View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9242_low_11 (Length: 291)
Name: NF9242_low_11
Description: NF9242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9242_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 4952989 - 4952939
Alignment:
| Q |
227 |
ggagacatgaggactcaaactcattgcctcacgatacaaaaggcctttaat |
277 |
Q |
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| T |
4952989 |
ggagacatgaggactcaaactcatggcctcacgatacaaaaggcctttaat |
4952939 |
T |
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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4953073 - 4953032
Alignment:
| Q |
1 |
ggcatatttatagacaaacaaagtaggttggaattagctcgg |
42 |
Q |
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| T |
4953073 |
ggcatatttatagacaaacaaagtaggttggaattagctcgg |
4953032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 30350007 - 30349904
Alignment:
| Q |
48 |
tggatcttgactaactttttagagggtgcaaaatattcataacatgtgtgtatatatataagtgttttcataactagatacaaattgttatatggtatag |
147 |
Q |
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| T |
30350007 |
tggatcttgactaattttttag-gggtgccaaatattcataac----gtatatatatgtaagtgttttcatgtgtaaatacaaattgtaatatggggtag |
30349913 |
T |
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| Q |
148 |
acggttgtt |
156 |
Q |
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| T |
30349912 |
atggttgtt |
30349904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 27099347 - 27099411
Alignment:
| Q |
98 |
tatatatataagtgttttcataactagatacaaattgttatatggtatagacggttgttgtgctt |
162 |
Q |
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| T |
27099347 |
tatatatataagtgttttcatgagtatatacaaattgtaatatgaggtagatggttgttgtgctt |
27099411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 7098173 - 7098312
Alignment:
| Q |
49 |
ggatcttgactaactttttagagggtgcaaaatattcataacatgtgtgtatatatataagtgttttcataactagatacaaattgttatatggtataga |
148 |
Q |
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| T |
7098173 |
ggatcttgactaattttttagggggtgccaaatattcataac----ttctatatatataaacgttttcatgagcaaatacaaattgttatctggtgaaga |
7098268 |
T |
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| Q |
149 |
cggttgttgtgcttaattactg-ttcaaggtcaatggtttgaat |
191 |
Q |
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| T |
7098269 |
tgattgctgtgcttatttattgctttagggtcaatggttcgaat |
7098312 |
T |
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