View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9243_low_15 (Length: 419)
Name: NF9243_low_15
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_15 |
 | |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 33953383 - 33952990
Alignment:
| Q |
18 |
atgtagagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33953383 |
atgtagagagatagttttttcagattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
33953284 |
T |
|
| Q |
118 |
gctcaatgttgttcagttcagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaatccactcgggtaatgagtactg |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33953283 |
gctcaatgttgttcagtttagaaggatggaaatcgtagtttgtgattatcagaactcttagtttactcatttttgcaatccactcgggtaatgagtactg |
33953184 |
T |
|
| Q |
218 |
cttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33953183 |
cttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcga |
33953084 |
T |
|
| Q |
318 |
tcaattgcagaaaaggaatgaataacagattgcnnnnnnntttaaatagcattttttagatggtcaaagttagaaaaagggagtataagtatta |
411 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33953083 |
tcaattgcggaaaaggaatgaataacagattgcaaaaaaatttcaatagcattttttagatggtcaaagttagaaaaagggagtataagtatta |
33952990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 33960689 - 33960296
Alignment:
| Q |
18 |
atgtagagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
33960689 |
atgtagagagatagttttttcaaattcttcaatgtgccgaaggaagggaccgaaattcgctctagtctgattctttccaggttctgtaaagaaccgagaa |
33960590 |
T |
|
| Q |
118 |
gctcaatgttgttcagttcagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaatccactcgggtaatgagtactg |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33960589 |
gctcaatgttgttcagtttagaaggatggaaaccgtagtttgtgattatcagaactcttagtttactcatttttgcaatccactcgggtaatgagtactg |
33960490 |
T |
|
| Q |
218 |
cttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcga |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
33960489 |
cttggtatgaatatttaaaatcagaacctcgacctgagctggttgcatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaaatcaagcga |
33960390 |
T |
|
| Q |
318 |
tcaattgcagaaaaggaatgaataacagattgcnnnnnnntttaaatagcattttttagatggtcaaagttagaaaaagggagtataagtatta |
411 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33960389 |
tcaattgcggaaaaggaatgaataacagattgcaaaaaaatttcaatagcattttttagatggtcaaagttagaaaaagggagtataagtatta |
33960296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 33975984 - 33975652
Alignment:
| Q |
18 |
atgtagagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
117 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
33975984 |
atgtacagagatagttttttcaaattcttcaatgtgccgaaggaagggaccgaaattcgctctagtctgattctttccaggttctgtaaagaaccgagaa |
33975885 |
T |
|
| Q |
118 |
gctcaatgttgttcagttcagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaatccactcgggtaatgagtactg |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33975884 |
gctcaatgttgttcagtttagaaggatggaaaccgtagtttgtgattatcagaactcttagtttactcatttttgcaatccactcgggtaatgagtactg |
33975785 |
T |
|
| Q |
218 |
cttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcga |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||| || | |
|
|
| T |
33975784 |
cttggtatgaatatttaaaatcagaacctcgacctgagctggttgcatatgagaccaatccaacgcacatgtttcatctgcaaatgtgaaactcacgcaa |
33975685 |
T |
|
| Q |
318 |
tcaattgcagaaaaggaatgaataacagattgc |
350 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
33975684 |
tcaattgcagaaaaggaattaataacagattgc |
33975652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 33992903 - 33992573
Alignment:
| Q |
18 |
atgtagagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
117 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||| || |||| ||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33992903 |
atgtagagagatagttttttcagattcttcaatgtgccgaaggaagggaccaaaattcgctctagtctgattttttccaggttctgtaaagaaccgagaa |
33992804 |
T |
|
| Q |
118 |
gctcaatgttgttcagttcagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaatccactcgggtaatgagtactg |
217 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |||| || |||||||| || |
|
|
| T |
33992803 |
gctcaaagttgttcagttcacatggatggaaactgtagtttgtgattataagaacttttagtttactcatttttttgatcgactcaggaaatgagtattg |
33992704 |
T |
|
| Q |
218 |
cttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcga |
317 |
Q |
| |
|
||||||||| | ||||||||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||| | | | |
|
|
| T |
33992703 |
cttggtatgcaaatttaaaatcaaaacctcgacctgagttggttgcatttgagaccaatctgacgcacatgcttcatctgcaaatttgaaactaacacaa |
33992604 |
T |
|
| Q |
318 |
tcaattgcagaaaaggaatgaataacagatt |
348 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
33992603 |
tcaattgtggaaaaggaatgaataacagatt |
