View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_high_6 (Length: 444)
Name: NF9243_high_6
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 31769215 - 31768797
Alignment:
| Q |
18 |
aatgtgtatgatagaagtgcacatttctttaattaatcaagattatataacttggactgacaaatataattagcatcattttgttaacacaacaaaaaga |
117 |
Q |
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| T |
31769215 |
aatgtgtatgatagaagtgcacatttctttaattaatcaagattatataacttggactgacaaatataattagcatccttttgttaacacaacaaaaaga |
31769116 |
T |
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| Q |
118 |
ttgttttagtggccaaatcaagcgcctatttaagcaacctgattcaaattagcgaccttatgaacccgaacagagtgt----ggaaccactaaaccaagt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31769115 |
ttgttttagtggccaaatcaagcgcctatttaagcaacctgattcaaattagcgaccttatgaacccgaacagagtgtggacggaaccactaaaccaagt |
31769016 |
T |
|
| Q |
214 |
ttagtttcttttcattttcttttcgttagaactacttaaccactatatatggtgatgggccgaaatacannnnnnngagccatgtgttgtagcccgacct |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| |
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| T |
31769015 |
ttagtttcttttcattttcttttcgttagaactacttaaccactatatatgatgatgggccgaaatacatttttttgggccatgtgttgtagcccgacct |
31768916 |
T |
|
| Q |
314 |
cgattagctttggtctggccctgttcaaatgaactttgagaatgtatatataattgagtgcacctcacgattggtattgaagagaaggacagtagtgacc |
413 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768915 |
cgatgggctttggtctggccctgttcaaatgaactttgagaatgtatatataattgagtgcacctcacgattggtattgaagagaaggacagtagtgacc |
31768816 |
T |
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| Q |
414 |
acttataattgagtataat |
432 |
Q |
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||||||||||||||||||| |
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| T |
31768815 |
acttataattgagtataat |
31768797 |
T |
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