241_low_7
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9241_low_7
NF9241_low_7
[»] chr1 (2 HSPs)
chr1 (22-805)||(27656197-27656980)
chr1 (46-129)||(28351315-28351398)
[»] chr7 (7 HSPs)
chr7 (445-587)||(41309954-41310096)
chr7 (445-562)||(41324645-41324762)
chr7 (223-286)||(41309780-41309843)
chr7 (74-134)||(9895276-9895336)
chr7 (729-775)||(41310313-41310359)
chr7 (223-290)||(41324478-41324545)
chr7 (74-128)||(38652447-38652501)
[»] chr3 (5 HSPs)
chr3 (45-141)||(20532502-20532598)
chr3 (138-207)||(16983938-16984007)
chr3 (137-206)||(20532624-20532692)
chr3 (45-106)||(47844140-47844201)
chr3 (90-141)||(21014360-21014411)
[»] chr5 (1 HSPs)
chr5 (45-141)||(18148205-18148301)
[»] chr2 (5 HSPs)
chr2 (85-141)||(44472935-44472991)
chr2 (49-128)||(7708836-7708915)
chr2 (71-116)||(26317580-26317625)
chr2 (75-136)||(37444722-37444783)
chr2 (97-130)||(17765481-17765514)
[»] chr6 (6 HSPs)
chr6 (161-208)||(3731346-3731393)
chr6 (140-209)||(33184916-33184984)
chr6 (45-141)||(33185013-33185109)
chr6 (150-207)||(10919711-10919768)
chr6 (97-134)||(15959333-15959370)
chr6 (95-129)||(10587381-10587415)
[»] chr8 (2 HSPs)
chr8 (76-141)||(45439370-45439434)
chr8 (75-109)||(9594695-9594729)
[»] chr4 (1 HSPs)
chr4 (75-128)||(2187028-2187081)


Alignment Details
Target: chr1 (Bit Score: 627; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 22 - 805
Target Start/End: Complemental strand, 27656980 - 27656197
Alignment:
22 ggtgaaacatagaggtaaaggtttttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
27656980 ggtgaaacatagaggtaaaggtttttgtggtggctgaaagctagcaagattaattttgttttcagtactcatttgtggtggtcgagcccacttttatttt 27656881  T
122 tgggcatcgactagctttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttggcctaatnnnnnnn 221  Q
    || | |||| ||||||||||||| |||| |||| |||| ||||||||||| |||||| | |||||||||||||||||||||||||||||| ||           
27656880 tgaggatcggctagctttttcgtgattgttttggcacgtcttgtgctgagacgattgtgctgtcagtgttaatataattcattttggcctgataaaaaaa 27656781  T
222 ngtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcacagcaaccttaactttgggaattctctgcattgtta 321  Q
     |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27656780 agtttaccttgcaaaagtaaaccccagaagagaagctttaatgtcctaaaaattatcttcttcacagcaaccttaactttgggaattctctgcattgtta 27656681  T
322 cttataggtcataatcaatggactatatagatatacatgaactagaatctagaaataatcatacaggaatgaggatatagctctttgttaatcaagtgac 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||||||||| |||||||    
27656680 cttataggtcataatcaatggactatatagatatacatgaactagaaactagaaacaatcatacaaaaatgaggatatagctctttgttaattaagtgac 27656581  T
422 attgcattacatgcatagtataatacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27656580 attgcattacatgcatagtataatacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatc 27656481  T
522 cattccatggagagtgatcaatttgaggataagctccaccaccatcatccaccaatatcatcaactgtaaatatttttagatcgtcaattaatatcgatt 621  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
27656480 cattccatggagagtgatcaattcgaggataagctccaccaccatcatccaccaatatcatcaactgtaaatattgttagatcgtcaattaatatcgatt 27656381  T
622 gtcagataattaaaaatattttattatcattacgactatttctaaagttacacatgtgatttgttatgatttattgatagcgttaaaagtatcttagaaa 721  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
27656380 gtcagataattaaaaatattttattttcattatgactacttctaaagttacacatatgatttgttatgatttattgatagcgttaaaagcatcttagaaa 27656281  T
722 agtatgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctacnnnnnnngtgcttaacctcttgctcct 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||    
27656280 agtatgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctactttttttgtgcttaatctcttgctcct 27656197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 28351398 - 28351315
Alignment:
46 ttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatc 129  Q
    ||||||||| |||||||||| ||   ||  ||| ||||| |||||| |||||||||||||||||||||| | ||||| ||||||    
28351398 ttgtggtggttgaaagctagtaacgctacctttattttcagtactcgtttgtggtggtcgagcccacttatgtgttttggcatc 28351315  T

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Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 445 - 587
Target Start/End: Original strand, 41309954 - 41310096
Alignment:
445 tacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatt 544  Q
    ||||||||||||||||||||| || || ||||| |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||     
