View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_low_17 (Length: 361)
Name: NF9243_low_17
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 4 - 324
Target Start/End: Original strand, 2237518 - 2237838
Alignment:
| Q |
4 |
agagatttccagtggcaatatagacatgttttctataaacatcaatggaaggactacttccccaaatggcagctccagcatatgctcctatctttccgtt |
103 |
Q |
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| T |
2237518 |
agagatttccggtggcaatatagacatgttttcgataaacatcaatggaaggactacttccccaaatggcagctccagcatatgctcctatctttccgtt |
2237617 |
T |
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| Q |
104 |
gttatccggtaacatatgggttttccataagatatcgccggtttgagcatcaagttttacaaggcttccacggaatatgcaacaatctttaatggtcgca |
203 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |
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| T |
2237618 |
gttatccggtaacatataggttttccataagatgtcgccggtttgagcatcaagttttacaagacttccacgaaatatgcaacaatctttaatggttgca |
2237717 |
T |
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| Q |
204 |
ccttcttcaagtgaagatgttccaacgtagtaactcctatattttgagagtttagcacaattatacgtcgatataaaagggtcaaaaagtaaaaaggaat |
303 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| | |||||||| ||||| ||||| || ||||||| |
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| T |
2237718 |
ccttcttctagtgaagatgttccaacatagtaactcctatatattgaaagtttagcataattatactttgatataaacgggtcgaaaagaaagaaggaat |
2237817 |
T |
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| Q |
304 |
gagtgataatccaaaacttga |
324 |
Q |
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|| ||||| || |||||||| |
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| T |
2237818 |
gaatgatagccccaaacttga |
2237838 |
T |
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