View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9242_low_10 (Length: 295)

Name: NF9242_low_10
Description: NF9242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9242_low_10
NF9242_low_10
[»] chr1 (4 HSPs)
chr1 (19-278)||(6483430-6483689)
chr1 (31-87)||(47102202-47102258)
chr1 (31-83)||(25444464-25444516)
chr1 (31-83)||(41391261-41391313)
[»] scaffold0078 (1 HSPs)
scaffold0078 (31-89)||(32849-32907)
[»] chr3 (8 HSPs)
chr3 (31-89)||(3327708-3327766)
chr3 (31-89)||(4386368-4386426)
chr3 (31-87)||(6794088-6794144)
chr3 (31-87)||(22172530-22172586)
chr3 (31-87)||(1306680-1306736)
chr3 (31-83)||(2676446-2676498)
chr3 (31-83)||(28503191-28503243)
chr3 (31-83)||(32476149-32476201)
[»] chr6 (3 HSPs)
chr6 (29-89)||(24435293-24435353)
chr6 (31-87)||(14741794-14741850)
chr6 (31-83)||(33335302-33335354)
[»] chr8 (6 HSPs)
chr8 (31-89)||(18869890-18869948)
chr8 (33-87)||(26402547-26402601)
chr8 (31-89)||(33037153-33037211)
chr8 (31-87)||(26297192-26297248)
chr8 (31-87)||(26310449-26310505)
chr8 (31-83)||(35741198-35741250)
[»] chr7 (7 HSPs)
chr7 (31-87)||(12397568-12397624)
chr7 (31-87)||(21640499-21640555)
chr7 (31-87)||(9189368-9189424)
chr7 (31-87)||(18409475-18409531)
chr7 (31-83)||(20000410-20000462)
chr7 (31-87)||(21983942-21983998)
chr7 (31-83)||(24265549-24265601)
[»] chr5 (9 HSPs)
chr5 (31-87)||(27445642-27445698)
chr5 (31-87)||(28832868-28832924)
chr5 (31-83)||(31401218-31401270)
chr5 (31-87)||(43592930-43592986)
chr5 (31-87)||(43625724-43625780)
chr5 (31-87)||(19589102-19589158)
chr5 (31-83)||(28806948-28807000)
chr5 (31-83)||(33768848-33768900)
chr5 (31-83)||(37560819-37560871)
[»] chr4 (4 HSPs)
chr4 (31-87)||(9228554-9228610)
chr4 (31-89)||(18856385-18856443)
chr4 (31-87)||(3792355-3792411)
chr4 (31-87)||(6742758-6742814)
[»] scaffold0259 (1 HSPs)
scaffold0259 (31-83)||(1611-1663)
[»] scaffold0197 (2 HSPs)
scaffold0197 (31-83)||(13656-13708)
scaffold0197 (31-83)||(18535-18587)
[»] chr2 (1 HSPs)
chr2 (31-87)||(39483575-39483631)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 6483689 - 6483430
Alignment:
Q  19 ctcaccattgttgaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctaggtagtgaaatgtgacaggatgagaggaactgt 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6483689 ctcaccatcgttgaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctaggtagtgaaatgtgacaggatgagaggaacttt 6483590  T
Q  119 gttaaatgtgatggaatcggtgttggagttatcatcttagtgtttgtaagtgaaaaatgtgtgaattgatggtggcaaagatagagacagtcgtgacaag 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6483589 gttaaatgtgatggaatctgtgttggagttatcatcttagtgtttgtaagtgaaaaatgtgtgaattgatggtggcaaagatagagacagtcgtgacaag 6483490  T
Q  219 ctgcggattggaccgtaaaatacagatttaagggtggggttctcacacgtgtcggggcac 278  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6483489 ctgcggattggaccgaaaaatacagatttaagggtggggttctcacacgtgtcggggcac 6483430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 47102258 - 47102202
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||||||||| ||||||||||| ||||||  |||||| |||||||||||    
T  47102258 gaattactcttcaacaaacttgatcaagtccaagcaatgcttgaaccttgatctagg 47102202  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 25444516 - 25444464
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  25444516 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 25444464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 41391261 - 41391313
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  41391261 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 41391313  T

