View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9243_low_23 (Length: 296)
Name: NF9243_low_23
Description: NF9243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9243_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 25924088 - 25923826
Alignment:
| Q |
19 |
tcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaacatgtcaaaccatgtcaatttctgtcacattggga |
118 |
Q |
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| T |
25924088 |
tcattcgatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaacatgtaaaaccatgtcaatttctgtcacattggga |
25923989 |
T |
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| Q |
119 |
attacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaaggtagaaatggaaatccagtaaaacagttggtagggt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25923988 |
attacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaagccaaagaaaggtagaaatggaaatccagtaaaacagttggtagggt |
25923889 |
T |
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| Q |
219 |
ttgagagtgtgacgatagaaggaggtggaaaaggtgaagttggatttgaagttagtgtctgtg |
281 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
25923888 |
ttgagagtgtgacggtagaaggaggaggaaaaggtgaagttggatttgaagttagtgtttgtg |
25923826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 281
Target Start/End: Complemental strand, 25905243 - 25904983
Alignment:
| Q |
21 |
attcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaacatgtcaaaccatgtcaatttctgtcacattgggaat |
120 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25905243 |
attcaatactcgaaaactctgaaacaatcaattacaaacttgtttcagagttaggcgaagaaacatgtaaaaccatgtcaatttctgtcacattgggaat |
25905144 |
T |
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| Q |
121 |
tacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaaggtagaaatggaaatccagtaaaacagttggtagggttt |
220 |
Q |
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| T |
25905143 |
tacaaatactggaagcatggctgggaagcatcctgtgttgctgtttgtgaagccaaagaaaggtagaaatggaaatccagtaaaacagttggtagggttt |
25905044 |
T |
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| Q |
221 |
gagagtgtgacgatagaaggaggtggaaaaggtgaagttggatttgaagttagtgtctgtg |
281 |
Q |
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|||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
25905043 |
gagagtgtgacggtggaaggaggtggaaagggtgaagttggatttgaagttagtgtttgtg |
25904983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 25883911 - 25883649
Alignment:
| Q |
19 |
tcattcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaa-catgtcaaaccatgtcaatttctgtcacattggg |
117 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
25883911 |
tcattcgatactcgaaaactctgaaacaatccgttacaaacttgtttcggagttagg-gaagaaagcatgtaaaaccatgtcaatttctgtaacattggg |
25883813 |
T |
|
| Q |
118 |
aattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaaggtagaaatggaaatccagtaaaacagttggtaggg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25883812 |
aattacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaaggtagaaatggaaatccagtaaaacagttggtaggg |
25883713 |
T |
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| Q |
218 |
tttgagagtgtgacgatagaaggaggtggaaaaggtgaagttggatttgaagttagtgtctgtg |
281 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
25883712 |
tttgagagtgtgacggtagaagggggtggaaaaggtgaagttggatttgaagttagtgtttgtg |
25883649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 25961183 - 25961443
Alignment:
| Q |
21 |
attcaatactcgaaaactctgaaacaatctattacaaacttgtttcagagttaggtgaagaaa-catgtcaaaccatgtcaatttctgtcacattgggaa |
119 |
Q |
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|||||||||||||||| ||| |||||||| |||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
25961183 |
attcaatactcgaaaaatctcaaacaatccattacaaacttgtttcggagttagg-gaagaaagcatgtaaaaccatgtcaatttctgtaacattgggaa |
25961281 |
T |
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| Q |
120 |
ttacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaaggtagaaatggaaatccagtaaaacagttggtagggtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25961282 |
ttacaaatactggaagcatggctgggaaacatcctgtgttgctgtttgtgaaaccaaagaaaggtagaaatggaaatccagtaaaacagttggtagggtt |
25961381 |
T |
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| Q |
220 |
tgagagtgtgacgatagaaggaggtggaaaaggtgaagttggatttgaagttagtgtctgtg |
281 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
25961382 |
tgagagtgtgacggtagaagggggtggaaaaggtgaagttggatttgaagttagtgtttgtg |
25961443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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