View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9243_low_11 (Length: 514)
Name: NF9243_low_11
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 3 - 493
Target Start/End: Original strand, 4817481 - 4817971
Alignment:
| Q |
3 |
agacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtgg |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4817481 |
agacccccgttggttcggtctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtatggtaattgaagatatggtgg |
4817580 |
T |
|
| Q |
103 |
acccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaat |
202 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| || |
|
|
| T |
4817581 |
acccgttcattaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcatgatgatggaaatcaacgaatgtcgat |
4817680 |
T |
|
| Q |
203 |
gagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtaagcaa |
302 |
Q |
| |
|
||||||||| |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4817681 |
gagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtgagcaa |
4817780 |
T |
|
| Q |
303 |
aggatagaattggcacattttactgatgatgggagtgatacgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaaccactactg |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4817781 |
aggatagaattgtcacattttactgatgatgggagtgatatgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaacctctactg |
4817880 |
T |
|
| Q |
403 |
aagaacaacctttgttttcataaaattttcatgctacggtgttttctgagattgaaaatccaaaagcacgatagatatttgccactatttc |
493 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4817881 |
aagaacaacctttgttttctgaaaattttcatgctacggtgttttctgagattggaaatccaaaagcacgatagatatttgccactatttc |
4817971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 3 - 485
Target Start/End: Original strand, 4785052 - 4785534
Alignment:
| Q |
3 |
agacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtgg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4785052 |
agacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtatggtaattgaagatatggtgg |
4785151 |
T |
|
| Q |
103 |
acccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaat |
202 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| || |
|
|
| T |
4785152 |
acccgttcattaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtgttaaattgtttgcatgatgatggaaatcaacgaatgtcgat |
4785251 |
T |
|
| Q |
203 |
gagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtaagcaa |
302 |
Q |
| |
|
||||||||| |||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4785252 |
gagtgatgtggttgcgacattagagtttgcattgcagttagagatgagtgaggaggatagtaagcttgttggtaccaaggaaaaggaaaagagtgagcaa |
4785351 |
T |
|
| Q |
303 |
aggatagaattggcacattttactgatgatgggagtgatacgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaaccactactg |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4785352 |
aggatagaattgtcacattttactgatgatgggagtgatatgtgtttcacaagtagtagtgatgactatgggtctcataccaccaattcaacctctactg |
4785451 |
T |
|
| Q |
403 |
aagaacaacctttgttttcataaaattttcatgctacggtgttttctgagattgaaaatccaaaagcacgatagatatttgcc |
485 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
4785452 |
aagaacaacctttgttttctgaaaattttcatgctacggtgttttctgagaatggaaatccaaaagcacgatagatatttgcc |
4785534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 4862788 - 4862525
Alignment:
| Q |
3 |
agacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtgg |
102 |
Q |
| |
|
||||| || ||||||||||||| || ||||||||||| ||||| | ||||||||||||| |||||||||||||||||| |||||||||| ||||| | |
|
|
| T |
4862788 |
agaccaccattggttcgttcttctgaaaagaaaaaagcgagtttagtcgtttggtttcaaaaatgttacaatgaaggtgtcataattgaagagatggtag |
4862689 |
T |
|
| Q |
103 |
acccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaat |
202 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4862688 |
atccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaat |
4862589 |
T |
|
| Q |
203 |
gagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaag |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
4862588 |
gagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaagatactaag |
4862525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 4698407 - 4698670
Alignment:
| Q |
3 |
agacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtgg |
102 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||| ||||| | ||||||| |||| ||||||||||||||||||| | || ||||| ||||||| |
|
|
| T |
4698407 |
agaccacctttggttcgttctttggaaaagaaaaaagcgagtttagtcttttggttccaaagatgttacaatgaaggtgtgatcatcgaagagatggtgg |
4698506 |
T |
|
| Q |
103 |
acccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaat |
202 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||| | ||| ||||||| |||||||| || |||||||||||||| |||||||||||||| ||||| || |
|
|
| T |
4698507 |
acccgttcataaaggattctataacggctgaatgtctaaaaagttattgccaaatggtgttgagttgtttgcatgatgatggaaatcaacggatgtcgat |
4698606 |
T |
|
| Q |
203 |
gagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagtaag |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
4698607 |
gagtgatgttgttggagctttagagtttgcattgcagttggagataagtgaggaggatactaag |
4698670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 65 - 266
Target Start/End: Original strand, 4713345 - 4713546
Alignment:
| Q |
65 |
atgttacaatgaaggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtttta |
164 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
4713345 |
atgttacaatgaaggtgtgatagttgaagagatggtggacccgttcataaaggactctataacaagtgagtgtttgaaatgttattgtgaaatggtgttg |
4713444 |
T |
|
| Q |
165 |
agttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagta |
