View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9242_low_3 (Length: 342)
Name: NF9242_low_3
Description: NF9242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9242_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 35129145 - 35128831
Alignment:
| Q |
13 |
gtttagagtattatttaatttttt--aattcagacatggtgagccatgtgatggacataga-ccatctagattgcttgtctaatatatgtttccaaatag |
109 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
35129145 |
gtttagagtattatttgattttttttaattcagacatagtgagccatgtgatggacatagaaccatctagattgcttgtctaatatatattttcaaatag |
35129046 |
T |
|
| Q |
110 |
tagaacatcaaaattcagccactaaatctacaataaataaaattgtttgactaagatctaacggttaaaattttgaaatcacataatcatatttnnnnnn |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35129045 |
tagaacatcaaaattcagccactaaatctacaataaataaaattgtttgactaagatctaacggttaaaattttgaaatcacataatcatatttaaaaaa |
35128946 |
T |
|
| Q |
210 |
nnnntttaagatcttgcattgcgttctatatcaaaatcgtaccctcaatattattgcttctagaattccaattttttgtagaaatggattggagcaccct |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
35128945 |
caaatttaagatcttgcattgcgttctatatcaaaatcgtaccctcaatattattgcttctagaattccaatattttgtagaaatggattggagcagcct |
35128846 |
T |
|
| Q |
310 |
atgacggcacttttt |
324 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
35128845 |
atgatggcacttttt |
35128831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 35131972 - 35132142
Alignment:
| Q |
31 |
ttttttaattcagacatggtgagccatgtgatggacataga-ccatctagattgcttgtctaatatatgtttccaaatagtagaacatcaaaattcagcc |
129 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||| ||||| |||||||||||||||| |||| ||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
35131972 |
tttttttattcacatacggtgagccatgtgatggatatagaaccatctagattgcttgagtaatctatatttccaaagggtagaacatcaaaatccagcc |
35132071 |
T |
|
| Q |
130 |
actaaatctacaataaataaaattgtttgactaagatctaacggttaaaattttgaaatcacataatcata |
200 |
Q |
| |
|
| || |||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35132072 |
attagatctacaataaacaaaattgtttgattaagatctaacaattaaaattttgaaatcacataatcata |
35132142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 299
Target Start/End: Complemental strand, 35097794 - 35097525
Alignment:
| Q |
31 |
ttttttaattcagacatggtgagccatgtgatggacataga-ccatctagattgcttgtctaatatatgtttccaaatagtagaacatcaaaattcagcc |
129 |
Q |
| |
|
|||||||||||| |||| |||||||| |||| ||| ||||| ||| |||||||||||| ||||| ||| ||| |||| |||| ||||||||| || || |
|
|
| T |
35097794 |
ttttttaattcacacatagtgagccaggtgaaggatatagaaccaactagattgcttgactaatctatattttcaaaggataga-catcaaaatccaacc |
35097696 |
T |
|
| Q |
130 |
actaaatctacaataaataaaattgtttgactaagatctaacggttaaaattttgaaatcacataatcatatttnnnnnnnnnntttaagatcttgcatt |
229 |
Q |
| |
|
| || |||||||||||| |||| ||||||| |||||| |||| |||| |||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
35097695 |
attagatctacaataaacaaaactgtttgattaagatttaacagttataattttgaaatcacataatcatatttaaaaaacaaatttaagatcttgtatt |
35097596 |
T |
|
| Q |
230 |
gcgttctat-atcaaaatcgtaccctcaatattattgcttctagaattccaattttttgtagaaatggatt |
299 |
Q |
| |
|
| ||||||| || || |||||||| ||| |||||||||||||| | |||||||||| | ||||||||||| |
|
|
| T |
35097595 |
gtgttctataattaagatcgtaccatcagtattattgcttctataggtccaatttttcggagaaatggatt |
35097525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 35654747 - 35655050
Alignment:
| Q |
7 |
tttggtgtttagagtattatttaatttttt--aattcagacatggtgagccatgtgatggacatagacc-atctagattgcttgtctaatatatgtttcc |
103 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| | ||| | |||||||||| || || | ||| ||| | |
|
|
| T |
35654747 |
tttgatgtttagagtattatttgatttttttaaattcacacatggtgagccatgtgatggatagagaactatctagattgtttaactggtctatattttc |
35654846 |
T |
|
| Q |
104 |
aaatagtagaacatcaaaattcagccactaaatctacaataaataaaattgtttgactaagatctaacggttaaaattttgaaatcacataatcatattt |
203 |
Q |
| |
|
|| ||||||||||||||| || ||| || |||||||||||| ||||| |||||| || |||||||| |||||||||||||||| | ||||||| |
|
|
| T |
35654847 |
gaagggtagaacatcaaaatccaaccattagatctacaataaacaaaatcgtttgattatgatctaacagttaaaattttgaaat---agaatcata--- |
35654940 |
T |
|
| Q |
204 |
nnnnnnnnnntttaagatcttgcattgcgttctat-atcaaaatcgtaccctcaatattattgcttctagaattccaattttttgtagaaatggattgga |
302 |
Q |
| |
|
|| |||||||||||| |||||| ||||||||||||| |||||||| |||||||| ||| | |||||||| |||||||||||||| |
|
|
| T |
35654941 |
------------tatgatcttgcattgtcttctataatcaaaatcgtacgatcaatattgttgcttctggaaattcaatttttcaaagaaatggattgga |
35655028 |
T |
|
| Q |
303 |
gcaccctatgacggcacttttt |
324 |
Q |
| |
|
|||||||| || || ||||||| |
|
|
| T |
35655029 |
gcaccctacgatggtacttttt |
35655050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 35132165 - 35132225
Alignment:
| Q |
264 |
tgcttctagaattccaattttttgtagaaatggattggagca-ccctatgacggcactttt |
323 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||| |||||||| || |||||| |
|
|
| T |
35132165 |
tgcttctagaagtccaattttttggagaaatggattggagcatccctatgatggtactttt |
35132225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 25682250 - 25682312
Alignment:
| Q |
141 |
aataaataaaattgtttgactaagatctaacggttaaaattttgaaatcacataatcatattt |
203 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||| |||| ||||| |||||||||||||||||| |
|
|
| T |
25682250 |
aataaacaaaattgtttgattaagatcaaacagttaggattttagaatcacataatcatattt |
25682312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University