View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_low_22 (Length: 300)
Name: NF9243_low_22
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 10231514 - 10231254
Alignment:
| Q |
1 |
tgaaatcaaagggccctcaataaa-gaaaacaagtgtgtcttttccttttactttttacctcaatgctgagccacctgtatgcaaaattctcctgtgtaa |
99 |
Q |
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|||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10231514 |
tgaaatcaaagggccctcaataaaagaaaacaagtttttcttttccttttactttttacctcaatgctgagccacctgtatgcaagattctcctgtgtaa |
10231415 |
T |
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| Q |
100 |
tttgacttcttattttgctttggtatgatatagccttctttatggagctgaagacccttctattgctggactggtgttggacagcgccttttcaaacttg |
199 |
Q |
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| T |
10231414 |
tttgacttcttattttgctttggtatgatatagccttctttatggagctgaagacccttctattgctggactggtgttggacagcgccttttcaaacttg |
10231315 |
T |
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| Q |
200 |
tacgacttgatgatggagcttgttgatgtctataaaatccgacttccaaaattcactgtaa |
260 |
Q |
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| T |
10231314 |
tacgacttgatgatggagcttgttgatgtctataaaatccgacttccaaaattcactgtaa |
10231254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 113 - 255
Target Start/End: Complemental strand, 56247834 - 56247692
Alignment:
| Q |
113 |
tttgctttggtatgatatagccttctttatggagctgaagacccttctattgctggactggtgttggacagcgccttttcaaacttgtacgacttgatga |
212 |
Q |
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||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||||||||| ||||| || | | |||| |
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| T |
56247834 |
tttgctttggtgggatttagccttctttatggagccgaagacccttctattgctggaatggtattggatagcgccttttctaacttatataatctcatga |
56247735 |
T |
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| Q |
213 |
tggagcttgttgatgtctataaaatccgacttccaaaattcac |
255 |
Q |
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| T |
56247734 |
tggagcttgtggacgtttataaaatccggcttccaaagttcac |
56247692 |
T |
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