View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9243_low_1 (Length: 832)
Name: NF9243_low_1
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 482; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 13 - 661
Target Start/End: Original strand, 9999393 - 10000020
Alignment:
| Q |
13 |
gctgaaacaaatggtgacagcttaaacttaacaatttctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9999393 |
gctgaaacaaatggtgacagcttaaacttaacaatctctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
9999492 |
T |
|
| Q |
113 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9999493 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggatgattggcttcctggtagtgaaggttctggtgttgccgatgt |
9999592 |
T |
|
| Q |
213 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcattatgatcct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9999593 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttaccaatgaatgttggtgattctcattatgatcct |
9999692 |
T |
|
| Q |
313 |
ttgtttccatttggatttggtcttacaactgaagcatataaggctacttcagaatattagattttgttaaatcatttagcattttttgtgtgttcttagt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9999693 |
ttgtttccatttggatttggtcttacaactgaagctcataaggctacttcagaatattagattttgttaaatcatttagcattttt--tgtgttcttagg |
9999790 |
T |
|
| Q |
413 |
ctatttattactattgta-ttttttctacattagatgttggtaccaaattggtattttcgtatactatgtttgaaagnnnnnnnnnnnttcagctttaat |
511 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
9999791 |
ctatttattactattgtatttttttctacattagatgttagtaccaaattggtattttcatatactatgtttgaaa------aaaaaaatcagctttaat |
9999884 |
T |
|
| Q |
512 |
tgttaaacttattgagttccaattaaatttatatgttttttgtttagacaaatgttaagtggttaaaaatattggttagaaaattgttaacagcgtagat |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| |||| |
|
|
| T |
9999885 |
tgttaaacttattgagttccaattaaatttatatgttttttgtttagacaaatg-taag-------------tggttagaaaattgttaacggcggagat |
9999970 |
T |
|
| Q |
612 |
cgaactctaacctccttatgaatactttttcgatgttctcatttatatta |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9999971 |
cgaactctaacctccttatgaatactttttcgatgttctcacttatatta |
10000020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 10005541 - 10005999
Alignment:
| Q |
13 |
gctgaaacaaatggtgacagcttaaacttaacaatttctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005541 |
gctgaaacaaatggtgacagcttaaacttaacaatctctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
10005640 |
T |
|
| Q |
113 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10005641 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggttgcttggcttcctggtagtgaaggttctggtgttgccgatgt |
10005740 |
T |
|
| Q |
213 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcattatgatcct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10005741 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcattatgatcct |
10005840 |
T |
|
| Q |
313 |
ttgtttccatttggatttggtcttacaactgaagcatataaggctacttcagaatattagattttgttaaa----tcatttagcattttttgtgtgttct |
408 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
10005841 |
ttgtttccatttggatttggccttacaactgaagcatataaggctacttcagaatatttgagtttgttaaatatttcatttgccatttttggtgtgttct |
10005940 |
T |
|
| Q |
409 |
tagtctatttattactattgtattttttctacattagatgttggtaccaaattggtatt |
467 |
Q |
| |
|
||| |||||||||||||||| ||||||| ||| |||| |||||| |||| ||||||||| |
|
|
| T |
10005941 |
taggctatttattactattgcattttttttactttaggtgttggcaccacattggtatt |
10005999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 329
Target Start/End: Original strand, 9992438 - 9992754
Alignment:
| Q |
13 |
gctgaaacaaatggtgacagcttaaacttaacaatttctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
112 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| || | ||| ||||| ||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
9992438 |
gctgaaacaaatggcgacagcttgaacttaacaatttccggtaacggaacagaaacaataaacaatgtatgcggcagagtgaaatgtgtcgttgtgttag |
9992537 |
T |
|
| Q |
113 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgt |
212 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||||| | |||||||| ||||| || |||| |||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
9992538 |
tcactggtagacctgttgccatacaaccatatcttaacaaaattgacggactcgttgctgcttggcttcctggtagtgaaggtactggtgttgctgatgt |
9992637 |
T |
|
| Q |
213 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcattatgatcct |
312 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9992638 |
tttgtttggtgattatggatttactggtaagcttgctaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcattatgatcct |
9992737 |
T |
|
| Q |
313 |
ttgtttccatttggatt |
329 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9992738 |
ttgtttccatttggatt |
9992754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 10013882 - 10014212
Alignment:
| Q |
13 |
gctgaaacaaatggtgacagcttaaacttaacaatttctggacatggatatgaaacgatagacaatgtatgcagcggagtgaaatgtgtcgttgtgttaa |
112 |
Q |
| |
|
||||||||| |||||||||||||||| || ||| || ||| ||||||| ||||| || | ||||||||| ||| |||||||||||| ||||| |||| |
|
|
| T |
10013882 |
gctgaaacagatggtgacagcttaaatttgacacttcctgcacatggaatagaaacaatcaaaaatgtatgcggcgcagtgaaatgtgttgttgtcttaa |
10013981 |
T |
|
| Q |
113 |
tcaccggtagacctattgttatacaaccatatcttgagaaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgt |
212 |
Q |
| |
|
