View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9241_low_9 (Length: 626)
Name: NF9241_low_9
Description: NF9241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9241_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 6602738 - 6602205
Alignment:
| Q |
1 |
gaaaataaaataacactctttcaatctagctcccttaaacatcatatgtaaactatgcactatactaatttggagactatttttaatagactcatgcatc |
100 |
Q |
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| T |
6602738 |
gaaaataaaataacactctttcaatctagctcccttaaacatcatatgtaaactatgcactatactaatttggagactatttttaatatactcatgcatc |
6602639 |
T |
|
| Q |
101 |
atcttgccacttagagcagaaattttggacttgtaacaagcttaatagataaggacaatcatagtggctctgccactctataaaaactgtgttaacaatt |
200 |
Q |
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| T |
6602638 |
atcttgccacttagagcagaaattttggacttgtaacaaacttaacagataaggacaatcatagtggctctgccactctataaaaactatgttaacaatt |
6602539 |
T |
|
| Q |
201 |
aacaagtgctattttttccttctataaattgtttcatcttacaacttatattgtcacacaaagttctaattaattttgtcaacatatatagtttcaactc |
300 |
Q |
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| T |
6602538 |
aacaagtgctattttttccttctataaattgtttcagcttacaacttat--tgtcacacaaagttctaattaagtttgtcaacata----gtttcagctc |
6602445 |
T |
|
| Q |
301 |
atggagtgtgtctataacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccacttgtgtgctctcaactatattacaatttctataaca |
400 |
Q |
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| T |
6602444 |
atggagtgtgtctctaacaaacatgtttttattttcatgttttgtcttgtgtttcttactccacttgtgtgctctcaactatattacaatttctataaca |
6602345 |
T |
|
| Q |
401 |
gaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatgattctaggattgctgcttctctcttgcgccttcatttcca |
500 |
Q |
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| T |
6602344 |
gaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatgattctaggattgctgcttctctcttgcgccttcatttcca |
6602245 |
T |
|
| Q |
501 |
tgattgttttgttaatgtaattaagctctctcaattgttg |
540 |
Q |
| |
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| T |
6602244 |
tgattgttttgttaatgtaattaagctctctcaattgttg |
6602205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 288 - 525
Target Start/End: Complemental strand, 6609972 - 6609735
Alignment:
| Q |
288 |
atagtttcaactcatggagtgtgtctataacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccacttgtgtgctctcaactatattac |
387 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
6609972 |
atagtttcaactcatggagtgtgtctctaacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccaaatgtgtgctctcaactctattac |
6609873 |
T |
|
| Q |
388 |
aatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatgattctaggattgctgcttctctcttgc |
487 |
Q |
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| T |
6609872 |
aacttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagctatagctaatgactcaaggattgctgcttctctcttgc |
6609773 |
T |
|
| Q |
488 |
gccttcatttccatgattgttttgttaatgtaattaag |
525 |
Q |
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| T |
6609772 |
gccttcatttccatgattgttttgtcaatgtaattaag |
6609735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 151 - 272
Target Start/End: Complemental strand, 6610139 - 6610017
Alignment:
| Q |
151 |
aaggacaatcatagtggctctgccactct--ataaaaactgtgttaacaattaacaagtg-ctattttttccttctataaattgtttcatcttacaactt |
247 |
Q |
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||||||||| ||||||||||||||||||| ||||||||| | |||||| ||||||||| | ||||||| ||||||||||| ||||| |||||| || |
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| T |
6610139 |
aaggacaattatagtggctctgccactctcaataaaaactattgtaacaactaacaagtgttttttttttctttctataaattatttcagcttacagct- |
6610041 |
T |
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| Q |
248 |
atattgtcacacaaagttctaatta |
272 |
Q |
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|||||||||||| | ||||||||| |
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| T |
6610040 |
-tattgtcacacacaattctaatta |
6610017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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