264 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||| ||| | |||| ||||||| ||||||| ||| |
|
|
| T |
4713445 |
agttgtttgcatggtgatggaaatcaacgaatgtctatgagtgatgtggttgggactttagagcttgcgttgaaattggttatgagtggggaggatggta |
4713544 |
T |
|
| Q |
265 |
ag |
266 |
Q |
| |
|
|| |
|
|
| T |
4713545 |
ag |
4713546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 65 - 266
Target Start/End: Original strand, 4854715 - 4854916
Alignment:
| Q |
65 |
atgttacaatgaaggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggtttta |
164 |
Q |
| |
|
||||||||||||||| ||| || ||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
4854715 |
atgttacaatgaaggagtgatagttgaagagatggtggacccattcataaaggactctataacaagtgagtgtttgaaattttattgtcaaatggtgttg |
4854814 |
T |
|
| Q |
165 |
agttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatagta |
264 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||||| |||||| |||||||| |||| ||| | |||| ||||||| |||| |||||| |
|
|
| T |
4854815 |
agttgtttgcatggtgatggaaatcaacggatgtctatgagtgatgtggttggaactttagagcttgcgttgaaattggttatgagtggggagaatagta |
4854914 |
T |
|
| Q |
265 |
ag |
266 |
Q |
| |
|
|| |
|
|
| T |
4854915 |
ag |
4854916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 4642444 - 4642350
Alignment:
| Q |
162 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
256 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||| | || ||||| | |||||||||||| ||||| |||| | |||||||||| |
|
|
| T |
4642444 |
ttaagttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattggtggtgagtgagga |
4642350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 53 - 243
Target Start/End: Complemental strand, 4665784 - 4665594
Alignment:
| Q |
53 |
ttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgt |
152 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||| ||||||| | || || || || ||| ||| |||||||| ||| ||||| ||||||| |||||| |
|
|
| T |
4665784 |
ttggtttaaaaaatgttacgatgaaggtgtggcaattgaacaaatagttgatccattcgtaagggattctatcacagatgagtacttgaaatattattgc |
4665685 |
T |
|
| Q |
153 |
caaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttgg |
243 |
Q |
| |
|
| ||| |||||||| |||||||| ||||| | ||||||| ||||||||| | || ||||| | |||||||||||||||||| |||| |
|
|
| T |
4665684 |
aagttggcgttaagttgcttgcatgatgatgggactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcattgcaattgg |
4665594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 4629808 - 4629568
Alignment:
| Q |
3 |
agacccccgttggttcgttctttggataagaaaaaagcaagtttggctgtttggtttcaaacatgttacaatgaaggtgtggtaattgaagatatggtgg |
102 |
Q |
| |
|
||||| || ||||||||| |||||||||||| | ||| ||| | | | ||||||||||| ||| | ||||||||||||| |||||| | || || | |
|
|
| T |
4629808 |
agaccacctttggttcgtgatttggataagaatacagctagtctagtttgttggtttcaaaaatgccataatgaaggtgtggcgattgaacaaatagtcg |
4629709 |
T |
|
| Q |
103 |
acccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgtttgcatgacgatggaaatcaacgaatgtcaat |
202 |
Q |
| |
|
| || ||| ||| |||||||| ||| |||||| ||||||| |||||| | ||| |||||||| |||||||| ||||| | ||||||| ||||| |
|
|
| T |
4629708 |
atccattcttaagggattctatcacagttgagtgcttgaaatattattgcaagttggcgttaagttgcttgcatgatgatgggactcaacgaccctcaat |
4629609 |
T |
|
| Q |
203 |
gagtgatgttgttggagctttagagtttgcattgcagttgg |
243 |
Q |
| |
|
|||| | || ||||| | |||||||||||||||||| |||| |
|
|
| T |
4629608 |
gagtcaagtggttgggggtttagagtttgcattgcaattgg |
4629568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 4635597 - 4635503
Alignment:
| Q |
162 |
ttaagttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagga |
256 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||||| | || ||||| | |||||||||||| ||||| || | | |||||||||| |
|
|
| T |
4635597 |
ttaagttgtttgcatgatgatggaattcaacgaccctcaatgagtcaagtggttgggggtttagagtttgcgttgcaattagtggtgagtgagga |
4635503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 255
Target Start/End: Complemental strand, 4660630 - 4660448
Alignment:
| Q |
73 |
atgaaggtgtggtaattgaagatatggtggacccgttcataaaagattctataacaagtgagtgtttgaaatgttattgtcaaatggttttaagttgttt |
172 |
Q |
| |
|
|||||||||||| |||||| | || ||||| || | | ||||||||||||| || |||||||||| ||| |||||| | ||| ||||||||||| |
|
|
| T |
4660630 |
atgaaggtgtggcgattgaacaaatagtggatccatccctaaaagattctatcacggatgagtgtttggaatattattgcaagttggcgttaagttgttt |
4660531 |
T |
|
| Q |
173 |
gcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgagg |
255 |
Q |
| |
|
|||||| ||||| | ||||||| ||||||||| | || ||||| | ||||||||||| ||||| |||| | ||||||||| |
|
|
| T |
4660530 |
gcatgatgatgggactcaacgaccttcaatgagtcaagtggttgggggtttagagtttgtgttgcaattggtggtgagtgagg |
4660448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 4671377 - 4671280
Alignment:
| Q |
165 |
agttgtttgcatgacgatggaaatcaacgaatgtcaatgagtgatgttgttggagctttagagtttgcattgcagttggagatgagtgaggaggatag |
262 |
Q |
| |
|
||||| |||||||| ||||||| ||||||| ||||||||| | || ||||| | ||||||||||| ||||| |||| | |||||||||| ||||| |
|
|
| T |
4671377 |
agttgcttgcatgatgatggaactcaacgaccctcaatgagtcaagtggttgggggtttagagtttgtgttgcaattggtggtgagtgaggaagatag |
4671280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Original strand, 4698841 - 4698886
Alignment:
| Q |
434 |
tgctacggtgttttctgagattgaaaatccaaaagcacgatagata |
479 |
Q |
| |
|
||| ||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
4698841 |
tgcaacggtgttttctgagattgggaatccaagagcacgatagata |
4698886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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