41309954 tacctttaatgcaagagctatggccacaccaacgatgaaaagaaagaaaggcataacaaaatcagccaaagtacatccattccatggagagtgatcaatg 41310053  T
545 tgaggataagctccaccaccatcatccaccaatatcatcaact 587  Q
     | | ||||||||||||| |||| |||||||||||||||||||    
41310054 cgtgaataagctccaccagcatcgtccaccaatatcatcaact 41310096  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 445 - 562
Target Start/End: Original strand, 41324645 - 41324762
Alignment:
445 tacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatt 544  Q
    ||||||||||||||| ||||| ||||| |||||||||||||| || |||||||| || ||||||||||| |||||||||| ||| || |  ||||||||     
41324645 tacctttaatgcaagggctatggcaacaccaacaatgaaaagaaagaaaggcattacaaaatcagccaaagtacatccatcccacggggcatgatcaatg 41324744  T
545 tgaggataagctccacca 562  Q
     | |||||||||||||||    
41324745 cgtggataagctccacca 41324762  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 41309780 - 41309843
Alignment:
223 gtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcac 286  Q
    |||||||||||||||||| |||||| |||| |||||| |||||||| | |||||||||||||||    
41309780 gtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatcttcttcac 41309843  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 9895336 - 9895276
Alignment:
74 attttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgacta 134  Q
    |||||||||| |||| || | |||||||| ||||||| |||||||||||||||||||||||    
9895336 attttgtttttggtattcgtatgtggtggacgagcccgcttttatgtttgggcatcgacta 9895276  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 729 - 775
Target Start/End: Original strand, 41310313 - 41310359
Alignment:
729 actaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccc 775  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||    
41310313 actaaccacaatggtgaggcccctaaatgcatcaagtgttgcaaccc 41310359  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 41324478 - 41324545
Alignment:
223 gtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcacagca 290  Q
    ||||||||||||| |||| |||||| |||| ||| || ||||||||||  |||||||| |||||||||    
41324478 gtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatctttttcacagca 41324545  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 38652447 - 38652501
Alignment:
74 attttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 128  Q
    ||||| |||| || |||||| |||||||||||||||| ||| |||||||||||||    
38652447 attttatttttgggactcatatgtggtggtcgagcccgcttgtatgtttgggcat 38652501  T

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Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 20532502 - 20532598
Alignment:
45 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 141  Q
    |||||||||||||||||| || |||| |   ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||| |||||    
20532502 tttgtggtggctgaaagccagtaagactgcctttgttttcggcactcatttgtggtggtcgagcccacttatgtgtttgggcatcggctagattttt 20532598  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 16984007 - 16983938
Alignment:
138 ttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttg 207  Q
    ||||||| |||| |||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
16984007 ttttcgtgattgttttggcacgccttgtgctgaagcgattgcactgtcagtgttaatataattcattttg 16983938  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 20532624 - 20532692
Alignment:
137 tttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcatttt 206  Q
    |||||||| ||| ||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
20532624 tttttcgtgatttctttcgcacgccttgtactg-ggcgattgcgttgtcagtgttaatataattcatttt 20532692  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 47844140 - 47844201
Alignment:
45 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcga 106  Q
    |||||||||||| |||||||| |||   |||||| ||||||||| |||||||||||||||||    
47844140 tttgtggtggctaaaagctagaaaggccaattttattttcggtattcatttgtggtggtcga 47844201  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 21014411 - 21014360
Alignment:
90 tcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 141  Q
    |||||||||||||| |||||||||| | ||||||||||||| ||| ||||||    
21014411 tcatttgtggtggttgagcccacttatgtgtttgggcatcgtctaacttttt 21014360  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 18148205 - 18148301
Alignment:
45 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 141  Q
