View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9242_low_5 (Length: 319)
Name: NF9242_low_5
Description: NF9242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9242_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 45144746 - 45144446
Alignment:
| Q |
1 |
aaacttttgattgaaagagactaaccataaagccaaaagcgaaagtgccaatgacagagttaataagagaaatagcagaaagttgaatgtcgccaagatg |
100 |
Q |
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| T |
45144746 |
aaacttttgattgaaagagactaaccatgaagccaaaagcgaaagtgccaatgacagagttaataagagaaatagcagaaagttgaatgtcgccaagatg |
45144647 |
T |
|
| Q |
101 |
accaacgaagatattggtgatagagttaacaccatattgacacaatatgttgaaaactattggcaatgcaattttccatattctcaatgtttcaatggcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144646 |
accaacgaagatattggtgatagagttaacaccatattgacacaatatgttgaaaactattggcaatgcaattttccatattctcaatgtttcaatggcg |
45144547 |
T |
|
| Q |
201 |
aatactttccttgcttgcttgaaccctttcacttccaagtagtcgccaccgtctacctccaataactcagacgaagatgacgtcgccgccgtggtgttga |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144546 |
aatactttccttgcttgtttgaaccctttcacttccaagtagtcgccaccgtctaactccaataactcagacgaagatgacgtcgccgccgtggtgttga |
45144447 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
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| |
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| T |
45144446 |
g |
45144446 |
T |
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