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Target: scaffold0078 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 32849 - 32907
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctaggta 89  Q
    ||||||| |||||||||| ||||||||||||||||||  |||||| |||||||||||||    
T  32849 gaattactcttcaacaaacttgatcaagtctaagcaatgcttgaaccttgatctaggta 32907  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 3327766 - 3327708
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctaggta 89  Q
    ||||||| |||||||||| ||||||||||| ||||||  ||||||||||||||||||||    
T  3327766 gaattactcttcaacaaacttgatcaagtccaagcaatgcttgaatcttgatctaggta 3327708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 4386426 - 4386368
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctaggta 89  Q
    ||||||| ||||||||||||||| |||||| ||||||  |||||| |||||||||||||    
T  4386426 gaattactcttcaacaaaattgaccaagtccaagcaattcttgaaccttgatctaggta 4386368  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 6794144 - 6794088
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||||||||| ||||||||||| ||||||  |||||| |||||||||||    
T  6794144 gaattactcttcaacaaacttgatcaagtccaagcaatgcttgaaccttgatctagg 6794088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 22172586 - 22172530
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||||||    
T  22172586 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatctagg 22172530  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 1306680 - 1306736
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||  |||||| |||||||||||    
T  1306680 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaaccttgatctagg 1306736  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 2676498 - 2676446
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  2676498 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 2676446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 28503243 - 28503191
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  28503243 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 28503191  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 32476149 - 32476201
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  32476149 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 32476201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 24435353 - 24435293
Alignment:
Q  29 ttgaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctaggta 89  Q
    ||||||||| |||||||||| ||||||||||| ||||||  |||||| |||||||||||||    
T  24435353 ttgaattactcttcaacaaacttgatcaagtccaagcaatgcttgaaccttgatctaggta 24435293  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 14741850 - 14741794
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||||||    
T  14741850 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatctagg 14741794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 33335354 - 33335302
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  33335354 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 33335302  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 18869948 - 18869890
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctaggta 89  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||||||||    
T  18869948 gaattactcttcgacaaatttgatcaagtccaagcaatgcttgaatcttgatctaggta 18869890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 26402601 - 26402547
Alignment:
Q  33 attacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||| |||||||||| ||||||||||| |||||| ||||||| |||||||||||    
T  26402601 attactcttcaacaaacttgatcaagtccaagcaatacttgaaccttgatctagg 26402547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 33037211 - 33037153
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctaggta 89  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||||||||    
T  33037211 gaattactcttcgacaaatttgatcaagtccaagcaatgcttgaatcttgatctaggta 33037153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 26297192 - 26297248
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||   |||||||||||||||||    
T  26297192 gaattactcttcgacaaacttgatcaagtccaagcaatgtttgaatcttgatctagg 26297248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 26310449 - 26310505
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||   |||||||||||||||||    
T  26310449 gaattactcttcgacaaacttgatcaagtccaagcaatgtttgaatcttgatctagg 26310505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 35741198 - 35741250
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  35741198 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 35741250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 12397568 - 12397624
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||||||    
T  12397568 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatctagg 12397624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 21640499 - 21640555
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||||||    
T  21640499 gaattactcttcgacaaatttgatcaagtccaagcaatgcttgaatcttgatctagg 21640555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 9189424 - 9189368
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||||||||| ||||||||||  ||||||  |||||| |||||||||||    
T  9189424 gaattactcttcaacaaacttgatcaagttcaagcaatgcttgaaccttgatctagg 9189368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 18409475 - 18409531
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||  |||||| |||||||||||    
T  18409475 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaaccttgatctagg 18409531  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 20000410 - 20000462
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  20000410 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 20000462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 21983942 - 21983998
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| ||||||| || ||||||||||| ||||||  |||||| |||||||||||    
T  21983942 gaattactcttcaacgaacttgatcaagtccaagcaatgcttgaaccttgatctagg 21983998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 24265601 - 24265549
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  24265601 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 24265549  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 27445642 - 27445698
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||||||    
T  27445642 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatctagg 27445698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 28832868 - 28832924
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||||||||| ||||||||||| ||||||  |||||| |||||||||||    
T  28832868 gaattactcttcaacaaacttgatcaagtccaagcaatgcttgaaccttgatctagg 28832924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 31401270 - 31401218
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||||||||||||||| ||||||  ||||||||||||||    
T  31401270 gaattactcttcgacaaaattgatcaagtccaagcaatgcttgaatcttgatc 31401218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 43592930 - 43592986
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||||||    
T  43592930 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatctagg 43592986  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 43625724 - 43625780
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||||||    
T  43625724 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatctagg 43625780  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 19589102 - 19589158
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| ||||| |||| ||||||||||| ||||||  |||||| |||||||||||    
T  19589102 gaattactcttcatcaaacttgatcaagtccaagcaatgcttgaaccttgatctagg 19589158  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 28807000 - 28806948
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  28807000 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 28806948  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 33768848 - 33768900
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  33768848 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 33768900  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 37560871 - 37560819
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  37560871 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 37560819  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 9228610 - 9228554
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||||||    
T  9228610 gaattactcttcgacaaatttgatcaagtccaagcaatgcttgaatcttgatctagg 9228554  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 18856385 - 18856443
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctaggta 89  Q
    ||||||| |||| ||||| ||||||||||| ||||||  |||||||||||||| |||||    
T  18856385 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatcgaggta 18856443  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 3792411 - 3792355
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||||| ||| ||||||||||| ||||||  |||||| |||||||||||    
T  3792411 gaattactcttcaaaaaacttgatcaagtccaagcaatgcttgaaccttgatctagg 3792355  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 6742814 - 6742758
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||||| ||| ||||||||||| ||||||  |||||| |||||||||||    
T  6742814 gaattactcttcaataaacttgatcaagtccaagcaatgcttgaaccttgatctagg 6742758  T

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Target: scaffold0259 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 1663 - 1611
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    |||||||  ||| ||||||||||||||||| ||||||  ||||||||||||||    
T  1663 gaattacttttcgacaaaattgatcaagtccaagcaatgcttgaatcttgatc 1611  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 13708 - 13656
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  13708 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 13656  T

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Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 18587 - 18535
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatc 83  Q
    ||||||| |||| ||||| ||||||||||| ||||||  ||||||||||||||    
T  18587 gaattactcttcgacaaacttgatcaagtccaagcaatgcttgaatcttgatc 18535  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 39483575 - 39483631
Alignment:
Q  31 gaattacacttcaacaaaattgatcaagtctaagcaacacttgaatcttgatctagg 87  Q
    ||||||| |||||| ||| ||||||||||| ||||||  |||||| |||||||||||    
T  39483575 gaattactcttcaataaacttgatcaagtccaagcaatgcttgaaccttgatctagg 39483631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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