33992573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 33942922 - 33942637
Alignment:
| Q |
18 |
atgtagagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
117 |
Q |
| |
|
|||||||| |||| |||| | | ||||||||||||||| ||||||||||| |||||| ||||| |||||||||| ||||| |||||| | || | |
|
|
| T |
33942922 |
atgtagagggataattttttaagattcttcaatgtgccaaaggaaggaacagaaatcctctctagcctgattcttttaaggttggataaagagctaagta |
33942823 |
T |
|
| Q |
118 |
gctcaatgttgttcagttcagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaatccactcgggtaatgagtactg |
217 |
Q |
| |
|
|||||| ||||||||||||||||| | |||| | ||| ||| ||| | | |||| ||||| ||||||| | ||| | || || |||| |||||| |
|
|
| T |
33942822 |
gctcaagattgttcagttcagaagggcgtaaaccatgatttatgactataagagctttaagtttgttcattttctccatcaattctggaaatgtgtactg |
33942723 |
T |
|
| Q |
218 |
cttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatg |
303 |
Q |
| |
|
||||| |||||||||||||||||||||||| | ||||||| | || ||| |||||||| | || || |||||||||||||||| |
|
|
| T |
33942722 |
tttggtttgaagatttaaaatcagaacctcagcaagagctggctgcacttgggaccaatctgaagcgcaagtttcatctgcaaatg |
33942637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 33914205 - 33913946
Alignment:
| Q |
18 |
atgtagagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
117 |
Q |
| |
|
|||||||| |||| |||| | | |||||||| |||||| ||||||||||| |||||||||||| |||||||||| |||||| |||||| | | | |
|
|
| T |
33914205 |
atgtagagggataattttttgagattcttcattgtgccaaaggaaggaacagaaatccgctctagcctgattcttttcaggttggataaagagctaatta |
33914106 |
T |
|
| Q |
118 |
gctcaatgttgttcagttcagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaatccactcgggtaatgagtactg |
217 |
Q |
| |
|
|||||| ||||||||| ||||||| | |||| | ||| ||| ||| | | || ||||||| |||||||| | || | || || | || |||||| |
|
|
| T |
33914105 |
gctcaaaattgttcagtacagaagggcgtaaaccatgatttatgactataagagctcttagtttgctcattttctccttcaattctggaagtgtgtactg |
33914006 |
T |
|
| Q |
218 |
cttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatc |
277 |
Q |
| |
|
| ||| |||||| ||||||||||||||||||| |||||||| | || ||| |||||||| |
|
|
| T |
33914005 |
ttcggtttgaagaattaaaatcagaacctcaacatgagctggctgcacttgggaccaatc |
33913946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 8277376 - 8277766
Alignment:
| Q |
18 |
atgtagagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
117 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||| ||| ||| |||||| |||||||||||||||||| ||||| |||||||||| ||||| |
|
|
| T |
8277376 |
atgtagacagataattttctcagattcttcaatgtgtcgagggatggaacggaaatccgctctaatctgactctttttaggttctgta-------gagaa |
8277468 |
T |
|
| Q |
118 |
gctcaatgttgttcagttcagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaatccactcgggtaatgagtactg |
217 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8277469 |
gctcaatgttattcagtttagaaggatggaaactgtagtttgtgattatcagaacttttagtttactcatttttgcaatccactcggttaatgagtactg |
8277568 |
T |
|
| Q |
218 |
cttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaactcaagcga |
317 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||| |||||| ||||||||||||||||||||||||||| | | |
|
|
| T |
8277569 |
cttggtatgaagatttaaaattagaacctcggcctgagctgtttgtatttgagaccaatccaacgcatatgtttcatctgcaaatgtgaaactcacgtgg |
8277668 |
T |
|
| Q |
318 |
tcaattgcagaaaaggaatgaat---aacagattgc-nnnnnnntttaaatagcattttttagatggtcaaagttagaaaaagggagtataagtatta |
411 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||| ||| |||||||||||||| |||||||| ||||| |||| ||||||||||||| |
|
|
| T |
8277669 |
tcaattgcggaaaagaaatgaatagcaacagattgcaagaaatttttcgatagcattttttagttggtcaaatttagagaaagttagtataagtatta |
8277766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 12947 - 12656
Alignment:
| Q |
18 |
atgtagagagatagttttctcaaattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
117 |
Q |
| |
|
||||| || ||||||||||||| | ||||||||||||||||||||||||| |||| ||||| | ||| |||| || |||||| |||||||| | || | |
|
|
| T |
12947 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
12848 |
T |
|
| Q |
118 |
gctcaatgttgttcagttcagaaggatggaaactgtagtttgtgattatcataacttttagtttactcatttttgcaatccactcgggtaatgagtactg |
217 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||| ||| ||| | ||||| |
|
|
| T |
12847 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaacttgggaagcatatactg |
12748 |
T |
|
| Q |
218 |
cttggtatgaagatttaaaatcagaacctcaacctgagctggttccatttgagaccaatcgaacgcacatgtttcatctgcaaatgtgaaac |
309 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||||| |||||| |||||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
12747 |
cttggtatgaagatttaaaattaaaacctcggcctgagctggttgcatttgggaccaatctggcgcacaagtttcatctgcaaacgtgaaac |
12656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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