    |||||||||| |||||||||| ||   ||  ||||||||||||||||||||||||||||| ||| ||||| | |||||||| |||| ||||||||||    
18148205 tttgtggtggttgaaagctagtaacgctacctttgttttcggtactcatttgtggtggtcaagctcacttatgtgtttgggtatcggctagcttttt 18148301  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 44472991 - 44472935
Alignment:
85 ggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 141  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||    
44472991 ggtactcattcgtggtggtcgagccctcttttgtgtttgggcatcgactagtttttt 44472935  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 7708915 - 7708836
Alignment:
49 tggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 128  Q
    |||||||| |||||||  ||  ||||||||||||| |||| |||| |||||||||||||||| || || |||||||||||    
7708915 tggtggcttaaagctaagaaagttaattttgtttttggtattcatatgtggtggtcgagcccgctcttgtgtttgggcat 7708836  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 26317580 - 26317625
Alignment:
71 ttaattttgttttcggtactcatttgtggtggtcgagcccactttt 116  Q
    ||||||||||||| | || |||||||||||||||||||||||||||    
26317580 ttaattttgtttttgctattcatttgtggtggtcgagcccactttt 26317625  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 37444783 - 37444722
Alignment:
75 ttttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagc 136  Q
    |||| |||| || ||||||||||| ||||||||||| || || |||||||||||||||||||    
37444783 ttttatttttggcactcatttgtgatggtcgagccccctgttgtgtttgggcatcgactagc 37444722  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 130
Target Start/End: Original strand, 17765481 - 17765514
Alignment:
97 tggtggtcgagcccacttttatgtttgggcatcg 130  Q
    |||||||||||||||||||||||| |||||||||    
17765481 tggtggtcgagcccacttttatgtatgggcatcg 17765514  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 3731393 - 3731346
Alignment:
161 cttgtgctgaggcgattgcgttgtcagtgttaatataattcattttgg 208  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||    
3731393 cttgtgctgaagcaattgcgttgtcagtgttaatataattcattttgg 3731346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 33184984 - 33184916
Alignment:
140 ttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttggc 209  Q
    ||||| |||| |||| ||||||||||||||| || |||||| ||||||||||||| ||||||||||||||    
33184984 ttcgtgattgttttggcacgccttgtgctgaagcaattgcgatgtcagtgttaat-taattcattttggc 33184916  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 33185109 - 33185013
Alignment:
45 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 141  Q
    |||||||||| |||||||||| ||   ||  |||| |||| |||||||||| |||||||||||||||||| | ||| || ||||| |||||||||||    
33185109 tttgtggtggttgaaagctagtaatgctacatttgctttcagtactcatttttggtggtcgagcccacttatgtgtgtgtgcatcaactagcttttt 33185013  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 10919768 - 10919711
Alignment:
150 ctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttg 207  Q
    ||||| |||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
10919768 ctttggcacgtcttgtgctgaagtaattacgttgtcagtgttaatataattcattttg 10919711  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 15959333 - 15959370
Alignment:
97 tggtggtcgagcccacttttatgtttgggcatcgacta 134  Q
    |||||||||||||||||||||||| |||||||||||||    
15959333 tggtggtcgagcccacttttatgtatgggcatcgacta 15959370  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 10587381 - 10587415
Alignment:
95 tgtggtggtcgagcccacttttatgtttgggcatc 129  Q
    |||||||||||||||||||| ||||||||||||||    
10587381 tgtggtggtcgagcccacttgtatgtttgggcatc 10587415  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 45439370 - 45439434
Alignment:
76 tttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 141  Q
    |||||||| |||||||||| |||| |||||||||||||| | ||||||||||||| ||||||||||    
45439370 tttgtttttggtactcatt-gtggcggtcgagcccacttgtgtgtttgggcatcggctagcttttt 45439434  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 9594695 - 9594729
Alignment:
75 ttttgttttcggtactcatttgtggtggtcgagcc 109  Q
    |||||||||||| ||||||||||||||||||||||    
9594695 ttttgttttcggcactcatttgtggtggtcgagcc 9594729  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 2187081 - 2187028
Alignment:
75 ttttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 128  Q
    ||||||||| || |||||| |||||||||||||||| ||| | |||||||||||    
2187081 ttttgtttttgggactcatatgtggtggtcgagcccgcttgtttgtttgggcat 2187028  T

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