View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_low_10 (Length: 532)
Name: NF9243_low_10
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_10 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 247 - 518
Target Start/End: Original strand, 38724860 - 38725131
Alignment:
| Q |
247 |
caccatagcatttcaaattaatagatcgatcgatgcaactgaataaggaggaagtgcaacattcatgtccttgcttgcatttgcaagtgaagttcgttgg |
346 |
Q |
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| T |
38724860 |
caccatagcatttcaaattaatagatcaatcgatgcaactgaataaggatgaagtgcaacatacatgtccttgcttgcatttgcaagtgaagttcgttgg |
38724959 |
T |
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| Q |
347 |
ggcgaaatcttcattggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtactta |
446 |
Q |
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| T |
38724960 |
ggcgaaatcttcattggctctgcgaaggaattctcatccattataccggaggatgtaagtactgccattgatgaaccagatggttgcacatttgtactta |
38725059 |
T |
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| Q |
447 |
acccatttattgaaattcctaagttctgagaggcttttgcatagtttactacctttactcttagataatttt |
518 |
Q |
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| T |
38725060 |
acccatttattgaaattcctaagttctgagaggcttttgcatagtttactacctttagtcttagataatttt |
38725131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 38724687 - 38724748
Alignment:
| Q |
23 |
atgtcatactattagcatccatgatatccatttacatctcttagtaaatgtaaatctttttg |
84 |
Q |
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| T |
38724687 |
atgtcatactatctgcatccatgatatccatttacatccgtgagtaaatgtaaatatttttg |
38724748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 32746 - 32675
Alignment:
| Q |
278 |
gatgcaactgaataaggaggaagtgcaacattcatgtccttgcttgcatttgcaagtgaagttcgttggggc |
349 |
Q |
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| T |
32746 |
gatgtaactgaataaggaggaagtctaacatccatgtcattgcttgcatttccaagtgcagttctttggggc |
32675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 462
Target Start/End: Complemental strand, 32435 - 32333
Alignment:
| Q |
360 |
ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga |
459 |
Q |
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| T |
32435 |
ttggctccgagaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga |
32336 |
T |
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| Q |
460 |
aat |
462 |
Q |
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||| |
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| T |
32335 |
aat |
32333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 34165925 - 34165854
Alignment:
| Q |
278 |
gatgcaactgaataaggaggaagtgcaacattcatgtccttgcttgcatttgcaagtgaagttcgttggggc |
349 |
Q |
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| T |
34165925 |
gatgtaactgaataaggaggaagtctaacatccatgtcattgcttgcatttccaagtgcagttctttggggc |
34165854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 34216019 - 34215948
Alignment:
| Q |
278 |
gatgcaactgaataaggaggaagtgcaacattcatgtccttgcttgcatttgcaagtgaagttcgttggggc |
349 |
Q |
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| T |
34216019 |
gatgtaactgaataaggaggaagtctaacatccatgtcattgcttgcatttccaagtgcagttctttggggc |
34215948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 462
Target Start/End: Complemental strand, 34165614 - 34165512
Alignment:
| Q |
360 |
ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga |
459 |
Q |
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| T |
34165614 |
ttggctccgagaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga |
34165515 |
T |
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| Q |
460 |
aat |
462 |
Q |
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||| |
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| T |
34165514 |
aat |
34165512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 462
Target Start/End: Complemental strand, 34172111 - 34172009
Alignment:
| Q |
360 |
ttggctctgcgaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattga |
459 |
Q |
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| T |
34172111 |
ttggctccgagaaggaattctcatccattctattggaggacgtaagtaccaccattgatgaattagacgattgaacaattgaatttaaaccatttattga |
34172012 |
T |
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| Q |
460 |
aat |
462 |
Q |
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||| |
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| T |
34172011 |
aat |
34172009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 462
Target Start/End: Complemental strand, 34215698 - 34215606
Alignment:
| Q |
370 |
gaaggaattctcatccattataccggaggatgtaagcactgccattgatgaaccagatggttgcacatttgtacttaacccatttattgaaat |
462 |
Q |
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| T |
34215698 |
gaaggaattctcatccattctattggaggacgtaagcaccaccattgatgaattagacgattgaacagttgaatttaaaccatttattaaaat |
34215606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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