|| | || |||||| ||||||||||||||| |||| | || ||||| ||||| || || | |||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
10013982 |
tctctggaagacctgttgttatacaaccatttcttcacaacattgacggactcgttgcggcttggcttcctggtagtgaaggtactggtgttgctgatgt |
10014081 |
T |
|
| Q |
213 |
tttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcattatgatcct |
312 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||| || ||||||||||| ||| ||||||||||||| |
|
|
| T |
10014082 |
tttgtttggtgattatggatttactggtaagctttcaaggacatggtttaagactgtccatcagttaccgatgaatgttggggatcgtcattatgatcct |
10014181 |
T |
|
| Q |
313 |
ttgtttccatttggatttggtcttacaactg |
343 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |
|
|
| T |
10014182 |
ttgtttccgtttgggtttggtcttacaactg |
10014212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 691 - 821
Target Start/End: Original strand, 10000494 - 10000628
Alignment:
| Q |
691 |
tgaaaatatattttaaaactatccatacgtgatttgatcattaaatttgaacaatcataaacaaaacaaaaattaaaagtaacgttgttaa----ttatt |
786 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10000494 |
tgaaaatatattttaaaactatccatacgtgatttgatcattaaatttgaacaatcataaacaaaacaaaaattaaaagtaacgttgttaattatttatt |
10000593 |
T |
|
| Q |
787 |
taattgagatcagaatggatcataatcacaggttc |
821 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
10000594 |
taattgagatcagaatggatcataatcacatgttc |
10000628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 377 - 577
Target Start/End: Original strand, 9992779 - 9992971
Alignment:
| Q |
377 |
tgttaaatcatttagcattttttgtgtgttcttagtctatttattactattgtattttttctacattagatgttggtaccaaattggtattttcgtatac |
476 |
Q |
| |
|
|||||||| || |||||||||| ||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||| |
|
|
| T |
9992779 |
tgttaaataatgtagcatttttggtgtgctcttaggctatttattactattgtattttttttacattagatgttggtaccacattggtattgtgatatac |
9992878 |
T |
|
| Q |
477 |
tatgtttgaaagnnnnnnnnnnnttcagctttaattgttaaacttattgagttccaattaaatttatatgttttttgtttagacaaatgttaagtggtta |
576 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
9992879 |
tatgtttgaaa-------tatttttcagcttcaattgttaaacttattgagttccaatcaagtttatatgtttgttctttagacaaatgtt-agtggtta |
9992970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 696 - 780
Target Start/End: Original strand, 9994669 - 9994753
Alignment:
| Q |
696 |
atatattttaaaactatccatacgtgatttgatcattaaatttgaacaatcataaacaaaacaaaaattaaaagtaacgttgtta |
780 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
9994669 |
atatattttaaaactatccatactagatttgatcattaaatttgaccaattataaacaaaaccaaaattaaaagtaacgttgtta |
9994753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 500 - 578
Target Start/End: Original strand, 10006033 - 10006108
Alignment:
| Q |
500 |
ttcagctttaattgttaaacttattgagttccaattaaatttatatgttttttgtttagacaaatgttaagtggttaaa |
578 |
Q |
| |
|
|||||||| |||| ||| ||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10006033 |
ttcagcttcaattattacacttattgagttccaatctaatt--tatgttttttgtttagagaaatg-taagtggttaaa |
10006108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 164 - 338
Target Start/End: Complemental strand, 33353383 - 33353209
Alignment:
| Q |
164 |
ttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaa |
263 |
Q |
| |
|
|||| ||||||||||| || ||||||||||| ||||| || |||||||| |||||||||||||| || || || || |||||||| |||||||| || |
|
|
| T |
33353383 |
ttgttgctggttggctaccaggtagtgaaggacaaggtgtggctgatgttttatttggtgattatggtttcacaggaaagcttccaagaacatggttcaa |
33353284 |
T |
|
| Q |
264 |
gactgttgatcagttgccaatgaatgttggtgattctcattatgatcctttgtttccatttggatttggtcttac |
338 |
Q |
| |
|
| ||||||||| | |||||||||||||| ||| |||||||||| || | || |||||||| ||||| ||||| |
|
|
| T |
33353283 |
aagtgttgatcaacttccaatgaatgttggagatcctcattatgaccccgttttcccatttgggtttggccttac |
33353209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 333
Target Start/End: Original strand, 35994277 - 35994459
Alignment:
| Q |
151 |
aaaattgaaggacttgtggctggttggcttcctggtagtgaaggttctggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaa |
250 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||||| | |||||| |||||||| || ||| | | |||||| | || ||| || || ||||| ||| |
|
|
| T |
35994277 |
aaaattgatgcacttgtggctgcatggcttcctggcactgaaggccaaggtgttgccgacgttctctatggtgactttgaattcactggcaaactggcaa |
35994376 |
T |
|
| Q |
251 |
ggacatggtttaagactgttgatcagttgccaatgaatgttggtgattctcattatgatcctttgtttccatttggatttggt |
333 |
Q |
| |
|
|||||||||| ||||| || || ||| | |||||||||||||| ||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
35994377 |
ggacatggttcaagacagtagaccagcttccaatgaatgttggcgataaacattatgatcctctatttccatttggatttggt |
35994459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 11244412 - 11244300
Alignment:
| Q |
199 |
ggtgttgcggatgttttgtttggtgattatggatttaccggtaaacttccaaggacatggtttaagactgttgatcagttgccaatgaatgttggtgatt |
298 |
Q |
| |
|
||||| || |||||| | |||||||| ||||| || || ||||||||| ||||||||||||| || |||| ||||| | |||||||||||||| ||| |
|
|
| T |
11244412 |
ggtgtggcagatgttctttttggtgactatggtttcactggtaaacttgcaaggacatggttcaaatctgtcgatcaactcccaatgaatgttggagatc |
11244313 |
T |
|
| Q |
299 |
ctcattatgatcc |
311 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
11244312 |
ctcactacgatcc |
11244300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University