View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_high_11 (Length: 268)
Name: NF9243_high_11
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 7052097 - 7051846
Alignment:
| Q |
15 |
attattacaagtaaatcaccttccaataatgaaatcatggaaataaacacataaagaatgaatatttagacttgtagagctatcacaacaagaactaagt |
114 |
Q |
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| T |
7052097 |
attattacaagtaaatcaccttccaataatgaaatcatggaaatcaacacataaagaatgaatatttagacttgtagagctatcacaacaagaactaagt |
7051998 |
T |
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| Q |
115 |
acatattataa-----ccacatgacatgactaatataaatcatagttct--ttagtacaaattttggattaacttaagtaaatgaaatcaatgttgaatt |
207 |
Q |
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| T |
7051997 |
acatattataaccactccacatgacatgactaatataaatcatagttctcaccagtacaaattttggattaacttaagtaaatgaaattaatgtcaaatt |
7051898 |
T |
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| Q |
208 |
attgagttattataaacacctttgtccatgattgtggcctcaacaccaaact |
259 |
Q |
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| T |
7051897 |
attgaggtattataaacacctttgtccatgattgtggtctcaagaccaaact |
7051846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 6993587 - 6993331
Alignment:
| Q |
7 |
tcattaacattattacaagtaaatcaccttccaataatgaaatcatggaaataaa-cacataaagaatgaatatttagacttgtagagctatcaca---a |
102 |
Q |
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| T |
6993587 |
tcattagcattactaccggtaaatgaccttccaataatgaaatcatgaaagtaaaacataaaaagagagaatattttgacttgtaga---atcacactaa |
6993491 |
T |
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| Q |
103 |
caagaacta---agtacatattataaccacatgacatgactaatataaatcatagttctttagtacaaattttggattaacttaagtaaatgaaatcaat |
199 |
Q |
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| T |
6993490 |
cacaaactatatactacatattataaccacatgacatgactaatataaatcatagttctttagtacaaattttggattaacttaagtaaatgaaatcaat |
6993391 |
T |
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| Q |
200 |
gttgaattattgagttattataaacacctttgtccatgattgtggcctcaacaccaaact |
259 |
Q |
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| T |
6993390 |
gttgaattattgagttattatcaacacctttgtccatgactgtggcctcaagaccaaact |
6993331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 7046048 - 7045944
Alignment:
| Q |
145 |
taaatcatagttctt--tagtacaaattttggattaacttaagtaaatgaaatcaatgttgaattattgagttattataaacacctttgtccatgattgt |
242 |
Q |
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| T |
7046048 |
taaatcatagttcttattagtacaaattttagattaacttaagtaaatgaaatcaatgctgaattattgagttgttaccaacacctttgtccatgactgt |
7045949 |
T |
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| Q |
243 |
ggcct |
247 |
Q |
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||||| |
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| T |
7045948 |
ggcct |
7045944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 7019453 - 7019365
Alignment:
| Q |
171 |
ttggattaacttaagtaaatgaaatcaatgttgaattattgagttattataaacacctttgtccatgattgtggcctcaacaccaaact |
259 |
Q |
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| T |
7019453 |
ttggattaacttcaatgaatgaaatcaattttgagtaattgaggtgttatcaacacctttgtccatgaatgtggcctcaagaccaaact |
7019365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7003711 - 7003622
Alignment:
| Q |
1 |
aaaatatcattaacattattacaagtaaatcaccttccaataatgaaatcatggaaataaacacataaagaatgaatatttagacttgta |
90 |
Q |
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| T |
7003711 |
aaaagatcattaacattactacgagtaaatcaccttccaataatgaaatcaggaaaagaaacataaatagaacggatatttatacttgta |
7003622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 7013151 - 7013019
Alignment:
| Q |
1 |
aaaatatcattaacattattacaagtaaatcaccttccaataatgaaatcatggaaa-taaacacataaagaatgaatatttagacttgtagagctatca |
99 |
Q |
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| T |
7013151 |
aaaagatcattaacattactaccagtaaatcaccttcaaataacaaaatcatgaaaagaaaatataaaaagaatgaatattttgaattgtagagctatct |
7013052 |
T |
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| Q |
100 |
caacaagaactaagtacatattataaccacatg |
132 |
Q |
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| T |
7013051 |
catcacaaattatatacatattataacctcatg |
7013019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7038825 - 7038727
Alignment:
| Q |
1 |
aaaatatcattaacattattacaagtaaatcaccttccaataatgaaatcatggaaataaacacataaa--gaatgaatatttagacttgtagagctat |
97 |
Q |
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| T |
7038825 |
aaaagatcattaacattactaccagtaaatcacctttgaataacaaaatcatgaaaagaaacatataaaaggaatgagtattttgatttgtagagctat |
7038727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 7012979 - 7012902
Alignment:
| Q |
170 |
tttggattaacttaagtaaatgaaatcaatgttgaattattgagttattataaacacctttgtccatgattgtggcct |
247 |
Q |
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|||| |||||||||||||||| |||||| ||||| || |||||| | | | ||||||||||||||||| |||||||| |
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| T |
7012979 |
tttgaattaacttaagtaaattaaatcagtgttggataattgaggtgctctcaacacctttgtccatgactgtggcct |
7012902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 7003618 - 7003567
Alignment:
| Q |
129 |
catgacatgactaatataaatcatagttct--ttagtacaaattttggatta |
178 |
Q |
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| T |
7003618 |
catgacatgactgatataaatcatagttcttattagaacaaattttggatta |
7003567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 7038688 - 7038611
Alignment:
| Q |
170 |
tttggattaacttaagtaaatgaaatcaatgttgaattattgagttattataaacacctttgtccatgattgtggcct |
247 |
Q |
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|||| |||||||||||||||| |||||| |||| || |||||| | | ||||||||||||||||||| || ||||| |
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| T |
7038688 |
tttgaattaacttaagtaaataaaatcagagttggataattgaggtgctctaaacacctttgtccatgactggggcct |
7038611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7046105 - 7046053
Alignment:
| Q |
1 |
aaaatatcattaacattattacaagtaaatcaccttccaataatgaaatcatg |
53 |
Q |
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| T |
7046105 |
aaaatatcattaaaattacttccagtaaaacatcttccaataatgaaatcatg |
7046053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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